Wall clock time and date at job start Wed Apr 15 2020 11:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30773 * 1 3 3 Si 1.86795 * 120.00461 * 2 1 4 4 H 1.48502 * 109.47605 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47198 * 300.00140 * 3 2 1 6 6 H 1.48507 * 109.47065 * 59.99373 * 3 2 1 7 7 C 1.40081 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00189 * 197.76351 * 7 2 1 9 9 C 1.40885 * 119.99931 * 17.76067 * 7 2 1 10 10 C 1.40747 * 120.32832 * 24.55041 * 9 7 2 11 11 C 1.36433 * 119.98380 * 179.97438 * 10 9 7 12 12 C 1.38923 * 120.68729 * 359.97438 * 11 10 9 13 13 C 1.38090 * 120.67396 * 0.02562 * 12 11 10 14 14 C 1.39161 * 119.98227 * 359.97438 * 13 12 11 15 15 C 1.47870 * 120.33436 * 179.97438 * 14 13 12 16 16 C 1.39498 * 119.97600 * 64.72665 * 15 14 13 17 17 C 1.37918 * 119.65398 * 179.72005 * 16 15 14 18 18 C 1.38206 * 120.03442 * 0.64547 * 17 16 15 19 19 C 1.38883 * 120.69600 * 359.70130 * 18 17 16 20 20 C 1.37557 * 119.81781 * 359.85144 * 19 18 17 21 21 C 1.50697 * 121.74005 * 180.53097 * 20 19 18 22 22 C 1.52893 * 109.97550 * 343.05559 * 21 20 19 23 23 N 1.47165 * 108.49440 * 50.29545 * 22 21 20 24 24 C 1.46618 * 110.24627 * 288.84349 * 23 22 21 25 25 H 0.96995 * 119.99477 * 0.02562 * 1 2 3 26 26 H 1.08005 * 120.00818 * 0.25244 * 10 9 7 27 27 H 1.08003 * 119.65908 * 179.97438 * 11 10 9 28 28 H 1.08003 * 119.66189 * 180.02562 * 12 11 10 29 29 H 1.07999 * 120.01080 * 179.97438 * 13 12 11 30 30 H 1.07999 * 120.17344 * 359.97438 * 16 15 14 31 31 H 1.08006 * 119.98402 * 180.36326 * 17 16 15 32 32 H 1.07994 * 119.65134 * 179.68423 * 18 17 16 33 33 H 1.08997 * 109.38708 * 103.21856 * 21 20 19 34 34 H 1.09005 * 109.38173 * 222.90730 * 21 20 19 35 35 H 1.09002 * 109.63340 * 290.59436 * 22 21 20 36 36 H 1.08997 * 109.79559 * 170.09805 * 22 21 20 37 37 H 1.00892 * 111.00273 * 165.41903 * 23 22 21 38 38 H 1.09001 * 109.26811 * 292.32561 * 24 23 22 39 39 H 1.08997 * 109.27444 * 172.85449 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2418 1.6176 0.0000 4 1 3.7018 1.3463 0.0006 5 1 1.8831 2.3964 -1.2125 6 1 1.8830 2.3964 1.2125 7 6 2.0081 -1.2132 0.0005 8 1 3.0494 -1.2354 0.2859 9 6 1.3540 -2.4043 -0.3711 10 6 0.2232 -2.3628 -1.2081 11 6 -0.4045 -3.5207 -1.5641 12 6 0.0606 -4.7481 -1.1090 13 6 1.1675 -4.8211 -0.2867 14 6 1.8292 -3.6575 0.0937 15 6 3.0150 -3.7267 0.9745 16 6 4.1785 -4.3542 0.5290 17 6 5.2824 -4.4097 1.3538 18 6 5.2287 -3.8574 2.6196 19 6 4.0722 -3.2372 3.0740 20 6 2.9675 -3.1673 2.2573 21 6 1.6944 -2.4943 2.7017 22 6 1.6950 -2.3271 4.2214 23 7 2.9670 -1.7048 4.6221 24 6 4.0699 -2.6579 4.4646 25 1 -0.4849 0.8400 -0.0004 26 1 -0.1448 -1.4149 -1.5722 27 1 -1.2721 -3.4827 -2.2063 28 1 -0.4488 -5.6545 -1.4015 29 1 1.5196 -5.7810 0.0611 30 1 4.2159 -4.7906 -0.4582 31 1 6.1879 -4.8891 1.0121 32 1 6.0952 -3.9090 3.2622 33 1 1.6193 -1.5146 2.2298 34 1 0.8406 -3.1035 2.4051 35 1 1.5988 -3.3030 4.6973 36 1 0.8642 -1.6892 4.5229 37 1 2.9187 -1.3609 5.5694 38 1 3.9554 -3.4636 5.1898 39 1 5.0158 -2.1462 4.6426 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236351860.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:43 Heat of formation + Delta-G solvation = 36.467523 kcal Electronic energy + Delta-G solvation = -21738.615517 eV Core-core repulsion = 18802.575967 eV Total energy + Delta-G solvation = -2936.039550 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.132 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.52061 -37.39829 -35.88489 -33.73953 -32.50471 -30.45476 -29.70427 -29.47254 -27.58225 -25.24407 -24.00647 -22.61422 -22.07246 -20.81518 -19.39895 -18.82527 -17.27012 -16.27932 -15.56733 -15.24872 -14.91535 -14.52258 -14.16757 -13.91979 -13.71533 -13.41403 -13.02473 -12.62266 -12.41829 -12.12642 -11.92018 -11.76861 -11.48102 -11.36441 -11.12649 -10.96948 -10.80970 -10.70911 -10.44592 -10.23699 -9.92070 -9.64934 -9.36959 -9.14324 -8.31058 -7.89138 -7.78226 -7.42056 -7.21430 -6.79853 -4.35822 1.99950 2.12714 2.77283 3.01290 3.09335 3.16387 3.24192 3.93851 4.42325 4.55999 4.62120 5.18166 5.40511 5.53979 5.61650 5.68832 5.71204 5.80646 5.80922 5.87515 6.08765 6.17886 6.22641 6.40441 6.41845 6.57664 6.60543 6.77158 6.84879 7.02399 7.10602 7.14889 7.20488 7.25223 7.32899 7.39882 7.48257 7.57620 7.69616 7.76649 7.92480 8.06388 8.10410 8.25508 8.60938 8.84810 8.94459 10.10501 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.012512 B = 0.009154 C = 0.006748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.324471 B = 3057.997803 C = 4148.425555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.080 3.920 3 Si 0.901 3.099 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.440 4.440 8 H 0.081 0.919 9 C 0.130 3.870 10 C -0.161 4.161 11 C -0.102 4.102 12 C -0.247 4.247 13 C -0.072 4.072 14 C -0.186 4.186 15 C 0.017 3.983 16 C -0.126 4.126 17 C -0.131 4.131 18 C -0.140 4.140 19 C -0.095 4.095 20 C -0.041 4.041 21 C -0.077 4.077 22 C 0.055 3.945 23 N -0.682 5.682 24 C 0.105 3.895 25 H 0.281 0.719 26 H 0.118 0.882 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.115 0.885 34 H 0.073 0.927 35 H 0.025 0.975 36 H 0.072 0.928 37 H 0.336 0.664 38 H 0.033 0.967 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.529 -2.657 6.114 8.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.139 4.139 3 Si 0.725 3.275 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.469 4.469 8 H 0.099 0.901 9 C 0.128 3.872 10 C -0.181 4.181 11 C -0.121 4.121 12 C -0.266 4.266 13 C -0.091 4.091 14 C -0.188 4.188 15 C 0.017 3.983 16 C -0.144 4.144 17 C -0.149 4.149 18 C -0.159 4.159 19 C -0.095 4.095 20 C -0.041 4.041 21 C -0.114 4.114 22 C -0.074 4.074 23 N -0.312 5.312 24 C -0.024 4.024 25 H 0.092 0.908 26 H 0.136 0.864 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.132 0.868 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.133 0.867 34 H 0.092 0.908 35 H 0.043 0.957 36 H 0.091 0.909 37 H 0.153 0.847 38 H 0.051 0.949 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.421 -2.176 5.526 7.404 hybrid contribution 0.212 0.105 0.691 0.730 sum 4.633 -2.071 6.217 8.025 Atomic orbital electron populations 1.69810 1.07564 1.29304 1.34197 1.25915 0.94636 1.01278 0.92108 0.86352 0.81476 0.81127 0.78536 1.18198 1.19833 1.19751 1.19535 0.98305 0.90817 1.38218 0.90104 1.17475 0.90499 0.90929 0.88328 1.21055 0.99172 0.97011 1.00826 1.20450 0.98572 0.93390 0.99688 1.20237 1.01822 0.96093 1.08439 1.20523 0.95630 0.95556 0.97344 1.18519 1.00132 0.93704 1.06416 1.18777 0.93254 0.94020 0.92218 1.21240 0.92865 1.01010 0.99276 1.20767 0.98071 1.01597 0.94485 1.20772 0.97064 1.01525 0.96503 1.19375 0.94075 1.00437 0.95649 1.19668 0.94999 0.96612 0.92815 1.20663 0.94457 1.03602 0.92660 1.22080 0.91014 0.96584 0.97686 1.60571 1.03991 1.37770 1.28842 1.20661 0.95041 0.93232 0.93478 0.90802 0.86405 0.89679 0.89644 0.89522 0.86849 0.87197 0.87440 0.86746 0.90823 0.95720 0.90926 0.84673 0.94930 0.90365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.14 10.96 55.55 0.61 -18.53 16 2 C 0.08 1.91 4.97 -17.31 -0.09 1.83 16 3 Si 0.90 18.69 29.60 -169.99 -5.03 13.66 16 4 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.44 -11.10 5.74 -37.89 -0.22 -11.32 16 8 H 0.08 2.12 7.06 -52.49 -0.37 1.75 16 9 C 0.13 3.30 5.11 -106.56 -0.54 2.75 16 10 C -0.16 -4.06 8.63 -39.28 -0.34 -4.40 16 11 C -0.10 -2.37 9.96 -39.98 -0.40 -2.77 16 12 C -0.25 -5.49 10.03 -39.38 -0.40 -5.88 16 13 C -0.07 -1.63 9.72 -39.29 -0.38 -2.01 16 14 C -0.19 -4.40 4.25 -104.23 -0.44 -4.84 16 15 C 0.02 0.38 4.38 -104.81 -0.46 -0.08 16 16 C -0.13 -2.46 9.74 -39.23 -0.38 -2.85 16 17 C -0.13 -2.25 10.03 -39.71 -0.40 -2.64 16 18 C -0.14 -2.35 9.64 -39.35 -0.38 -2.73 16 19 C -0.10 -1.74 5.79 -104.66 -0.61 -2.35 16 20 C -0.04 -0.85 5.24 -104.20 -0.55 -1.39 16 21 C -0.08 -1.60 4.58 -27.94 -0.13 -1.73 16 22 C 0.06 0.93 6.59 -3.73 -0.02 0.91 16 23 N -0.68 -10.71 6.88 -115.16 -0.79 -11.50 16 24 C 0.10 1.60 6.34 -5.16 -0.03 1.57 16 25 H 0.28 6.28 8.29 -40.82 -0.34 5.94 16 26 H 0.12 3.04 6.17 -52.48 -0.32 2.72 16 27 H 0.08 1.77 8.06 -52.48 -0.42 1.34 16 28 H 0.09 1.70 8.06 -52.48 -0.42 1.27 16 29 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.11 2.11 8.06 -52.49 -0.42 1.69 16 31 H 0.11 1.56 8.06 -52.48 -0.42 1.13 16 32 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.11 2.71 5.68 -51.93 -0.30 2.41 16 34 H 0.07 1.64 7.48 -51.93 -0.39 1.25 16 35 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.34 4.20 8.90 -39.30 -0.35 3.85 16 38 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 1.07 8.13 -51.93 -0.42 0.65 16 LS Contribution 313.88 15.07 4.73 4.73 Total: -1.00 -26.53 313.88 -11.33 -37.86 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -5.08 Total: 11.71 kcal Atomic # 6 Polarization: -32.17 SS G_CDS: -5.76 Total: -37.94 kcal Atomic # 7 Polarization: -29.85 SS G_CDS: -0.18 Total: -30.03 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -26.53 -11.33 -37.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236351860.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.328 kcal (2) G-P(sol) polarization free energy of solvation -26.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds