Wall clock time and date at job start Wed Apr 15 2020 11:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86797 * 120.00096 * 2 1 4 4 H 1.48497 * 109.47556 * 270.00216 * 3 2 1 5 5 H 1.48495 * 109.47339 * 149.99413 * 3 2 1 6 6 H 1.48508 * 109.47003 * 30.00080 * 3 2 1 7 7 C 1.38656 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00264 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99801 * 0.02562 * 7 2 1 10 10 C 1.35751 * 116.99924 * 174.92396 * 9 7 2 11 11 C 1.38879 * 120.07195 * 185.38677 * 10 9 7 12 12 C 1.38098 * 119.92858 * 179.72219 * 11 10 9 13 13 C 1.38297 * 120.06933 * 0.55923 * 12 11 10 14 14 C 1.50707 * 119.93024 * 179.74171 * 13 12 11 15 15 N 1.46903 * 109.47098 * 269.98015 * 14 13 12 16 16 C 1.47836 * 110.99623 * 295.31163 * 15 14 13 17 17 C 1.54914 * 104.79741 * 213.63612 * 16 15 14 18 18 C 1.55145 * 101.64893 * 37.07164 * 17 16 15 19 19 C 1.47443 * 110.99871 * 174.47117 * 15 14 13 20 20 H 1.09002 * 109.88214 * 242.66193 * 19 15 14 21 21 C 1.53001 * 109.88883 * 3.68478 * 19 15 14 22 22 F 1.39903 * 109.46778 * 178.12525 * 21 19 15 23 23 C 1.38301 * 120.13992 * 359.72105 * 13 12 11 24 24 C 1.38094 * 120.06806 * 359.97438 * 23 13 12 25 25 H 0.97005 * 120.00093 * 179.97438 * 1 2 3 26 26 H 1.07994 * 120.02857 * 359.97438 * 11 10 9 27 27 H 1.08000 * 119.95881 * 180.25558 * 12 11 10 28 28 H 1.09006 * 109.46604 * 29.97786 * 14 13 12 29 29 H 1.08996 * 109.47340 * 149.97569 * 14 13 12 30 30 H 1.08992 * 110.37901 * 332.46630 * 16 15 14 31 31 H 1.09004 * 110.37860 * 94.81093 * 16 15 14 32 32 H 1.09001 * 110.98846 * 278.98073 * 17 16 15 33 33 H 1.08994 * 111.02214 * 155.17774 * 17 16 15 34 34 H 1.09001 * 110.70392 * 205.96572 * 18 17 16 35 35 H 1.09000 * 110.70534 * 82.72995 * 18 17 16 36 36 H 1.08998 * 109.47552 * 298.12328 * 21 19 15 37 37 H 1.09007 * 109.46988 * 58.12928 * 21 19 15 38 38 H 1.08004 * 119.95891 * 180.02562 * 23 13 12 39 39 H 1.07999 * 120.03486 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0465 -1.4000 5 1 3.5470 1.4402 0.7001 6 1 1.4470 2.6527 0.7001 7 6 2.0089 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0001 9 8 1.3347 -2.3685 0.0005 10 6 2.0699 -3.5046 -0.1059 11 6 1.4366 -4.7348 -0.2251 12 6 2.1875 -5.8882 -0.3390 13 6 3.5687 -5.8202 -0.3229 14 6 4.3851 -7.0815 -0.4416 15 7 4.6413 -7.6268 0.8982 16 6 5.4798 -6.7051 1.6938 17 6 6.3486 -7.6289 2.5836 18 6 6.6359 -8.8112 1.6210 19 6 5.3247 -8.9307 0.8161 20 1 4.6939 -9.7077 1.2480 21 6 5.6350 -9.2647 -0.6444 22 9 6.3208 -10.4824 -0.7087 23 6 4.2024 -4.5973 -0.1985 24 6 3.4572 -3.4397 -0.0905 25 1 -0.4850 -0.8401 -0.0004 26 1 0.3580 -4.7889 -0.2328 27 1 1.6955 -6.8447 -0.4359 28 1 3.8370 -7.8146 -1.0336 29 1 5.3332 -6.8560 -0.9296 30 1 6.1118 -6.1057 1.0386 31 1 4.8545 -6.0613 2.3123 32 1 5.7919 -7.9643 3.4587 33 1 7.2727 -7.1318 2.8782 34 1 6.8290 -9.7261 2.1812 35 1 7.4724 -8.5775 0.9624 36 1 4.7036 -9.3422 -1.2053 37 1 6.2533 -8.4764 -1.0739 38 1 5.2812 -4.5475 -0.1867 39 1 3.9526 -2.4849 0.0061 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293130040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:57 Heat of formation + Delta-G solvation = -71.660952 kcal Electronic energy + Delta-G solvation = -21405.886203 eV Core-core repulsion = 18034.388626 eV Total energy + Delta-G solvation = -3371.497577 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.61455 -41.10795 -40.24035 -38.27088 -34.51094 -33.59121 -32.02805 -31.63311 -30.20627 -27.15780 -26.19034 -25.94114 -23.67119 -22.57852 -21.98696 -20.68366 -20.22115 -18.68643 -17.88037 -17.16592 -17.05842 -16.89368 -16.01283 -15.86769 -15.69464 -15.62040 -15.43085 -15.09718 -14.96353 -14.61982 -14.13351 -13.83593 -13.49914 -13.41405 -12.92437 -12.88305 -12.49739 -12.33945 -12.20447 -12.11343 -12.04270 -11.93998 -11.91837 -11.59597 -11.44789 -11.24984 -10.76043 -9.83928 -9.33621 -8.98367 -8.93295 -6.25144 0.53431 0.60201 1.48020 1.61081 1.76810 2.35158 2.69305 2.99879 3.18563 3.34209 3.44665 3.58345 3.74143 3.93623 3.97330 4.01201 4.08775 4.15917 4.21683 4.37117 4.39338 4.51484 4.57701 4.65585 4.70609 4.74021 4.92024 4.97920 4.99227 5.02459 5.15246 5.22005 5.23960 5.31990 5.51311 5.70104 5.73042 5.99155 6.00796 6.08717 6.29385 6.86014 7.62639 8.50103 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.033634 B = 0.003431 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.298955 B = 8160.087246 C = 8538.640692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.045 4.045 3 Si 1.147 2.853 4 H -0.264 1.264 5 H -0.259 1.259 6 H -0.273 1.273 7 C -0.487 4.487 8 H 0.091 0.909 9 O -0.254 6.254 10 C 0.116 3.884 11 C -0.206 4.206 12 C -0.048 4.048 13 C -0.150 4.150 14 C 0.097 3.903 15 N -0.525 5.525 16 C 0.040 3.960 17 C -0.125 4.125 18 C -0.132 4.132 19 C 0.042 3.958 20 H 0.094 0.906 21 C 0.042 3.958 22 F -0.226 7.226 23 C -0.059 4.059 24 C -0.240 4.240 25 H 0.260 0.740 26 H 0.113 0.887 27 H 0.148 0.852 28 H 0.101 0.899 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.136 0.864 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.190 -17.419 0.619 23.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.241 4.241 3 Si 0.963 3.037 4 H -0.189 1.189 5 H -0.183 1.183 6 H -0.198 1.198 7 C -0.563 4.563 8 H 0.108 0.892 9 O -0.162 6.162 10 C 0.066 3.934 11 C -0.225 4.225 12 C -0.066 4.066 13 C -0.151 4.151 14 C -0.029 4.029 15 N -0.249 5.249 16 C -0.087 4.087 17 C -0.163 4.163 18 C -0.170 4.170 19 C -0.066 4.066 20 H 0.112 0.888 21 C -0.013 4.013 22 F -0.207 7.207 23 C -0.078 4.078 24 C -0.259 4.259 25 H 0.068 0.932 26 H 0.131 0.869 27 H 0.165 0.835 28 H 0.119 0.881 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.153 0.847 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 14.279 -15.840 0.874 21.344 hybrid contribution 0.350 -1.293 -0.311 1.375 sum 14.629 -17.133 0.563 22.536 Atomic orbital electron populations 1.70683 1.07774 1.30077 1.46790 1.28390 0.96909 1.04918 0.93895 0.82545 0.73838 0.68760 0.78554 1.18910 1.18291 1.19813 1.22608 0.93635 0.82944 1.57114 0.89161 1.83646 1.36902 1.13220 1.82435 1.19834 0.91617 0.87357 0.94594 1.20478 0.99964 0.90596 1.11489 1.20863 0.93407 0.96662 0.95676 1.19575 0.93602 0.94383 1.07523 1.21205 0.98180 0.93304 0.90259 1.63779 1.44588 1.02326 1.14209 1.23081 0.94349 0.95245 0.96042 1.22695 0.99926 0.95699 0.97933 1.22814 0.96322 0.99684 0.98176 1.23079 0.95657 0.92964 0.94893 0.88756 1.22848 0.97732 0.82478 0.98246 1.92743 1.82340 1.48132 1.97528 1.20930 0.99486 0.91003 0.96374 1.21223 0.93057 1.00014 1.11647 0.93152 0.86933 0.83461 0.88129 0.92472 0.92988 0.92018 0.90773 0.89446 0.89622 0.90782 0.88772 0.89681 0.84668 0.86726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.93 13.70 21.61 0.30 -57.64 16 2 C -0.05 -2.61 5.49 84.83 0.47 -2.15 16 3 Si 1.15 48.32 29.92 68.60 2.05 50.37 16 4 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 5 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 6 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 7 C -0.49 -28.71 9.49 67.92 0.64 -28.07 16 8 H 0.09 4.96 5.20 -2.91 -0.02 4.94 16 9 O -0.25 -15.25 9.16 -22.79 -0.21 -15.46 16 10 C 0.12 5.75 6.65 22.58 0.15 5.90 16 11 C -0.21 -8.65 9.99 22.39 0.22 -8.43 16 12 C -0.05 -1.55 9.69 22.25 0.22 -1.34 16 13 C -0.15 -4.39 5.01 -19.83 -0.10 -4.49 16 14 C 0.10 1.99 3.84 85.56 0.33 2.32 16 15 N -0.52 -10.81 5.19 -865.06 -4.49 -15.29 16 16 C 0.04 0.84 5.49 86.78 0.48 1.31 16 17 C -0.12 -1.98 7.08 31.98 0.23 -1.75 16 18 C -0.13 -1.91 6.25 31.78 0.20 -1.71 16 19 C 0.04 0.70 3.80 45.26 0.17 0.87 16 20 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 21 C 0.04 0.62 5.60 71.98 0.40 1.02 16 22 F -0.23 -4.19 17.11 44.97 0.77 -3.42 16 23 C -0.06 -1.97 8.75 22.25 0.19 -1.77 16 24 C -0.24 -10.42 9.17 22.39 0.21 -10.21 16 25 H 0.26 17.11 7.97 -92.70 -0.74 16.37 16 26 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 27 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 28 H 0.10 1.70 6.33 -2.38 -0.02 1.69 16 29 H 0.06 1.01 6.59 -2.39 -0.02 1.00 16 30 H 0.05 1.03 6.70 -2.39 -0.02 1.02 16 31 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 1.02 7.86 -2.39 -0.02 1.00 16 36 H 0.09 1.17 6.55 -2.39 -0.02 1.16 16 37 H 0.09 1.09 6.76 -2.38 -0.02 1.08 16 38 H 0.14 3.61 7.27 -2.91 -0.02 3.58 16 39 H 0.11 5.16 5.64 -2.91 -0.02 5.15 16 Total: -1.00 -70.49 316.38 3.31 -67.18 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: 1.09 Total: 22.76 kcal Atomic # 6 Polarization: -52.31 SS G_CDS: 3.81 Total: -48.50 kcal Atomic # 7 Polarization: -68.74 SS G_CDS: -4.19 Total: -72.93 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.21 Total: -15.46 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.77 Total: -3.42 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 2.05 Total: 50.37 kcal Total: -70.49 3.31 -67.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293130040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.482 kcal (2) G-P(sol) polarization free energy of solvation -70.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds