Wall clock time and date at job start Wed Apr 15 2020 11:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86799 * 119.99725 * 2 1 4 4 H 1.48505 * 109.47074 * 270.47544 * 3 2 1 5 5 H 1.48497 * 109.47460 * 30.47680 * 3 2 1 6 6 H 1.48496 * 109.47122 * 150.47777 * 3 2 1 7 7 C 1.39911 * 120.00199 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00312 * 345.62918 * 7 2 1 9 9 C 1.41011 * 119.99684 * 165.62044 * 7 2 1 10 10 C 1.40740 * 120.31600 * 327.79472 * 9 7 2 11 11 C 1.36425 * 119.95592 * 180.02562 * 10 9 7 12 12 C 1.38931 * 120.60554 * 359.74481 * 11 10 9 13 13 C 1.38116 * 120.63345 * 0.51057 * 12 11 10 14 14 C 1.38809 * 120.02282 * 359.49573 * 13 12 11 15 15 N 1.38679 * 120.29997 * 180.23164 * 14 13 12 16 16 C 1.39590 * 119.99786 * 256.41239 * 15 14 13 17 17 C 1.38971 * 120.08144 * 5.02555 * 16 15 14 18 18 C 1.38086 * 119.91960 * 179.76452 * 17 16 15 19 19 C 1.38296 * 120.08178 * 0.51607 * 18 17 16 20 20 C 1.50700 * 119.92491 * 179.76082 * 19 18 17 21 21 C 1.53010 * 117.49461 * 8.72718 * 20 19 18 22 22 C 1.53001 * 117.50060 * 300.06947 * 20 19 18 23 23 C 1.38306 * 120.15802 * 359.74029 * 19 18 17 24 24 C 1.38079 * 120.08320 * 0.02562 * 23 19 18 25 25 H 0.97000 * 120.00423 * 0.02562 * 1 2 3 26 26 H 1.08005 * 120.01816 * 359.97438 * 10 9 7 27 27 H 1.07997 * 119.69651 * 179.97438 * 11 10 9 28 28 H 1.07998 * 119.68436 * 180.25994 * 12 11 10 29 29 H 1.07994 * 119.98985 * 179.76320 * 13 12 11 30 30 H 0.97000 * 120.00234 * 76.41458 * 15 14 13 31 31 H 1.08007 * 120.04069 * 0.02562 * 17 16 15 32 32 H 1.08005 * 119.95822 * 180.27508 * 18 17 16 33 33 H 1.08993 * 115.55505 * 154.38967 * 20 19 18 34 34 H 1.09001 * 117.49960 * 359.97438 * 21 20 19 35 35 H 1.08991 * 117.49888 * 145.02178 * 21 20 19 36 36 H 1.08997 * 117.49959 * 214.97706 * 22 20 19 37 37 H 1.09003 * 117.49794 * 359.97438 * 22 20 19 38 38 H 1.08008 * 119.95745 * 180.02562 * 23 19 18 39 39 H 1.07998 * 120.03971 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4801 2.0523 -1.4001 5 1 1.4453 2.6498 0.7101 6 1 3.5453 1.4374 0.6899 7 6 2.0084 -1.2116 0.0005 8 1 1.4938 -2.1322 0.2331 9 6 3.3854 -1.2308 -0.3027 10 6 3.9258 -0.3012 -1.2108 11 6 5.2590 -0.3267 -1.4993 12 6 6.0946 -1.2609 -0.9001 13 6 5.5896 -2.1879 -0.0094 14 6 4.2371 -2.1857 0.3031 15 7 3.7248 -3.1107 1.2003 16 6 3.0020 -4.2098 0.7332 17 6 2.8834 -4.4358 -0.6329 18 6 2.1717 -5.5268 -1.0912 19 6 1.5684 -6.3880 -0.1929 20 6 0.7881 -7.5746 -0.6971 21 6 0.8687 -7.8894 -2.1923 22 6 -0.4136 -7.2968 -1.6025 23 6 1.6799 -6.1632 1.1672 24 6 2.3940 -5.0771 1.6330 25 1 -0.4851 0.8400 -0.0004 26 1 3.2853 0.4313 -1.6796 27 1 5.6691 0.3883 -2.1970 28 1 7.1485 -1.2650 -1.1361 29 1 6.2479 -2.9119 0.4474 30 1 3.8687 -2.9940 2.1525 31 1 3.3508 -3.7614 -1.3351 32 1 2.0829 -5.7056 -2.1526 33 1 0.7156 -8.4165 -0.0088 34 1 1.4858 -7.2381 -2.8112 35 1 0.8488 -8.9384 -2.4874 36 1 -1.2765 -7.9562 -1.5100 37 1 -0.6400 -6.2558 -1.8332 38 1 1.2078 -6.8381 1.8659 39 1 2.4809 -4.9024 2.6952 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201683329.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:40 Heat of formation + Delta-G solvation = 71.589924 kcal Electronic energy + Delta-G solvation = -20826.515790 eV Core-core repulsion = 17891.999262 eV Total energy + Delta-G solvation = -2934.516528 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.132 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.41088 -38.17248 -36.52542 -34.07632 -33.66021 -30.50920 -30.27157 -29.57936 -27.43833 -25.01818 -23.01706 -22.45903 -21.98302 -21.35895 -20.19520 -19.62017 -17.45292 -17.01991 -16.53819 -15.58710 -15.25928 -14.67854 -14.24695 -14.09346 -13.96081 -13.49872 -13.10178 -12.87647 -12.59710 -12.42495 -12.30229 -11.99605 -11.66892 -11.36779 -11.04100 -10.93983 -10.83445 -10.77845 -10.45428 -10.31415 -10.08468 -9.94738 -9.77058 -9.36706 -8.96262 -8.29209 -7.78490 -7.64143 -6.98283 -6.55525 -4.52741 2.07865 2.14815 2.45527 2.58274 3.06181 3.15832 3.25646 3.91798 4.03122 4.35173 4.45768 4.60617 4.90989 5.12083 5.26718 5.27469 5.41208 5.56050 5.64526 5.77690 5.93214 5.96987 6.00644 6.02002 6.20445 6.24123 6.29738 6.39662 6.46496 6.56998 6.63116 6.79041 6.99941 7.06484 7.10042 7.17134 7.27824 7.45722 7.57161 7.60448 7.78259 7.97545 8.26740 8.39680 8.45599 8.73744 8.82948 10.03370 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.017549 B = 0.005568 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.191555 B = 5027.169553 C = 5708.442931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.081 3.919 3 Si 0.913 3.087 4 H -0.269 1.269 5 H -0.292 1.292 6 H -0.247 1.247 7 C -0.428 4.428 8 H 0.097 0.903 9 C 0.092 3.908 10 C -0.232 4.232 11 C -0.076 4.076 12 C -0.242 4.242 13 C -0.076 4.076 14 C 0.020 3.980 15 N -0.666 5.666 16 C 0.236 3.764 17 C -0.170 4.170 18 C -0.075 4.075 19 C -0.130 4.130 20 C -0.096 4.096 21 C -0.184 4.184 22 C -0.178 4.178 23 C -0.070 4.070 24 C -0.205 4.205 25 H 0.285 0.715 26 H 0.103 0.897 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.393 0.607 31 H 0.123 0.877 32 H 0.112 0.888 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.637 -8.386 -0.066 8.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.138 4.138 3 Si 0.740 3.260 4 H -0.195 1.195 5 H -0.220 1.220 6 H -0.170 1.170 7 C -0.456 4.456 8 H 0.115 0.885 9 C 0.088 3.912 10 C -0.252 4.252 11 C -0.094 4.094 12 C -0.262 4.262 13 C -0.096 4.096 14 C -0.074 4.074 15 N -0.287 5.287 16 C 0.132 3.868 17 C -0.192 4.192 18 C -0.093 4.093 19 C -0.133 4.133 20 C -0.114 4.114 21 C -0.221 4.221 22 C -0.215 4.215 23 C -0.089 4.089 24 C -0.227 4.227 25 H 0.096 0.904 26 H 0.121 0.879 27 H 0.112 0.888 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.228 0.772 31 H 0.140 0.860 32 H 0.130 0.870 33 H 0.121 0.879 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.115 0.885 38 H 0.129 0.871 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.404 -8.166 -0.171 8.514 hybrid contribution 0.182 0.963 0.301 1.026 sum 2.586 -7.202 0.130 7.653 Atomic orbital electron populations 1.69704 1.08029 1.30226 1.34798 1.26206 0.94774 1.01660 0.91140 0.86319 0.80735 0.79757 0.79151 1.19540 1.21975 1.17010 1.19424 0.91681 0.95869 1.38586 0.88529 1.17965 0.93397 0.90117 0.89759 1.20816 0.95369 1.04891 1.04111 1.20405 0.93831 0.97205 0.97965 1.20234 0.98022 1.01907 1.06055 1.20900 0.94464 0.97365 0.96883 1.17317 0.90875 0.97893 1.01269 1.41187 1.57774 1.22534 1.07225 1.17928 0.89785 0.86317 0.92762 1.20676 1.04887 0.99583 0.94101 1.20670 0.96259 0.93800 0.98604 1.18682 1.03738 0.97620 0.93223 1.20834 1.00155 0.97893 0.92541 1.23035 1.01441 1.01280 0.96354 1.23036 0.91747 1.02230 1.04461 1.20444 0.97527 0.96594 0.94323 1.20444 1.05500 0.98493 0.98302 0.90427 0.87897 0.88844 0.88714 0.88611 0.77196 0.85950 0.86969 0.87934 0.88503 0.89148 0.89165 0.88536 0.87100 0.86891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.28 13.93 55.55 0.77 -20.51 16 2 C 0.08 2.10 5.44 -17.33 -0.09 2.00 16 3 Si 0.91 20.53 24.50 -169.99 -4.16 16.36 16 4 H -0.27 -5.87 6.54 56.52 0.37 -5.50 16 5 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.25 -5.67 6.94 56.52 0.39 -5.28 16 7 C -0.43 -11.22 9.05 -37.91 -0.34 -11.57 16 8 H 0.10 2.75 6.76 -52.49 -0.35 2.40 16 9 C 0.09 2.24 4.67 -106.63 -0.50 1.74 16 10 C -0.23 -5.41 7.11 -39.29 -0.28 -5.69 16 11 C -0.08 -1.58 9.96 -39.98 -0.40 -1.98 16 12 C -0.24 -4.83 10.03 -39.37 -0.40 -5.23 16 13 C -0.08 -1.55 9.96 -39.41 -0.39 -1.94 16 14 C 0.02 0.44 4.54 -83.28 -0.38 0.06 16 15 N -0.67 -13.30 4.87 -8.04 -0.04 -13.34 16 16 C 0.24 4.67 5.47 -83.78 -0.46 4.21 16 17 C -0.17 -3.44 9.02 -39.37 -0.35 -3.80 16 18 C -0.07 -1.34 9.29 -39.62 -0.37 -1.70 16 19 C -0.13 -2.15 5.61 -104.58 -0.59 -2.74 16 20 C -0.10 -1.30 6.04 -91.77 -0.55 -1.86 16 21 C -0.18 -2.23 9.86 -26.69 -0.26 -2.49 16 22 C -0.18 -2.27 10.17 -26.69 -0.27 -2.54 16 23 C -0.07 -1.15 9.73 -39.61 -0.39 -1.53 16 24 C -0.20 -3.60 9.90 -39.36 -0.39 -3.99 16 25 H 0.29 6.87 8.30 -40.82 -0.34 6.53 16 26 H 0.10 2.41 4.64 -52.48 -0.24 2.17 16 27 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 28 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 29 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 30 H 0.39 6.99 8.84 -40.82 -0.36 6.63 16 31 H 0.12 2.69 6.78 -52.48 -0.36 2.33 16 32 H 0.11 1.81 6.01 -52.48 -0.32 1.50 16 33 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.10 1.21 6.17 -51.93 -0.32 0.88 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 39 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 320.09 15.07 4.82 4.82 Total: -1.00 -26.97 320.09 -9.95 -36.92 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -4.93 Total: 14.75 kcal Atomic # 6 Polarization: -32.60 SS G_CDS: -6.41 Total: -39.01 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: 0.73 Total: -33.84 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.16 Total: 16.36 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -26.97 -9.95 -36.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201683329.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.510 kcal (2) G-P(sol) polarization free energy of solvation -26.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds