Wall clock time and date at job start Wed Apr 15 2020 11:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86798 * 119.99716 * 2 1 4 4 H 1.48499 * 109.47110 * 239.99718 * 3 2 1 5 5 H 1.48498 * 109.47313 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47064 * 120.00177 * 3 2 1 7 7 C 1.39946 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99642 * 161.79518 * 7 2 1 9 9 C 1.41392 * 120.00324 * 341.51421 * 7 2 1 10 10 C 1.40715 * 120.24571 * 335.85073 * 9 7 2 11 11 C 1.37617 * 119.74779 * 179.76369 * 10 9 7 12 12 C 1.38635 * 120.24755 * 0.51058 * 11 10 9 13 13 C 1.50699 * 119.75078 * 179.76122 * 12 11 10 14 14 N 1.46903 * 109.47004 * 269.97775 * 13 12 11 15 15 C 1.47897 * 110.99682 * 69.87533 * 14 13 12 16 16 C 1.53997 * 107.05870 * 214.15379 * 15 14 13 17 17 C 1.54599 * 105.13583 * 1.22711 * 16 15 14 18 18 F 1.39906 * 110.72101 * 263.60172 * 17 16 15 19 19 C 1.52995 * 110.72443 * 140.49582 * 17 16 15 20 20 O 1.42902 * 109.47257 * 61.44848 * 19 17 16 21 21 C 1.48530 * 111.00122 * 312.48049 * 14 13 12 22 22 C 1.38636 * 120.49972 * 359.73977 * 12 11 10 23 23 C 1.37627 * 120.24783 * 359.97438 * 22 12 11 24 24 H 0.96999 * 120.00477 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.12533 * 0.02562 * 10 9 7 26 26 H 1.07999 * 119.87843 * 180.27237 * 11 10 9 27 27 H 1.08998 * 109.47081 * 29.97967 * 13 12 11 28 28 H 1.09005 * 109.46709 * 149.97899 * 13 12 11 29 29 H 1.09002 * 109.92049 * 333.50803 * 15 14 13 30 30 H 1.08999 * 109.91954 * 94.60256 * 15 14 13 31 31 H 1.08990 * 110.31115 * 120.13912 * 16 15 14 32 32 H 1.08997 * 110.30843 * 242.31283 * 16 15 14 33 33 H 1.08996 * 109.47128 * 181.44981 * 19 17 16 34 34 H 1.08999 * 109.47199 * 301.45267 * 19 17 16 35 35 H 0.96699 * 114.00277 * 179.97438 * 20 19 17 36 36 H 1.09009 * 110.66529 * 278.15725 * 21 14 13 37 37 H 1.08999 * 110.67093 * 41.28123 * 21 14 13 38 38 H 1.07999 * 119.87703 * 180.02562 * 22 12 11 39 39 H 1.08000 * 120.12283 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2771 2.7465 0.0006 6 1 3.0959 1.6964 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0474 -1.2354 -0.2917 9 6 1.3558 -2.4047 0.3893 10 6 0.2295 -2.3547 1.2314 11 6 -0.4003 -3.5216 1.5995 12 6 0.0772 -4.7439 1.1524 13 6 -0.6179 -6.0152 1.5667 14 7 -0.0227 -6.5148 2.8134 15 6 -0.3633 -5.6356 3.9528 16 6 0.8477 -5.6394 4.9041 17 6 1.8969 -6.5443 4.2183 18 9 1.8363 -7.8461 4.7273 19 6 3.3031 -5.9649 4.3847 20 8 3.6296 -5.8986 5.7744 21 6 1.4604 -6.5159 2.7321 22 6 1.1891 -4.8055 0.3266 23 6 1.8312 -3.6509 -0.0589 24 1 -0.4851 0.8400 0.0004 25 1 -0.1417 -1.4038 1.5841 26 1 -1.2675 -3.4853 2.2422 27 1 -1.6776 -5.8149 1.7248 28 1 -0.5026 -6.7642 0.7833 29 1 -0.5527 -4.6229 3.5969 30 1 -1.2445 -6.0189 4.4672 31 1 1.2390 -4.6291 5.0224 32 1 0.5666 -6.0530 5.8726 33 1 4.0223 -6.6040 3.8726 34 1 3.3366 -4.9635 3.9555 35 1 4.5094 -5.5403 5.9551 36 1 1.8163 -7.4039 2.2095 37 1 1.8196 -5.6106 2.2427 38 1 1.5522 -5.7632 -0.0161 39 1 2.6970 -3.7013 -0.7026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338591408.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:03 Heat of formation + Delta-G solvation = -76.804531 kcal Electronic energy + Delta-G solvation = -22221.631684 eV Core-core repulsion = 18849.911065 eV Total energy + Delta-G solvation = -3371.720620 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -47.32266 -39.15513 -37.27161 -36.44765 -33.94192 -32.14746 -29.86723 -29.74323 -28.78637 -26.71434 -25.03382 -23.46604 -21.31511 -20.94692 -19.99354 -19.74231 -17.48030 -17.32727 -16.41842 -15.95568 -15.43748 -14.94780 -14.69847 -14.25169 -14.08683 -14.02976 -13.79881 -13.46423 -13.05776 -12.70901 -12.40942 -12.36054 -12.11794 -11.71964 -11.38487 -11.28977 -11.12490 -10.99395 -10.78641 -10.71453 -10.50698 -10.47585 -10.38680 -10.07977 -9.87504 -9.51704 -9.22980 -7.98583 -7.58784 -7.43385 -6.88418 -4.47596 2.63412 2.90905 2.99001 3.00522 3.09589 3.83005 3.88766 4.31931 4.47741 4.66019 4.72581 4.84069 5.07578 5.29798 5.38466 5.55220 5.61712 5.67447 5.73233 5.90499 5.98046 6.06691 6.14032 6.19596 6.23124 6.32548 6.41906 6.46065 6.81290 6.93916 7.07135 7.16423 7.27266 7.37058 7.47350 7.49825 7.72550 7.92062 7.97886 8.16738 8.50899 8.76694 8.84093 10.05714 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.021166 B = 0.004928 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.535310 B = 5680.733434 C = 6270.980853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.077 3.923 3 Si 0.908 3.092 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.462 4.462 8 H 0.077 0.923 9 C 0.113 3.887 10 C -0.167 4.167 11 C -0.089 4.089 12 C -0.253 4.253 13 C 0.103 3.897 14 N -0.508 5.508 15 C 0.025 3.975 16 C -0.137 4.137 17 C 0.119 3.881 18 F -0.198 7.198 19 C 0.062 3.938 20 O -0.566 6.566 21 C 0.012 3.988 22 C -0.079 4.079 23 C -0.229 4.229 24 H 0.282 0.718 25 H 0.117 0.883 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.380 0.620 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.240 -5.926 6.253 9.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.491 4.491 8 H 0.096 0.904 9 C 0.111 3.889 10 C -0.187 4.187 11 C -0.108 4.108 12 C -0.256 4.256 13 C -0.024 4.024 14 N -0.230 5.230 15 C -0.103 4.103 16 C -0.176 4.176 17 C 0.100 3.900 18 F -0.178 7.178 19 C -0.017 4.017 20 O -0.371 6.371 21 C -0.116 4.116 22 C -0.098 4.098 23 C -0.248 4.248 24 H 0.093 0.907 25 H 0.134 0.866 26 H 0.104 0.896 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.227 0.773 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.181 -6.597 6.377 9.431 hybrid contribution 1.163 1.834 -0.357 2.201 sum 3.344 -4.763 6.020 8.373 Atomic orbital electron populations 1.69811 1.07645 1.29531 1.34363 1.25926 0.94714 1.01398 0.92136 0.86375 0.80215 0.80182 0.80055 1.18918 1.20239 1.18781 1.19588 0.98320 0.91415 1.39778 0.90443 1.17622 0.90973 0.91994 0.88329 1.21311 0.99548 0.96758 1.01049 1.20552 0.98263 0.92715 0.99251 1.19581 1.02221 0.94212 1.09583 1.20977 0.97444 0.93457 0.90521 1.65251 1.06580 1.46942 1.04254 1.22980 0.97541 0.97820 0.91977 1.22860 0.94968 1.00208 0.99524 1.21762 0.94533 0.78859 0.94842 1.92836 1.97389 1.38999 1.88582 1.22663 0.95107 1.00786 0.83105 1.86491 1.38994 1.87829 1.23825 1.23909 0.90390 1.04085 0.93248 1.20391 0.95674 0.96379 0.97359 1.20969 1.04058 0.92824 1.06979 0.90663 0.86553 0.89553 0.91422 0.91311 0.91475 0.90834 0.89902 0.90180 0.92514 0.91188 0.77269 0.89718 0.88906 0.89503 0.89047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.69 10.98 55.55 0.61 -19.09 16 2 C 0.08 1.86 5.13 -17.34 -0.09 1.77 16 3 Si 0.91 17.94 29.60 -169.99 -5.03 12.91 16 4 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.46 -11.72 9.05 -37.74 -0.34 -12.06 16 8 H 0.08 1.89 7.91 -52.49 -0.42 1.47 16 9 C 0.11 2.87 5.58 -106.83 -0.60 2.27 16 10 C -0.17 -4.10 8.70 -38.87 -0.34 -4.44 16 11 C -0.09 -1.93 8.15 -39.66 -0.32 -2.25 16 12 C -0.25 -5.08 3.98 -104.33 -0.42 -5.49 16 13 C 0.10 1.78 5.69 -4.97 -0.03 1.75 16 14 N -0.51 -8.45 5.54 -231.89 -1.28 -9.73 16 15 C 0.02 0.39 6.46 -2.76 -0.02 0.37 16 16 C -0.14 -2.07 6.06 -25.37 -0.15 -2.22 16 17 C 0.12 1.83 1.44 -88.76 -0.13 1.70 16 18 F -0.20 -3.40 16.95 2.25 0.04 -3.36 16 19 C 0.06 0.81 6.19 37.16 0.23 1.04 16 20 O -0.57 -7.14 13.37 -35.23 -0.47 -7.61 16 21 C 0.01 0.19 5.30 -1.90 -0.01 0.18 16 22 C -0.08 -1.63 7.45 -39.66 -0.30 -1.93 16 23 C -0.23 -5.26 9.80 -38.87 -0.38 -5.64 16 24 H 0.28 6.43 8.30 -40.82 -0.34 6.10 16 25 H 0.12 2.99 6.16 -52.49 -0.32 2.66 16 26 H 0.09 1.73 7.16 -52.49 -0.38 1.35 16 27 H 0.07 1.13 8.02 -51.93 -0.42 0.71 16 28 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 29 H 0.07 1.13 4.84 -51.93 -0.25 0.88 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.08 1.23 7.85 -51.93 -0.41 0.82 16 32 H 0.08 1.17 8.12 -51.93 -0.42 0.75 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 35 H 0.38 2.87 9.12 45.56 0.42 3.29 16 36 H 0.08 1.29 8.14 -51.92 -0.42 0.87 16 37 H 0.09 1.61 4.75 -51.93 -0.25 1.37 16 38 H 0.09 1.60 8.05 -52.49 -0.42 1.17 16 39 H 0.09 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 315.70 15.07 4.76 4.76 Total: -1.00 -27.66 315.70 -8.80 -36.46 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -4.53 Total: 10.62 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: -2.89 Total: -24.96 kcal Atomic # 7 Polarization: -28.14 SS G_CDS: -0.67 Total: -28.82 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -0.47 Total: -7.61 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.04 Total: -3.36 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.66 -8.80 -36.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338591408.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.345 kcal (2) G-P(sol) polarization free energy of solvation -27.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds