Wall clock time and date at job start Wed Apr 15 2020 11:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30913 * 1 3 3 Si 1.86796 * 120.00339 * 2 1 4 4 H 1.48503 * 109.47200 * 269.99981 * 3 2 1 5 5 H 1.48499 * 109.47225 * 29.99807 * 3 2 1 6 6 H 1.48500 * 109.47595 * 149.99750 * 3 2 1 7 7 C 1.39852 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00077 * 192.39208 * 7 2 1 9 9 C 1.41109 * 120.00018 * 12.39039 * 7 2 1 10 10 C 1.40907 * 120.15204 * 27.68478 * 9 7 2 11 11 C 1.36306 * 119.83883 * 180.02562 * 10 9 7 12 12 C 1.39609 * 120.15801 * 359.97438 * 11 10 9 13 13 N 1.38815 * 119.84376 * 179.97438 * 12 11 10 14 14 C 1.39594 * 119.99939 * 154.76706 * 13 12 11 15 15 C 1.38977 * 120.07532 * 328.06903 * 14 13 12 16 16 C 1.38089 * 119.91281 * 179.76956 * 15 14 13 17 17 C 1.38305 * 120.08334 * 0.48481 * 16 15 14 18 18 C 1.50697 * 119.92179 * 179.76530 * 17 16 15 19 19 C 1.53004 * 117.49717 * 8.77409 * 18 17 16 20 20 C 1.52994 * 117.50026 * 300.11381 * 18 17 16 21 21 C 1.38306 * 120.15597 * 359.79215 * 17 16 15 22 22 C 1.38078 * 120.08125 * 359.94993 * 21 17 16 23 23 C 1.39605 * 120.31106 * 0.26542 * 12 11 10 24 24 C 1.36312 * 120.15820 * 359.47551 * 23 12 11 25 25 H 0.97005 * 119.99628 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.07888 * 359.97438 * 10 9 7 27 27 H 1.07998 * 119.91838 * 179.97438 * 11 10 9 28 28 H 0.97004 * 119.99898 * 334.50123 * 13 12 11 29 29 H 1.07991 * 120.04285 * 0.02562 * 15 14 13 30 30 H 1.08002 * 119.95618 * 180.25173 * 16 15 14 31 31 H 1.09000 * 115.54971 * 154.43815 * 18 17 16 32 32 H 1.09003 * 117.49787 * 359.97438 * 19 18 17 33 33 H 1.08996 * 117.49988 * 145.01907 * 19 18 17 34 34 H 1.09009 * 117.49813 * 214.98089 * 20 18 17 35 35 H 1.09002 * 117.49837 * 359.97288 * 20 18 17 36 36 H 1.07997 * 119.95738 * 179.97438 * 21 17 16 37 37 H 1.08006 * 120.04101 * 180.02562 * 22 21 17 38 38 H 1.08001 * 119.91652 * 179.74159 * 23 12 11 39 39 H 1.07994 * 120.08150 * 180.26015 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2432 1.6176 0.0000 4 1 2.4907 2.0463 -1.4001 5 1 1.4407 2.6526 0.7000 6 1 3.5407 1.4401 0.7001 7 6 2.0084 -1.2112 0.0005 8 1 3.0695 -1.2220 0.2013 9 6 1.3275 -2.4191 -0.2611 10 6 0.1676 -2.4188 -1.0613 11 6 -0.4854 -3.5892 -1.3095 12 6 -0.0073 -4.7864 -0.7736 13 7 -0.6778 -5.9745 -1.0301 14 6 0.0092 -7.1886 -0.9793 15 6 1.3522 -7.2442 -1.3327 16 6 2.0298 -8.4461 -1.2767 17 6 1.3711 -9.5955 -0.8792 18 6 2.1127 -10.9062 -0.8244 19 6 3.6299 -10.8680 -1.0189 20 6 2.7297 -11.4236 -2.1253 21 6 0.0332 -9.5448 -0.5324 22 6 -0.6495 -8.3456 -0.5809 23 6 1.1383 -4.7934 0.0242 24 6 1.8044 -3.6312 0.2763 25 1 -0.4850 0.8401 -0.0004 26 1 -0.2035 -1.4932 -1.4762 27 1 -1.3747 -3.5904 -1.9223 28 1 -1.6246 -5.9614 -1.2409 29 1 1.8662 -6.3479 -1.6467 30 1 3.0745 -8.4894 -1.5472 31 1 1.7129 -11.6438 -0.1287 32 1 4.0915 -9.8949 -1.1868 33 1 4.2281 -11.5809 -0.4514 34 1 2.7361 -12.5019 -2.2853 35 1 2.5989 -10.8162 -3.0209 36 1 -0.4781 -10.4443 -0.2228 37 1 -1.6941 -8.3067 -0.3095 38 1 1.5001 -5.7226 0.4390 39 1 2.6929 -3.6386 0.8901 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201681833.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:36 Heat of formation + Delta-G solvation = 58.547749 kcal Electronic energy + Delta-G solvation = -20004.790134 eV Core-core repulsion = 17069.708054 eV Total energy + Delta-G solvation = -2935.082080 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.132 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.98164 -39.62086 -37.94085 -36.18354 -34.70612 -31.97082 -31.67095 -30.88589 -29.52158 -26.54376 -24.58077 -23.64546 -23.08714 -22.70169 -22.05643 -21.03918 -19.24372 -18.34744 -17.94766 -17.14870 -16.82599 -16.05494 -15.72191 -15.47176 -15.25706 -14.79320 -14.51640 -14.32628 -14.07794 -13.90718 -13.63984 -13.53750 -13.24595 -12.81983 -12.69402 -12.44804 -12.33241 -12.13227 -11.93665 -11.82935 -11.62581 -11.39327 -11.16607 -11.12482 -10.64114 -9.79549 -9.49840 -9.30294 -8.57472 -8.08102 -6.16829 0.43464 0.55625 1.04789 1.12554 1.39529 1.51921 1.54408 2.23746 2.66048 2.72729 2.85302 3.26902 3.74020 3.77795 4.00672 4.09838 4.15500 4.24428 4.35960 4.38348 4.43631 4.55175 4.74224 4.82471 4.85011 4.99144 5.01754 5.10091 5.17690 5.22598 5.24225 5.32348 5.34804 5.48998 5.56343 5.66995 5.72567 5.82012 5.87033 6.08806 6.12038 6.32315 6.59644 6.77449 6.98139 6.99152 7.12523 8.40944 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.033518 B = 0.003315 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.163789 B = 8443.943389 C = 9057.282491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.031 3.969 3 Si 0.983 3.017 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.260 1.260 7 C -0.499 4.499 8 H 0.072 0.928 9 C 0.058 3.942 10 C -0.153 4.153 11 C -0.143 4.143 12 C 0.063 3.937 13 N -0.678 5.678 14 C 0.178 3.822 15 C -0.181 4.181 16 C -0.093 4.093 17 C -0.105 4.105 18 C -0.116 4.116 19 C -0.182 4.182 20 C -0.168 4.168 21 C -0.079 4.079 22 C -0.179 4.179 23 C -0.128 4.128 24 C -0.209 4.209 25 H 0.285 0.715 26 H 0.107 0.893 27 H 0.113 0.887 28 H 0.407 0.593 29 H 0.104 0.896 30 H 0.128 0.872 31 H 0.124 0.876 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.086 0.914 36 H 0.147 0.853 37 H 0.136 0.864 38 H 0.107 0.893 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.950 -17.415 -2.553 17.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.182 4.182 3 Si 0.804 3.196 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.184 1.184 7 C -0.530 4.530 8 H 0.090 0.910 9 C 0.056 3.944 10 C -0.173 4.173 11 C -0.164 4.164 12 C -0.033 4.033 13 N -0.301 5.301 14 C 0.078 3.922 15 C -0.202 4.202 16 C -0.111 4.111 17 C -0.106 4.106 18 C -0.134 4.134 19 C -0.219 4.219 20 C -0.205 4.205 21 C -0.097 4.097 22 C -0.201 4.201 23 C -0.149 4.149 24 C -0.229 4.229 25 H 0.096 0.904 26 H 0.125 0.875 27 H 0.131 0.869 28 H 0.243 0.757 29 H 0.122 0.878 30 H 0.146 0.854 31 H 0.142 0.858 32 H 0.108 0.892 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.104 0.896 36 H 0.165 0.835 37 H 0.154 0.846 38 H 0.125 0.875 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.844 -17.197 -2.515 17.401 hybrid contribution -0.115 1.283 -0.009 1.288 sum 0.729 -15.914 -2.524 16.130 Atomic orbital electron populations 1.69886 1.08705 1.30094 1.37827 1.26685 0.95620 1.04279 0.91584 0.85192 0.78917 0.76117 0.79380 1.18766 1.19405 1.18432 1.19694 0.96400 0.91942 1.44945 0.90997 1.17912 0.92895 0.92951 0.90660 1.20933 0.98646 0.96681 1.01001 1.20408 1.01409 0.92097 1.02461 1.17285 0.97454 0.85585 1.02946 1.41525 1.11064 1.01460 1.76088 1.18013 0.92457 0.86070 0.95624 1.20988 0.95028 0.98585 1.05633 1.20945 0.99838 0.91444 0.98880 1.19199 0.94260 0.93762 1.03427 1.20994 0.94873 0.95747 1.01759 1.23152 0.92349 1.03182 1.03191 1.23081 1.03330 1.01782 0.92260 1.20957 0.93409 0.97450 0.97908 1.20997 1.01456 0.92026 1.05636 1.20280 0.97368 0.97269 0.99965 1.20797 1.03055 0.93180 1.05831 0.90449 0.87501 0.86930 0.75657 0.87829 0.85397 0.85784 0.89152 0.87101 0.86892 0.89580 0.83484 0.84584 0.87500 0.88395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.59 10.84 21.81 0.24 -44.35 16 2 C 0.03 1.59 5.22 85.22 0.45 2.04 16 3 Si 0.98 39.16 29.58 68.60 2.03 41.19 16 4 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 5 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 6 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 7 C -0.50 -27.51 9.04 23.37 0.21 -27.29 16 8 H 0.07 3.84 7.87 -2.91 -0.02 3.81 16 9 C 0.06 3.21 5.56 -21.27 -0.12 3.09 16 10 C -0.15 -8.08 8.61 22.47 0.19 -7.89 16 11 C -0.14 -6.60 9.87 22.15 0.22 -6.38 16 12 C 0.06 2.73 6.06 38.70 0.23 2.97 16 13 N -0.68 -23.84 5.42 -180.19 -0.98 -24.82 16 14 C 0.18 5.81 5.89 38.26 0.23 6.03 16 15 C -0.18 -6.05 7.72 22.41 0.17 -5.88 16 16 C -0.09 -2.58 9.29 22.25 0.21 -2.38 16 17 C -0.10 -2.52 5.61 -19.83 -0.11 -2.63 16 18 C -0.12 -2.11 6.04 -11.54 -0.07 -2.18 16 19 C -0.18 -3.01 9.86 30.62 0.30 -2.71 16 20 C -0.17 -2.66 10.16 30.62 0.31 -2.35 16 21 C -0.08 -1.82 9.73 22.25 0.22 -1.60 16 22 C -0.18 -4.76 9.96 22.41 0.22 -4.54 16 23 C -0.13 -5.84 7.79 22.15 0.17 -5.66 16 24 C -0.21 -10.53 9.74 22.47 0.22 -10.31 16 25 H 0.29 13.76 8.30 -92.70 -0.77 12.99 16 26 H 0.11 5.92 6.18 -2.91 -0.02 5.90 16 27 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 28 H 0.41 12.27 8.88 -92.71 -0.82 11.44 16 29 H 0.10 3.94 6.58 -2.92 -0.02 3.92 16 30 H 0.13 3.19 6.01 -2.91 -0.02 3.17 16 31 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.09 1.64 6.17 -2.39 -0.01 1.63 16 33 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 37 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 38 H 0.11 4.56 6.30 -2.91 -0.02 4.54 16 39 H 0.10 4.71 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -60.38 324.41 4.59 -55.79 By element: Atomic # 1 Polarization: 39.61 SS G_CDS: 0.25 Total: 39.86 kcal Atomic # 6 Polarization: -70.72 SS G_CDS: 3.05 Total: -67.67 kcal Atomic # 7 Polarization: -68.43 SS G_CDS: -0.74 Total: -69.17 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.19 kcal Total: -60.38 4.59 -55.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201681833.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.342 kcal (2) G-P(sol) polarization free energy of solvation -60.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds