Wall clock time and date at job start Wed Apr 15 2020 11:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86798 * 119.99716 * 2 1 4 4 H 1.48499 * 109.47110 * 239.99718 * 3 2 1 5 5 H 1.48498 * 109.47313 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47064 * 120.00177 * 3 2 1 7 7 C 1.39946 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99642 * 161.79518 * 7 2 1 9 9 C 1.41392 * 120.00324 * 341.51421 * 7 2 1 10 10 C 1.40715 * 120.24571 * 335.85073 * 9 7 2 11 11 C 1.37617 * 119.74779 * 179.76369 * 10 9 7 12 12 C 1.38635 * 120.24755 * 0.51058 * 11 10 9 13 13 C 1.50699 * 119.75078 * 179.76122 * 12 11 10 14 14 N 1.46903 * 109.47004 * 269.97775 * 13 12 11 15 15 C 1.47897 * 110.99682 * 69.87533 * 14 13 12 16 16 C 1.53997 * 107.05870 * 214.15379 * 15 14 13 17 17 C 1.54599 * 105.13583 * 1.22711 * 16 15 14 18 18 F 1.39906 * 110.72101 * 263.60172 * 17 16 15 19 19 C 1.52995 * 110.72443 * 140.49582 * 17 16 15 20 20 O 1.42902 * 109.47257 * 61.44848 * 19 17 16 21 21 C 1.48530 * 111.00122 * 312.48049 * 14 13 12 22 22 C 1.38636 * 120.49972 * 359.73977 * 12 11 10 23 23 C 1.37627 * 120.24783 * 359.97438 * 22 12 11 24 24 H 0.96999 * 120.00477 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.12533 * 0.02562 * 10 9 7 26 26 H 1.07999 * 119.87843 * 180.27237 * 11 10 9 27 27 H 1.08998 * 109.47081 * 29.97967 * 13 12 11 28 28 H 1.09005 * 109.46709 * 149.97899 * 13 12 11 29 29 H 1.09002 * 109.92049 * 333.50803 * 15 14 13 30 30 H 1.08999 * 109.91954 * 94.60256 * 15 14 13 31 31 H 1.08990 * 110.31115 * 120.13912 * 16 15 14 32 32 H 1.08997 * 110.30843 * 242.31283 * 16 15 14 33 33 H 1.08996 * 109.47128 * 181.44981 * 19 17 16 34 34 H 1.08999 * 109.47199 * 301.45267 * 19 17 16 35 35 H 0.96699 * 114.00277 * 179.97438 * 20 19 17 36 36 H 1.09009 * 110.66529 * 278.15725 * 21 14 13 37 37 H 1.08999 * 110.67093 * 41.28123 * 21 14 13 38 38 H 1.07999 * 119.87703 * 180.02562 * 22 12 11 39 39 H 1.08000 * 120.12283 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2771 2.7465 0.0006 6 1 3.0959 1.6964 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0474 -1.2354 -0.2917 9 6 1.3558 -2.4047 0.3893 10 6 0.2295 -2.3547 1.2314 11 6 -0.4003 -3.5216 1.5995 12 6 0.0772 -4.7439 1.1524 13 6 -0.6179 -6.0152 1.5667 14 7 -0.0227 -6.5148 2.8134 15 6 -0.3633 -5.6356 3.9528 16 6 0.8477 -5.6394 4.9041 17 6 1.8969 -6.5443 4.2183 18 9 1.8363 -7.8461 4.7273 19 6 3.3031 -5.9649 4.3847 20 8 3.6296 -5.8986 5.7744 21 6 1.4604 -6.5159 2.7321 22 6 1.1891 -4.8055 0.3266 23 6 1.8312 -3.6509 -0.0589 24 1 -0.4851 0.8400 0.0004 25 1 -0.1417 -1.4038 1.5841 26 1 -1.2675 -3.4853 2.2422 27 1 -1.6776 -5.8149 1.7248 28 1 -0.5026 -6.7642 0.7833 29 1 -0.5527 -4.6229 3.5969 30 1 -1.2445 -6.0189 4.4672 31 1 1.2390 -4.6291 5.0224 32 1 0.5666 -6.0530 5.8726 33 1 4.0223 -6.6040 3.8726 34 1 3.3366 -4.9635 3.9555 35 1 4.5094 -5.5403 5.9551 36 1 1.8163 -7.4039 2.2095 37 1 1.8196 -5.6106 2.2427 38 1 1.5522 -5.7632 -0.0161 39 1 2.6970 -3.7013 -0.7026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338591408.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:02 Heat of formation + Delta-G solvation = -94.874926 kcal Electronic energy + Delta-G solvation = -22222.415275 eV Core-core repulsion = 18849.911065 eV Total energy + Delta-G solvation = -3372.504211 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.59344 -40.61003 -38.73392 -37.59262 -35.64788 -33.58624 -31.46963 -31.32249 -30.20293 -28.22405 -26.43975 -24.89094 -23.00278 -22.44273 -21.30422 -21.25041 -19.24016 -18.37348 -17.64085 -17.25576 -17.11337 -16.41682 -15.93318 -15.67145 -15.61986 -15.46236 -15.17571 -14.89340 -14.39643 -14.22505 -13.86209 -13.74216 -13.57921 -13.38041 -13.00943 -12.72779 -12.57545 -12.52374 -12.22866 -12.17414 -11.99307 -11.74909 -11.61058 -11.55953 -11.25728 -11.07124 -11.00533 -9.41407 -9.31392 -9.20869 -8.66153 -6.35110 0.92385 1.11811 1.36732 1.47022 1.51139 2.18350 2.66271 2.86015 3.10785 3.46600 3.53916 3.62591 3.76710 3.98669 4.15508 4.25400 4.33216 4.37044 4.46718 4.49696 4.55107 4.60577 4.75110 4.87034 4.89970 4.96195 5.04727 5.08815 5.14158 5.22720 5.35431 5.43918 5.67369 5.82129 5.94703 6.04188 6.08797 6.24382 6.37567 6.68918 6.78544 6.92768 7.02103 8.29912 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.021166 B = 0.004928 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.535310 B = 5680.733434 C = 6270.980853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.037 3.963 3 Si 0.978 3.022 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.261 1.261 7 C -0.500 4.500 8 H 0.075 0.925 9 C 0.083 3.917 10 C -0.191 4.191 11 C -0.089 4.089 12 C -0.235 4.235 13 C 0.107 3.893 14 N -0.508 5.508 15 C 0.023 3.977 16 C -0.135 4.135 17 C 0.114 3.886 18 F -0.208 7.208 19 C 0.066 3.934 20 O -0.581 6.581 21 C 0.014 3.986 22 C -0.074 4.074 23 C -0.241 4.241 24 H 0.288 0.712 25 H 0.096 0.904 26 H 0.101 0.899 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.054 0.946 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.402 0.598 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.116 0.884 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.644 -6.908 6.698 10.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.178 4.178 3 Si 0.798 3.202 4 H -0.184 1.184 5 H -0.193 1.193 6 H -0.185 1.185 7 C -0.530 4.530 8 H 0.093 0.907 9 C 0.080 3.920 10 C -0.211 4.211 11 C -0.108 4.108 12 C -0.238 4.238 13 C -0.020 4.020 14 N -0.230 5.230 15 C -0.104 4.104 16 C -0.174 4.174 17 C 0.095 3.905 18 F -0.188 7.188 19 C -0.013 4.013 20 O -0.390 6.390 21 C -0.115 4.115 22 C -0.093 4.093 23 C -0.261 4.261 24 H 0.098 0.902 25 H 0.114 0.886 26 H 0.119 0.881 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.252 0.748 36 H 0.113 0.887 37 H 0.097 0.903 38 H 0.133 0.867 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.601 -7.592 6.830 10.538 hybrid contribution 1.003 1.964 -0.434 2.248 sum 3.604 -5.628 6.396 9.250 Atomic orbital electron populations 1.69868 1.09010 1.30612 1.35451 1.26718 0.95410 1.04437 0.91224 0.85318 0.78875 0.75888 0.80079 1.18365 1.19325 1.18487 1.19826 0.98546 0.92716 1.41879 0.90696 1.17944 0.91793 0.93050 0.89187 1.21246 1.00474 0.96995 1.02341 1.20748 0.98426 0.92547 0.99083 1.19932 1.01390 0.94895 1.07578 1.21007 0.97617 0.92100 0.91253 1.65275 1.07040 1.46740 1.03965 1.23025 0.98429 0.97006 0.91976 1.22838 0.94719 1.00203 0.99591 1.21881 0.95978 0.78386 0.94245 1.92814 1.97527 1.39821 1.88683 1.22563 0.94176 1.00860 0.83653 1.86432 1.40977 1.88165 1.23387 1.23880 0.89916 1.03791 0.93863 1.20666 0.95236 0.96771 0.96619 1.21151 1.04559 0.93028 1.07321 0.90157 0.88587 0.88058 0.90556 0.89889 0.92746 0.89516 0.90030 0.89719 0.90948 0.91286 0.74766 0.88706 0.90269 0.86652 0.88620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.36 10.98 21.83 0.24 -42.12 16 2 C 0.04 1.84 5.13 85.26 0.44 2.28 16 3 Si 0.98 37.26 29.60 68.60 2.03 39.29 16 4 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 5 H -0.27 -9.74 7.11 99.48 0.71 -9.04 16 6 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 7 C -0.50 -26.21 9.05 23.46 0.21 -26.00 16 8 H 0.07 3.78 7.91 -2.91 -0.02 3.76 16 9 C 0.08 4.28 5.58 -21.29 -0.12 4.16 16 10 C -0.19 -9.62 8.70 22.73 0.20 -9.42 16 11 C -0.09 -3.84 8.15 22.22 0.18 -3.66 16 12 C -0.24 -9.04 3.98 -19.67 -0.08 -9.12 16 13 C 0.11 3.41 5.69 85.56 0.49 3.89 16 14 N -0.51 -15.60 5.54 -887.58 -4.91 -20.51 16 15 C 0.02 0.69 6.46 86.45 0.56 1.25 16 16 C -0.14 -3.85 6.06 31.48 0.19 -3.66 16 17 C 0.11 3.27 1.44 -9.59 -0.01 3.26 16 18 F -0.21 -6.71 16.95 44.97 0.76 -5.95 16 19 C 0.07 1.61 6.19 71.98 0.45 2.05 16 20 O -0.58 -13.48 13.37 -148.98 -1.99 -15.47 16 21 C 0.01 0.41 5.30 86.65 0.46 0.87 16 22 C -0.07 -2.94 7.45 22.22 0.17 -2.77 16 23 C -0.24 -11.10 9.80 22.73 0.22 -10.88 16 24 H 0.29 13.45 8.30 -92.71 -0.77 12.68 16 25 H 0.10 5.16 6.16 -2.91 -0.02 5.14 16 26 H 0.10 3.98 7.16 -2.91 -0.02 3.96 16 27 H 0.08 2.32 8.02 -2.39 -0.02 2.30 16 28 H 0.08 2.44 8.08 -2.38 -0.02 2.43 16 29 H 0.05 1.76 4.84 -2.39 -0.01 1.75 16 30 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.08 2.33 7.85 -2.39 -0.02 2.31 16 32 H 0.08 2.32 8.12 -2.39 -0.02 2.30 16 33 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.07 1.68 8.13 -2.39 -0.02 1.66 16 35 H 0.40 5.21 9.12 -74.06 -0.68 4.53 16 36 H 0.09 2.62 8.14 -2.38 -0.02 2.60 16 37 H 0.08 2.60 4.75 -2.39 -0.01 2.59 16 38 H 0.12 3.90 8.05 -2.91 -0.02 3.87 16 39 H 0.10 4.21 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -59.40 315.70 -0.14 -59.54 By element: Atomic # 1 Polarization: 32.59 SS G_CDS: 0.39 Total: 32.98 kcal Atomic # 6 Polarization: -51.10 SS G_CDS: 3.35 Total: -47.75 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: -4.67 Total: -62.64 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -1.99 Total: -15.47 kcal Atomic # 9 Polarization: -6.71 SS G_CDS: 0.76 Total: -5.95 kcal Atomic # 14 Polarization: 37.26 SS G_CDS: 2.03 Total: 39.29 kcal Total: -59.40 -0.14 -59.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338591408.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.337 kcal (2) G-P(sol) polarization free energy of solvation -59.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds