Wall clock time and date at job start Wed Apr 15 2020 11:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86800 * 120.00254 * 2 1 4 4 H 1.48499 * 109.47128 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46931 * 299.99614 * 3 2 1 6 6 H 1.48490 * 109.47155 * 59.99256 * 3 2 1 7 7 C 1.39950 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00011 * 197.72795 * 7 2 1 9 9 C 1.41400 * 119.99509 * 17.72383 * 7 2 1 10 10 C 1.40707 * 120.24843 * 24.53120 * 9 7 2 11 11 C 1.37623 * 119.74849 * 180.22492 * 10 9 7 12 12 C 1.38630 * 120.24117 * 359.52215 * 11 10 9 13 13 C 1.50705 * 119.74253 * 180.27159 * 12 11 10 14 14 N 1.46904 * 109.46952 * 90.00584 * 13 12 11 15 15 C 1.47437 * 111.00199 * 69.86909 * 14 13 12 16 16 C 1.54316 * 107.23306 * 123.25998 * 15 14 13 17 17 C 1.55145 * 103.02016 * 22.28251 * 16 15 14 18 18 F 1.39901 * 110.98917 * 82.43708 * 17 16 15 19 19 C 1.52994 * 110.99117 * 206.21606 * 17 16 15 20 20 O 1.42904 * 109.47397 * 298.54755 * 19 17 16 21 21 C 1.47846 * 111.00086 * 190.71395 * 14 13 12 22 22 C 1.38629 * 120.50679 * 0.25281 * 12 11 10 23 23 C 1.37618 * 120.24753 * 359.97438 * 22 12 11 24 24 H 0.97005 * 119.99803 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.12916 * 0.02562 * 10 9 7 26 26 H 1.08001 * 119.87639 * 179.79220 * 11 10 9 27 27 H 1.09004 * 109.46969 * 209.99760 * 13 12 11 28 28 H 1.08991 * 109.47372 * 330.00041 * 13 12 11 29 29 H 1.09002 * 109.89113 * 242.66477 * 15 14 13 30 30 H 1.09001 * 109.89083 * 3.69123 * 15 14 13 31 31 H 1.09003 * 110.70708 * 140.66503 * 16 15 14 32 32 H 1.09001 * 110.70880 * 263.72798 * 16 15 14 33 33 H 1.09001 * 109.47138 * 58.54505 * 19 17 16 34 34 H 1.09005 * 109.47345 * 178.54678 * 19 17 16 35 35 H 0.96696 * 113.99815 * 179.97438 * 20 19 17 36 36 H 1.08997 * 110.37219 * 332.46507 * 21 14 13 37 37 H 1.08997 * 110.37156 * 94.80057 * 21 14 13 38 38 H 1.08002 * 119.88011 * 179.97438 * 22 12 11 39 39 H 1.08005 * 120.12709 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3963 -1.2126 6 1 1.8835 2.3964 1.2123 7 6 2.0080 -1.2120 0.0005 8 1 3.0494 -1.2341 0.2853 9 6 1.3512 -2.4076 -0.3717 10 6 0.2202 -2.3643 -1.2076 11 6 -0.4139 -3.5339 -1.5598 12 6 0.0638 -4.7522 -1.1021 13 6 -0.6356 -6.0266 -1.4997 14 7 -0.0476 -6.5401 -2.7441 15 6 1.3195 -7.0421 -2.5148 16 6 1.3497 -8.5139 -2.9775 17 6 0.1574 -8.5939 -3.9668 18 9 0.5260 -8.1306 -5.2344 19 6 -0.3943 -10.0187 -4.0463 20 8 0.6242 -10.8978 -4.5278 21 6 -0.8649 -7.6383 -3.3026 22 6 1.1801 -4.8072 -0.2819 23 6 1.8272 -3.6499 0.0867 24 1 -0.4850 0.8401 -0.0004 25 1 -0.1510 -1.4166 -1.5689 26 1 -1.2842 -3.5028 -2.1985 27 1 -0.5174 -6.7677 -0.7092 28 1 -1.6957 -5.8262 -1.6543 29 1 2.0320 -6.4562 -3.0956 30 1 1.5648 -6.9790 -1.4546 31 1 2.2876 -8.7392 -3.4852 32 1 1.1990 -9.1865 -2.1331 33 1 -0.7132 -10.3406 -3.0549 34 1 -1.2454 -10.0414 -4.7270 35 1 0.3442 -11.8202 -4.6033 36 1 -1.4038 -8.1527 -2.5069 37 1 -1.5621 -7.2522 -4.0461 38 1 1.5433 -5.7618 0.0691 39 1 2.6964 -3.6950 0.7261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338591407.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:00 Heat of formation + Delta-G solvation = -77.090642 kcal Electronic energy + Delta-G solvation = -21421.225524 eV Core-core repulsion = 18049.492498 eV Total energy + Delta-G solvation = -3371.733026 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -47.53547 -38.90017 -37.44256 -36.70688 -33.89841 -32.14842 -29.87195 -29.54471 -29.15364 -26.78839 -24.91133 -23.52446 -21.18363 -20.84105 -20.58466 -19.54648 -17.70005 -17.28217 -16.58663 -16.16390 -15.33407 -15.03175 -14.80612 -14.48809 -14.25071 -13.99592 -13.72677 -13.47520 -12.95695 -12.85583 -12.68205 -12.39187 -11.99894 -11.73524 -11.71648 -11.49546 -11.07364 -11.04576 -10.89359 -10.79553 -10.60771 -10.42574 -10.33067 -10.31043 -9.53992 -9.35123 -9.11288 -8.02540 -7.41005 -7.28310 -6.74342 -4.32582 2.74455 3.08536 3.10683 3.14157 3.17544 3.61424 3.94902 4.07807 4.38395 4.41810 4.53015 4.72302 4.80214 4.98894 5.03956 5.22398 5.42462 5.59341 5.68078 5.72976 5.82505 5.85050 5.99623 6.05730 6.21582 6.35387 6.38783 6.46251 6.97891 7.08431 7.18514 7.23239 7.30826 7.35921 7.42236 7.64315 7.89352 8.08591 8.16685 8.32750 8.67531 8.92239 9.00690 10.20205 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.043020 B = 0.003293 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.706944 B = 8500.095571 C = 8562.501798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.113 3.887 10 C -0.167 4.167 11 C -0.079 4.079 12 C -0.208 4.208 13 C 0.115 3.885 14 N -0.517 5.517 15 C 0.044 3.956 16 C -0.152 4.152 17 C 0.112 3.888 18 F -0.189 7.189 19 C 0.065 3.935 20 O -0.564 6.564 21 C 0.026 3.974 22 C -0.083 4.083 23 C -0.227 4.227 24 H 0.279 0.721 25 H 0.117 0.883 26 H 0.087 0.913 27 H 0.026 0.974 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.381 0.619 36 H 0.060 0.940 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.790 -15.769 -4.684 16.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.201 1.201 7 C -0.492 4.492 8 H 0.095 0.905 9 C 0.110 3.890 10 C -0.186 4.186 11 C -0.098 4.098 12 C -0.210 4.210 13 C -0.011 4.011 14 N -0.241 5.241 15 C -0.084 4.084 16 C -0.191 4.191 17 C 0.093 3.907 18 F -0.170 7.170 19 C -0.014 4.014 20 O -0.369 6.369 21 C -0.102 4.102 22 C -0.102 4.102 23 C -0.247 4.247 24 H 0.090 0.910 25 H 0.135 0.865 26 H 0.105 0.895 27 H 0.044 0.956 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.228 0.772 36 H 0.078 0.922 37 H 0.109 0.891 38 H 0.100 0.900 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.636 -14.610 -5.046 15.680 hybrid contribution -0.062 -0.341 0.572 0.669 sum -2.698 -14.951 -4.474 15.838 Atomic orbital electron populations 1.69838 1.07582 1.29054 1.35359 1.25910 0.94713 1.01302 0.92243 0.86293 0.81044 0.81050 0.78522 1.18413 1.19693 1.20052 1.19628 0.98069 0.91303 1.40225 0.90491 1.17622 0.91069 0.91959 0.88329 1.21305 0.99336 0.96788 1.01163 1.20480 0.98343 0.92512 0.98431 1.18790 1.01399 0.92624 1.08147 1.20938 0.97559 0.94666 0.87942 1.63785 1.01343 1.30049 1.28892 1.22878 0.91822 0.92230 1.01433 1.23312 0.98802 0.98503 0.98481 1.21937 0.96411 0.91699 0.80649 1.92872 1.92768 1.90022 1.41308 1.22593 0.90532 0.89116 0.99121 1.86537 1.39498 1.21899 1.88949 1.23556 0.95797 0.91649 0.99214 1.20339 0.95510 0.96074 0.98296 1.20923 1.03690 0.92949 1.07145 0.90971 0.86534 0.89525 0.95552 0.91544 0.90213 0.91442 0.89460 0.90171 0.91800 0.92313 0.77187 0.92217 0.89143 0.89964 0.89196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.64 10.95 55.55 0.61 -20.03 16 2 C 0.08 1.92 5.14 -17.34 -0.09 1.84 16 3 Si 0.91 18.84 29.59 -169.99 -5.03 13.81 16 4 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.46 -12.41 9.06 -37.74 -0.34 -12.75 16 8 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 9 C 0.11 3.03 5.57 -106.83 -0.60 2.44 16 10 C -0.17 -4.38 8.70 -38.87 -0.34 -4.72 16 11 C -0.08 -1.86 9.67 -39.66 -0.38 -2.24 16 12 C -0.21 -4.49 5.13 -104.33 -0.54 -5.02 16 13 C 0.12 2.00 4.75 -4.97 -0.02 1.98 16 14 N -0.52 -8.50 5.15 -232.70 -1.20 -9.70 16 15 C 0.04 0.68 6.26 -2.84 -0.02 0.67 16 16 C -0.15 -1.95 5.97 -24.91 -0.15 -2.10 16 17 C 0.11 1.42 1.38 -88.49 -0.12 1.30 16 18 F -0.19 -3.01 17.01 2.25 0.04 -2.97 16 19 C 0.07 0.60 6.33 37.15 0.24 0.84 16 20 O -0.56 -5.44 13.39 -35.23 -0.47 -5.91 16 21 C 0.03 0.34 5.96 -2.30 -0.01 0.33 16 22 C -0.08 -1.84 8.70 -39.66 -0.35 -2.19 16 23 C -0.23 -5.60 9.80 -38.87 -0.38 -5.99 16 24 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 25 H 0.12 3.18 6.16 -52.49 -0.32 2.85 16 26 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 27 H 0.03 0.42 7.90 -51.93 -0.41 0.01 16 28 H 0.07 1.09 8.01 -51.93 -0.42 0.68 16 29 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.07 1.06 5.47 -51.93 -0.28 0.78 16 31 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.08 0.88 8.04 -51.93 -0.42 0.47 16 33 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.38 1.67 9.12 45.56 0.42 2.09 16 36 H 0.06 0.64 7.68 -51.93 -0.40 0.24 16 37 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.08 1.60 6.90 -52.49 -0.36 1.23 16 39 H 0.09 2.10 8.06 -52.48 -0.42 1.67 16 LS Contribution 322.09 15.07 4.85 4.85 Total: -1.00 -30.12 322.09 -9.00 -39.12 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -4.70 Total: 6.47 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: -3.10 Total: -25.63 kcal Atomic # 7 Polarization: -29.14 SS G_CDS: -0.59 Total: -29.73 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: -0.47 Total: -5.91 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.04 Total: -2.97 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.12 -9.00 -39.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338591407.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.969 kcal (2) G-P(sol) polarization free energy of solvation -30.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds