Wall clock time and date at job start Wed Apr 15 2020 11:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86800 * 120.00254 * 2 1 4 4 H 1.48499 * 109.47128 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46931 * 299.99614 * 3 2 1 6 6 H 1.48490 * 109.47155 * 59.99256 * 3 2 1 7 7 C 1.39950 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00011 * 197.72795 * 7 2 1 9 9 C 1.41400 * 119.99509 * 17.72383 * 7 2 1 10 10 C 1.40707 * 120.24843 * 24.53120 * 9 7 2 11 11 C 1.37623 * 119.74849 * 180.22492 * 10 9 7 12 12 C 1.38630 * 120.24117 * 359.52215 * 11 10 9 13 13 C 1.50705 * 119.74253 * 180.27159 * 12 11 10 14 14 N 1.46904 * 109.46952 * 90.00584 * 13 12 11 15 15 C 1.47437 * 111.00199 * 69.86909 * 14 13 12 16 16 C 1.54316 * 107.23306 * 123.25998 * 15 14 13 17 17 C 1.55145 * 103.02016 * 22.28251 * 16 15 14 18 18 F 1.39901 * 110.98917 * 82.43708 * 17 16 15 19 19 C 1.52994 * 110.99117 * 206.21606 * 17 16 15 20 20 O 1.42904 * 109.47397 * 298.54755 * 19 17 16 21 21 C 1.47846 * 111.00086 * 190.71395 * 14 13 12 22 22 C 1.38629 * 120.50679 * 0.25281 * 12 11 10 23 23 C 1.37618 * 120.24753 * 359.97438 * 22 12 11 24 24 H 0.97005 * 119.99803 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.12916 * 0.02562 * 10 9 7 26 26 H 1.08001 * 119.87639 * 179.79220 * 11 10 9 27 27 H 1.09004 * 109.46969 * 209.99760 * 13 12 11 28 28 H 1.08991 * 109.47372 * 330.00041 * 13 12 11 29 29 H 1.09002 * 109.89113 * 242.66477 * 15 14 13 30 30 H 1.09001 * 109.89083 * 3.69123 * 15 14 13 31 31 H 1.09003 * 110.70708 * 140.66503 * 16 15 14 32 32 H 1.09001 * 110.70880 * 263.72798 * 16 15 14 33 33 H 1.09001 * 109.47138 * 58.54505 * 19 17 16 34 34 H 1.09005 * 109.47345 * 178.54678 * 19 17 16 35 35 H 0.96696 * 113.99815 * 179.97438 * 20 19 17 36 36 H 1.08997 * 110.37219 * 332.46507 * 21 14 13 37 37 H 1.08997 * 110.37156 * 94.80057 * 21 14 13 38 38 H 1.08002 * 119.88011 * 179.97438 * 22 12 11 39 39 H 1.08005 * 120.12709 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3963 -1.2126 6 1 1.8835 2.3964 1.2123 7 6 2.0080 -1.2120 0.0005 8 1 3.0494 -1.2341 0.2853 9 6 1.3512 -2.4076 -0.3717 10 6 0.2202 -2.3643 -1.2076 11 6 -0.4139 -3.5339 -1.5598 12 6 0.0638 -4.7522 -1.1021 13 6 -0.6356 -6.0266 -1.4997 14 7 -0.0476 -6.5401 -2.7441 15 6 1.3195 -7.0421 -2.5148 16 6 1.3497 -8.5139 -2.9775 17 6 0.1574 -8.5939 -3.9668 18 9 0.5260 -8.1306 -5.2344 19 6 -0.3943 -10.0187 -4.0463 20 8 0.6242 -10.8978 -4.5278 21 6 -0.8649 -7.6383 -3.3026 22 6 1.1801 -4.8072 -0.2819 23 6 1.8272 -3.6499 0.0867 24 1 -0.4850 0.8401 -0.0004 25 1 -0.1510 -1.4166 -1.5689 26 1 -1.2842 -3.5028 -2.1985 27 1 -0.5174 -6.7677 -0.7092 28 1 -1.6957 -5.8262 -1.6543 29 1 2.0320 -6.4562 -3.0956 30 1 1.5648 -6.9790 -1.4546 31 1 2.2876 -8.7392 -3.4852 32 1 1.1990 -9.1865 -2.1331 33 1 -0.7132 -10.3406 -3.0549 34 1 -1.2454 -10.0414 -4.7270 35 1 0.3442 -11.8202 -4.6033 36 1 -1.4038 -8.1527 -2.5069 37 1 -1.5621 -7.2522 -4.0461 38 1 1.5433 -5.7618 0.0691 39 1 2.6964 -3.6950 0.7261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338591407.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:59 Heat of formation + Delta-G solvation = -97.670399 kcal Electronic energy + Delta-G solvation = -21422.117930 eV Core-core repulsion = 18049.492498 eV Total energy + Delta-G solvation = -3372.625432 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.61797 -40.21183 -38.96307 -37.58191 -35.69019 -33.53292 -31.45065 -31.09930 -30.52356 -28.32050 -26.08046 -24.98119 -22.89246 -22.41220 -21.65790 -21.05015 -19.21466 -18.39000 -17.55942 -17.26623 -17.10658 -16.24627 -16.02952 -15.80133 -15.59932 -15.49019 -15.03623 -14.81811 -14.36716 -14.15845 -13.81696 -13.73720 -13.70369 -13.26146 -13.11020 -12.91125 -12.70940 -12.65952 -12.37303 -12.10313 -11.92165 -11.78141 -11.52837 -11.31874 -11.20768 -11.01717 -10.99467 -9.33766 -9.28372 -9.11677 -8.62916 -6.31899 0.95717 1.17469 1.37286 1.49315 1.52663 2.20859 2.65411 2.88388 3.06410 3.43249 3.53867 3.63293 3.83968 3.97270 4.12017 4.22794 4.29163 4.34756 4.44045 4.51387 4.57323 4.58063 4.69940 4.80216 4.84776 4.92124 5.02963 5.08784 5.17049 5.22441 5.40074 5.48637 5.72700 5.91783 6.04360 6.12621 6.16929 6.30951 6.41160 6.73293 6.85844 6.96076 7.06502 8.34316 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.043020 B = 0.003293 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.706944 B = 8500.095571 C = 8562.501798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.034 3.966 3 Si 0.981 3.019 4 H -0.260 1.260 5 H -0.265 1.265 6 H -0.264 1.264 7 C -0.503 4.503 8 H 0.072 0.928 9 C 0.079 3.921 10 C -0.192 4.192 11 C -0.088 4.088 12 C -0.195 4.195 13 C 0.122 3.878 14 N -0.542 5.542 15 C 0.043 3.957 16 C -0.143 4.143 17 C 0.101 3.899 18 F -0.215 7.215 19 C 0.071 3.929 20 O -0.587 6.587 21 C 0.029 3.971 22 C -0.082 4.082 23 C -0.245 4.245 24 H 0.287 0.713 25 H 0.097 0.903 26 H 0.101 0.899 27 H 0.049 0.951 28 H 0.079 0.921 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.403 0.597 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.115 0.885 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.573 -17.992 -4.551 18.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.189 1.189 7 C -0.533 4.533 8 H 0.090 0.910 9 C 0.077 3.923 10 C -0.212 4.212 11 C -0.106 4.106 12 C -0.197 4.197 13 C -0.005 4.005 14 N -0.266 5.266 15 C -0.085 4.085 16 C -0.182 4.182 17 C 0.082 3.918 18 F -0.195 7.195 19 C -0.008 4.008 20 O -0.396 6.396 21 C -0.099 4.099 22 C -0.100 4.100 23 C -0.264 4.264 24 H 0.098 0.902 25 H 0.115 0.885 26 H 0.119 0.881 27 H 0.067 0.933 28 H 0.097 0.903 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.124 0.876 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.254 0.746 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.133 0.867 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.431 -16.873 -4.920 17.908 hybrid contribution 0.140 0.174 0.482 0.531 sum -3.291 -16.699 -4.438 17.589 Atomic orbital electron populations 1.69886 1.08963 1.30371 1.35994 1.26748 0.95511 1.04480 0.91269 0.85181 0.79381 0.76296 0.78965 1.18314 1.18959 1.18862 1.19849 0.98194 0.92700 1.42562 0.90969 1.17959 0.91948 0.93112 0.89317 1.21260 1.00337 0.97076 1.02483 1.20738 0.98700 0.92636 0.98575 1.19294 1.00484 0.93970 1.05911 1.20855 0.97542 0.92907 0.89176 1.63563 1.02136 1.32578 1.28372 1.22794 0.91006 0.93835 1.00826 1.23255 0.98798 0.96817 0.99327 1.22267 0.96231 0.93939 0.79348 1.92823 1.93041 1.90578 1.43081 1.22560 0.90234 0.86789 1.01181 1.86473 1.40306 1.23705 1.89160 1.23596 0.95451 0.90865 0.99974 1.20675 0.95146 0.96562 0.97624 1.21153 1.04317 0.93336 1.07612 0.90224 0.88545 0.88071 0.93293 0.90302 0.93136 0.91541 0.90248 0.87569 0.88873 0.90980 0.74589 0.88968 0.89114 0.86697 0.88782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.49 10.95 21.83 0.24 -44.25 16 2 C 0.03 1.79 5.14 85.26 0.44 2.23 16 3 Si 0.98 39.50 29.59 68.60 2.03 41.53 16 4 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 5 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 6 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 7 C -0.50 -28.21 9.06 23.46 0.21 -28.00 16 8 H 0.07 3.93 7.91 -2.91 -0.02 3.91 16 9 C 0.08 4.42 5.57 -21.29 -0.12 4.30 16 10 C -0.19 -10.50 8.70 22.73 0.20 -10.30 16 11 C -0.09 -4.17 9.67 22.22 0.21 -3.96 16 12 C -0.20 -8.18 5.13 -19.68 -0.10 -8.28 16 13 C 0.12 3.85 4.75 85.56 0.41 4.26 16 14 N -0.54 -16.57 5.15 -890.12 -4.58 -21.15 16 15 C 0.04 1.27 6.26 86.65 0.54 1.82 16 16 C -0.14 -3.30 5.97 31.78 0.19 -3.11 16 17 C 0.10 2.28 1.38 -9.41 -0.01 2.27 16 18 F -0.21 -6.59 17.01 44.97 0.76 -5.82 16 19 C 0.07 1.02 6.33 71.98 0.46 1.48 16 20 O -0.59 -9.45 13.39 -148.98 -1.99 -11.44 16 21 C 0.03 0.64 5.96 86.77 0.52 1.16 16 22 C -0.08 -3.52 8.70 22.22 0.19 -3.33 16 23 C -0.24 -12.28 9.80 22.73 0.22 -12.06 16 24 H 0.29 13.91 8.30 -92.70 -0.77 13.14 16 25 H 0.10 5.55 6.16 -2.91 -0.02 5.54 16 26 H 0.10 4.40 8.06 -2.91 -0.02 4.38 16 27 H 0.05 1.35 7.90 -2.38 -0.02 1.33 16 28 H 0.08 2.32 8.01 -2.39 -0.02 2.30 16 29 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.07 1.94 5.47 -2.39 -0.01 1.93 16 31 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.11 1.90 8.04 -2.39 -0.02 1.88 16 33 H 0.09 0.82 8.10 -2.39 -0.02 0.80 16 34 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 35 H 0.40 2.17 9.12 -74.06 -0.68 1.49 16 36 H 0.09 1.50 7.68 -2.39 -0.02 1.48 16 37 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.12 4.16 6.90 -2.91 -0.02 4.14 16 39 H 0.09 4.49 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -68.04 322.09 0.20 -67.84 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 0.38 Total: 24.82 kcal Atomic # 6 Polarization: -54.89 SS G_CDS: 3.36 Total: -51.53 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: -4.34 Total: -65.40 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -1.99 Total: -11.44 kcal Atomic # 9 Polarization: -6.59 SS G_CDS: 0.76 Total: -5.82 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Total: -68.04 0.20 -67.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338591407.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.826 kcal (2) G-P(sol) polarization free energy of solvation -68.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds