Wall clock time and date at job start Wed Apr 15 2020 11:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30913 * 1 3 3 Si 1.86796 * 120.00339 * 2 1 4 4 H 1.48503 * 109.47200 * 269.99981 * 3 2 1 5 5 H 1.48499 * 109.47225 * 29.99807 * 3 2 1 6 6 H 1.48500 * 109.47595 * 149.99750 * 3 2 1 7 7 C 1.39852 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00077 * 192.39208 * 7 2 1 9 9 C 1.41109 * 120.00018 * 12.39039 * 7 2 1 10 10 C 1.40907 * 120.15204 * 27.68478 * 9 7 2 11 11 C 1.36306 * 119.83883 * 180.02562 * 10 9 7 12 12 C 1.39609 * 120.15801 * 359.97438 * 11 10 9 13 13 N 1.38815 * 119.84376 * 179.97438 * 12 11 10 14 14 C 1.39594 * 119.99939 * 154.76706 * 13 12 11 15 15 C 1.38977 * 120.07532 * 328.06903 * 14 13 12 16 16 C 1.38089 * 119.91281 * 179.76956 * 15 14 13 17 17 C 1.38305 * 120.08334 * 0.48481 * 16 15 14 18 18 C 1.50697 * 119.92179 * 179.76530 * 17 16 15 19 19 C 1.53004 * 117.49717 * 8.77409 * 18 17 16 20 20 C 1.52994 * 117.50026 * 300.11381 * 18 17 16 21 21 C 1.38306 * 120.15597 * 359.79215 * 17 16 15 22 22 C 1.38078 * 120.08125 * 359.94993 * 21 17 16 23 23 C 1.39605 * 120.31106 * 0.26542 * 12 11 10 24 24 C 1.36312 * 120.15820 * 359.47551 * 23 12 11 25 25 H 0.97005 * 119.99628 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.07888 * 359.97438 * 10 9 7 27 27 H 1.07998 * 119.91838 * 179.97438 * 11 10 9 28 28 H 0.97004 * 119.99898 * 334.50123 * 13 12 11 29 29 H 1.07991 * 120.04285 * 0.02562 * 15 14 13 30 30 H 1.08002 * 119.95618 * 180.25173 * 16 15 14 31 31 H 1.09000 * 115.54971 * 154.43815 * 18 17 16 32 32 H 1.09003 * 117.49787 * 359.97438 * 19 18 17 33 33 H 1.08996 * 117.49988 * 145.01907 * 19 18 17 34 34 H 1.09009 * 117.49813 * 214.98089 * 20 18 17 35 35 H 1.09002 * 117.49837 * 359.97288 * 20 18 17 36 36 H 1.07997 * 119.95738 * 179.97438 * 21 17 16 37 37 H 1.08006 * 120.04101 * 180.02562 * 22 21 17 38 38 H 1.08001 * 119.91652 * 179.74159 * 23 12 11 39 39 H 1.07994 * 120.08150 * 180.26015 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2432 1.6176 0.0000 4 1 2.4907 2.0463 -1.4001 5 1 1.4407 2.6526 0.7000 6 1 3.5407 1.4401 0.7001 7 6 2.0084 -1.2112 0.0005 8 1 3.0695 -1.2220 0.2013 9 6 1.3275 -2.4191 -0.2611 10 6 0.1676 -2.4188 -1.0613 11 6 -0.4854 -3.5892 -1.3095 12 6 -0.0073 -4.7864 -0.7736 13 7 -0.6778 -5.9745 -1.0301 14 6 0.0092 -7.1886 -0.9793 15 6 1.3522 -7.2442 -1.3327 16 6 2.0298 -8.4461 -1.2767 17 6 1.3711 -9.5955 -0.8792 18 6 2.1127 -10.9062 -0.8244 19 6 3.6299 -10.8680 -1.0189 20 6 2.7297 -11.4236 -2.1253 21 6 0.0332 -9.5448 -0.5324 22 6 -0.6495 -8.3456 -0.5809 23 6 1.1383 -4.7934 0.0242 24 6 1.8044 -3.6312 0.2763 25 1 -0.4850 0.8401 -0.0004 26 1 -0.2035 -1.4932 -1.4762 27 1 -1.3747 -3.5904 -1.9223 28 1 -1.6246 -5.9614 -1.2409 29 1 1.8662 -6.3479 -1.6467 30 1 3.0745 -8.4894 -1.5472 31 1 1.7129 -11.6438 -0.1287 32 1 4.0915 -9.8949 -1.1868 33 1 4.2281 -11.5809 -0.4514 34 1 2.7361 -12.5019 -2.2853 35 1 2.5989 -10.8162 -3.0209 36 1 -0.4781 -10.4443 -0.2228 37 1 -1.6941 -8.3067 -0.3095 38 1 1.5001 -5.7226 0.4390 39 1 2.6929 -3.6386 0.8901 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201681833.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:37 Heat of formation + Delta-G solvation = 69.494998 kcal Electronic energy + Delta-G solvation = -20004.315425 eV Core-core repulsion = 17069.708054 eV Total energy + Delta-G solvation = -2934.607371 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.132 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.71097 -38.13564 -36.71566 -34.70141 -33.00890 -30.70288 -30.02775 -29.18535 -28.04229 -24.80529 -23.40504 -22.54908 -22.05026 -21.03131 -20.43725 -19.90900 -17.40318 -17.03593 -16.37931 -15.94227 -15.21141 -14.96100 -14.33721 -14.01577 -13.91416 -13.33591 -13.16471 -12.84448 -12.61759 -12.52619 -12.10062 -11.91123 -11.64005 -11.50257 -11.24242 -11.15067 -10.97269 -10.80447 -10.68523 -10.52109 -10.34975 -9.91883 -9.71206 -9.39280 -9.04513 -8.61780 -7.79833 -7.61962 -6.73242 -6.48847 -4.24702 1.67137 1.73550 2.78006 2.99991 3.07941 3.11260 3.19568 3.75783 3.94565 4.10544 4.25129 4.63495 4.65948 4.86947 4.99698 5.13320 5.27051 5.36545 5.53648 5.65617 5.68381 5.76821 5.88968 6.01514 6.05474 6.11513 6.16132 6.25799 6.33369 6.65865 6.73470 6.80232 6.93550 7.00029 7.05534 7.14450 7.27653 7.49412 7.55671 7.71628 8.00625 8.19561 8.33650 8.44737 8.62308 8.89511 8.96900 10.23138 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.033518 B = 0.003315 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.163789 B = 8443.943389 C = 9057.282491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.072 3.928 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.460 4.460 8 H 0.076 0.924 9 C 0.093 3.907 10 C -0.136 4.136 11 C -0.134 4.134 12 C 0.037 3.963 13 N -0.678 5.678 14 C 0.207 3.793 15 C -0.164 4.164 16 C -0.085 4.085 17 C -0.114 4.114 18 C -0.102 4.102 19 C -0.182 4.182 20 C -0.176 4.176 21 C -0.078 4.078 22 C -0.187 4.187 23 C -0.123 4.123 24 C -0.199 4.199 25 H 0.279 0.721 26 H 0.123 0.877 27 H 0.090 0.910 28 H 0.396 0.604 29 H 0.129 0.871 30 H 0.117 0.883 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.095 0.905 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.074 -14.771 -2.637 15.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.491 4.491 8 H 0.094 0.906 9 C 0.090 3.910 10 C -0.156 4.156 11 C -0.155 4.155 12 C -0.057 4.057 13 N -0.298 5.298 14 C 0.104 3.896 15 C -0.185 4.185 16 C -0.104 4.104 17 C -0.116 4.116 18 C -0.120 4.120 19 C -0.219 4.219 20 C -0.213 4.213 21 C -0.097 4.097 22 C -0.209 4.209 23 C -0.144 4.144 24 C -0.219 4.219 25 H 0.090 0.910 26 H 0.141 0.859 27 H 0.108 0.892 28 H 0.230 0.770 29 H 0.147 0.853 30 H 0.135 0.865 31 H 0.124 0.876 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.113 0.887 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.975 -14.486 -2.590 14.748 hybrid contribution -0.139 0.828 0.052 0.841 sum 0.836 -13.658 -2.539 13.917 Atomic orbital electron populations 1.69826 1.07382 1.28932 1.36957 1.25872 0.94823 1.01186 0.92503 0.86281 0.80363 0.80661 0.79196 1.19400 1.20384 1.18709 1.19487 0.96329 0.90699 1.42570 0.90576 1.17620 0.91854 0.92107 0.89377 1.20981 0.98071 0.96273 1.00227 1.20208 1.00687 0.92439 1.02123 1.17237 0.98528 0.84502 1.05447 1.41668 1.10572 1.02191 1.75388 1.17819 0.92245 0.85841 0.93657 1.21045 0.94641 0.98503 1.04358 1.20770 0.99137 0.91692 0.98764 1.18816 0.93904 0.93051 1.05835 1.20887 0.94304 0.96640 1.00171 1.23065 0.92860 1.02995 1.02953 1.23025 1.04453 1.00676 0.93180 1.20549 0.93411 0.96788 0.98914 1.20726 1.00514 0.92576 1.07133 1.20176 0.96996 0.97485 0.99727 1.20643 1.02667 0.92896 1.05671 0.91040 0.85910 0.89209 0.77005 0.85344 0.86517 0.87630 0.88351 0.88857 0.88978 0.88717 0.86711 0.86545 0.88692 0.88700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.69 10.84 55.54 0.60 -20.09 16 2 C 0.07 1.80 5.22 -17.34 -0.09 1.71 16 3 Si 0.91 18.68 29.58 -169.99 -5.03 13.65 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.46 -12.11 9.04 -37.89 -0.34 -12.45 16 8 H 0.08 1.93 7.87 -52.49 -0.41 1.52 16 9 C 0.09 2.44 5.56 -106.79 -0.59 1.85 16 10 C -0.14 -3.44 8.61 -39.27 -0.34 -3.78 16 11 C -0.13 -3.04 9.87 -39.77 -0.39 -3.43 16 12 C 0.04 0.80 6.06 -83.68 -0.51 0.29 16 13 N -0.68 -12.21 5.42 -8.30 -0.05 -12.25 16 14 C 0.21 3.49 5.89 -83.78 -0.49 3.00 16 15 C -0.16 -2.77 7.72 -39.36 -0.30 -3.07 16 16 C -0.09 -1.24 9.29 -39.61 -0.37 -1.61 16 17 C -0.11 -1.53 5.61 -104.57 -0.59 -2.12 16 18 C -0.10 -1.11 6.04 -91.77 -0.55 -1.66 16 19 C -0.18 -1.78 9.86 -26.69 -0.26 -2.04 16 20 C -0.18 -1.69 10.16 -26.70 -0.27 -1.96 16 21 C -0.08 -1.04 9.73 -39.61 -0.39 -1.42 16 22 C -0.19 -2.74 9.96 -39.37 -0.39 -3.13 16 23 C -0.12 -2.76 7.79 -39.77 -0.31 -3.07 16 24 C -0.20 -4.82 9.74 -39.27 -0.38 -5.21 16 25 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 26 H 0.12 3.23 6.18 -52.48 -0.32 2.90 16 27 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 28 H 0.40 6.24 8.88 -40.82 -0.36 5.88 16 29 H 0.13 2.37 6.58 -52.49 -0.35 2.03 16 30 H 0.12 1.51 6.01 -52.49 -0.32 1.19 16 31 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.10 0.99 6.17 -51.93 -0.32 0.67 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 0.74 8.14 -51.92 -0.42 0.31 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.11 1.25 8.06 -52.49 -0.42 0.82 16 37 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 38 H 0.10 2.01 6.30 -52.49 -0.33 1.68 16 39 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 324.41 15.07 4.89 4.89 Total: -1.00 -27.07 324.41 -11.09 -38.15 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -4.93 Total: 13.76 kcal Atomic # 6 Polarization: -31.54 SS G_CDS: -6.58 Total: -38.11 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: 0.56 Total: -32.34 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.07 -11.09 -38.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201681833.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.650 kcal (2) G-P(sol) polarization free energy of solvation -27.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds