Wall clock time and date at job start Wed Apr 15 2020 11:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86799 * 119.99725 * 2 1 4 4 H 1.48505 * 109.47074 * 270.47544 * 3 2 1 5 5 H 1.48497 * 109.47460 * 30.47680 * 3 2 1 6 6 H 1.48496 * 109.47122 * 150.47777 * 3 2 1 7 7 C 1.39911 * 120.00199 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00312 * 345.62918 * 7 2 1 9 9 C 1.41011 * 119.99684 * 165.62044 * 7 2 1 10 10 C 1.40740 * 120.31600 * 327.79472 * 9 7 2 11 11 C 1.36425 * 119.95592 * 180.02562 * 10 9 7 12 12 C 1.38931 * 120.60554 * 359.74481 * 11 10 9 13 13 C 1.38116 * 120.63345 * 0.51057 * 12 11 10 14 14 C 1.38809 * 120.02282 * 359.49573 * 13 12 11 15 15 N 1.38679 * 120.29997 * 180.23164 * 14 13 12 16 16 C 1.39590 * 119.99786 * 256.41239 * 15 14 13 17 17 C 1.38971 * 120.08144 * 5.02555 * 16 15 14 18 18 C 1.38086 * 119.91960 * 179.76452 * 17 16 15 19 19 C 1.38296 * 120.08178 * 0.51607 * 18 17 16 20 20 C 1.50700 * 119.92491 * 179.76082 * 19 18 17 21 21 C 1.53010 * 117.49461 * 8.72718 * 20 19 18 22 22 C 1.53001 * 117.50060 * 300.06947 * 20 19 18 23 23 C 1.38306 * 120.15802 * 359.74029 * 19 18 17 24 24 C 1.38079 * 120.08320 * 0.02562 * 23 19 18 25 25 H 0.97000 * 120.00423 * 0.02562 * 1 2 3 26 26 H 1.08005 * 120.01816 * 359.97438 * 10 9 7 27 27 H 1.07997 * 119.69651 * 179.97438 * 11 10 9 28 28 H 1.07998 * 119.68436 * 180.25994 * 12 11 10 29 29 H 1.07994 * 119.98985 * 179.76320 * 13 12 11 30 30 H 0.97000 * 120.00234 * 76.41458 * 15 14 13 31 31 H 1.08007 * 120.04069 * 0.02562 * 17 16 15 32 32 H 1.08005 * 119.95822 * 180.27508 * 18 17 16 33 33 H 1.08993 * 115.55505 * 154.38967 * 20 19 18 34 34 H 1.09001 * 117.49960 * 359.97438 * 21 20 19 35 35 H 1.08991 * 117.49888 * 145.02178 * 21 20 19 36 36 H 1.08997 * 117.49959 * 214.97706 * 22 20 19 37 37 H 1.09003 * 117.49794 * 359.97438 * 22 20 19 38 38 H 1.08008 * 119.95745 * 180.02562 * 23 19 18 39 39 H 1.07998 * 120.03971 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4801 2.0523 -1.4001 5 1 1.4453 2.6498 0.7101 6 1 3.5453 1.4374 0.6899 7 6 2.0084 -1.2116 0.0005 8 1 1.4938 -2.1322 0.2331 9 6 3.3854 -1.2308 -0.3027 10 6 3.9258 -0.3012 -1.2108 11 6 5.2590 -0.3267 -1.4993 12 6 6.0946 -1.2609 -0.9001 13 6 5.5896 -2.1879 -0.0094 14 6 4.2371 -2.1857 0.3031 15 7 3.7248 -3.1107 1.2003 16 6 3.0020 -4.2098 0.7332 17 6 2.8834 -4.4358 -0.6329 18 6 2.1717 -5.5268 -1.0912 19 6 1.5684 -6.3880 -0.1929 20 6 0.7881 -7.5746 -0.6971 21 6 0.8687 -7.8894 -2.1923 22 6 -0.4136 -7.2968 -1.6025 23 6 1.6799 -6.1632 1.1672 24 6 2.3940 -5.0771 1.6330 25 1 -0.4851 0.8400 -0.0004 26 1 3.2853 0.4313 -1.6796 27 1 5.6691 0.3883 -2.1970 28 1 7.1485 -1.2650 -1.1361 29 1 6.2479 -2.9119 0.4474 30 1 3.8687 -2.9940 2.1525 31 1 3.3508 -3.7614 -1.3351 32 1 2.0829 -5.7056 -2.1526 33 1 0.7156 -8.4165 -0.0088 34 1 1.4858 -7.2381 -2.8112 35 1 0.8488 -8.9384 -2.4874 36 1 -1.2765 -7.9562 -1.5100 37 1 -0.6400 -6.2558 -1.8332 38 1 1.2078 -6.8381 1.8659 39 1 2.4809 -4.9024 2.6952 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201683329.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:39 Heat of formation + Delta-G solvation = 59.191518 kcal Electronic energy + Delta-G solvation = -20827.053426 eV Core-core repulsion = 17891.999262 eV Total energy + Delta-G solvation = -2935.054164 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.132 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.87648 -39.69130 -37.81210 -35.57002 -35.48217 -32.29080 -31.71240 -31.10555 -28.98358 -26.80755 -24.32111 -23.87121 -23.21716 -22.94904 -21.71703 -20.98158 -19.31284 -18.45258 -18.17416 -16.97771 -16.80279 -16.07545 -15.89403 -15.68138 -15.38735 -15.02181 -14.66088 -14.40827 -14.17258 -13.86307 -13.79824 -13.56424 -13.36760 -12.71900 -12.66135 -12.38845 -12.26417 -12.07981 -12.03890 -11.79100 -11.62280 -11.47109 -11.14091 -11.07866 -10.43252 -9.71868 -9.50745 -9.37858 -8.86998 -8.04807 -6.45516 0.62946 0.66065 0.80539 0.86380 1.24233 1.37566 1.45785 2.09300 2.62045 2.81355 2.91075 3.32457 3.46218 3.83047 4.05363 4.12469 4.22252 4.26020 4.30886 4.40053 4.44350 4.59585 4.69532 4.81320 4.83225 4.87964 4.94386 5.02072 5.09468 5.22780 5.24726 5.31458 5.32860 5.41842 5.62454 5.65330 5.75976 5.86897 5.90151 6.00886 6.14339 6.25501 6.37912 6.62546 6.79124 6.93226 7.20309 8.20953 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.017549 B = 0.005568 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.191555 B = 5027.169553 C = 5708.442931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.043 3.957 3 Si 0.967 3.033 4 H -0.259 1.259 5 H -0.283 1.283 6 H -0.254 1.254 7 C -0.455 4.455 8 H 0.058 0.942 9 C 0.072 3.928 10 C -0.248 4.248 11 C -0.083 4.083 12 C -0.220 4.220 13 C -0.085 4.085 14 C 0.027 3.973 15 N -0.672 5.672 16 C 0.214 3.786 17 C -0.195 4.195 18 C -0.085 4.085 19 C -0.128 4.128 20 C -0.108 4.108 21 C -0.174 4.174 22 C -0.179 4.179 23 C -0.072 4.072 24 C -0.208 4.208 25 H 0.290 0.710 26 H 0.097 0.903 27 H 0.127 0.873 28 H 0.133 0.867 29 H 0.121 0.879 30 H 0.401 0.599 31 H 0.094 0.906 32 H 0.122 0.878 33 H 0.127 0.873 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.073 0.927 38 H 0.144 0.856 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.460 -9.714 -0.065 10.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.171 4.171 3 Si 0.791 3.209 4 H -0.185 1.185 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.485 4.485 8 H 0.076 0.924 9 C 0.068 3.932 10 C -0.267 4.267 11 C -0.101 4.101 12 C -0.240 4.240 13 C -0.105 4.105 14 C -0.068 4.068 15 N -0.295 5.295 16 C 0.111 3.889 17 C -0.217 4.217 18 C -0.104 4.104 19 C -0.130 4.130 20 C -0.126 4.126 21 C -0.211 4.211 22 C -0.216 4.216 23 C -0.090 4.090 24 C -0.230 4.230 25 H 0.101 0.899 26 H 0.115 0.885 27 H 0.145 0.855 28 H 0.150 0.850 29 H 0.139 0.861 30 H 0.237 0.763 31 H 0.113 0.887 32 H 0.140 0.860 33 H 0.145 0.855 34 H 0.106 0.894 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.091 0.909 38 H 0.162 0.838 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.234 -9.510 -0.173 10.411 hybrid contribution -0.195 1.179 0.254 1.222 sum 4.038 -8.331 0.081 9.259 Atomic orbital electron populations 1.69752 1.09133 1.31075 1.38088 1.26837 0.95328 1.04093 0.90817 0.85498 0.79152 0.76720 0.79497 1.18463 1.21023 1.17776 1.19236 0.92847 0.94844 1.41545 0.92424 1.18162 0.93019 0.91476 0.90542 1.20947 0.96712 1.04832 1.04236 1.20789 0.92866 0.98067 0.98348 1.20763 0.99755 0.99836 1.03613 1.21243 0.94002 0.98113 0.97096 1.17572 0.91542 0.97024 1.00622 1.41154 1.58416 1.22530 1.07392 1.18105 0.90795 0.86956 0.93011 1.20605 1.06582 1.00403 0.94145 1.20861 0.96243 0.93638 0.99645 1.19077 1.02687 0.97997 0.93266 1.20943 1.00321 0.97396 0.93894 1.23123 1.00365 1.02585 0.95004 1.23057 0.92725 1.01593 1.04219 1.20878 0.96716 0.96466 0.94981 1.20766 1.04878 0.98328 0.99065 0.89934 0.88539 0.85540 0.84953 0.86101 0.76252 0.88748 0.86024 0.85510 0.89417 0.86463 0.86762 0.90876 0.83786 0.84959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.79 13.93 21.82 0.30 -47.48 16 2 C 0.04 2.31 5.44 85.24 0.46 2.77 16 3 Si 0.97 43.30 24.50 68.60 1.68 44.98 16 4 H -0.26 -11.01 6.54 99.48 0.65 -10.36 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.25 -11.49 6.94 99.48 0.69 -10.79 16 7 C -0.45 -25.30 9.05 23.36 0.21 -25.08 16 8 H 0.06 3.56 6.76 -2.91 -0.02 3.54 16 9 C 0.07 3.59 4.67 -21.16 -0.10 3.49 16 10 C -0.25 -11.46 7.11 22.46 0.16 -11.30 16 11 C -0.08 -3.24 9.96 22.01 0.22 -3.02 16 12 C -0.22 -8.01 10.03 22.41 0.22 -7.78 16 13 C -0.08 -3.28 9.96 22.38 0.22 -3.05 16 14 C 0.03 1.17 4.54 39.02 0.18 1.35 16 15 N -0.67 -27.38 4.87 -179.35 -0.87 -28.25 16 16 C 0.21 8.71 5.47 38.26 0.21 8.92 16 17 C -0.19 -8.25 9.02 22.41 0.20 -8.05 16 18 C -0.09 -3.13 9.29 22.25 0.21 -2.93 16 19 C -0.13 -4.12 5.61 -19.83 -0.11 -4.24 16 20 C -0.11 -2.68 6.04 -11.54 -0.07 -2.75 16 21 C -0.17 -3.83 9.86 30.62 0.30 -3.52 16 22 C -0.18 -4.27 10.17 30.62 0.31 -3.95 16 23 C -0.07 -2.26 9.73 22.25 0.22 -2.04 16 24 C -0.21 -7.26 9.90 22.41 0.22 -7.04 16 25 H 0.29 14.72 8.30 -92.71 -0.77 13.95 16 26 H 0.10 4.53 4.64 -2.91 -0.01 4.52 16 27 H 0.13 4.10 8.06 -2.91 -0.02 4.08 16 28 H 0.13 3.88 8.06 -2.91 -0.02 3.86 16 29 H 0.12 4.06 8.06 -2.91 -0.02 4.04 16 30 H 0.40 14.48 8.84 -92.71 -0.82 13.66 16 31 H 0.09 4.42 6.78 -2.91 -0.02 4.40 16 32 H 0.12 4.07 6.01 -2.91 -0.02 4.05 16 33 H 0.13 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.09 2.09 6.17 -2.39 -0.01 2.07 16 35 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 39 H 0.13 3.99 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -61.48 320.09 4.36 -57.13 By element: Atomic # 1 Polarization: 41.66 SS G_CDS: 0.18 Total: 41.84 kcal Atomic # 6 Polarization: -71.29 SS G_CDS: 3.07 Total: -68.22 kcal Atomic # 7 Polarization: -75.16 SS G_CDS: -0.57 Total: -75.73 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 1.68 Total: 44.98 kcal Total: -61.48 4.36 -57.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201683329.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.317 kcal (2) G-P(sol) polarization free energy of solvation -61.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds