Wall clock time and date at job start Wed Apr 15 2020 11:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30773 * 1 3 3 Si 1.86795 * 120.00461 * 2 1 4 4 H 1.48502 * 109.47605 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47198 * 300.00140 * 3 2 1 6 6 H 1.48507 * 109.47065 * 59.99373 * 3 2 1 7 7 C 1.40081 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00189 * 197.76351 * 7 2 1 9 9 C 1.40885 * 119.99931 * 17.76067 * 7 2 1 10 10 C 1.40747 * 120.32832 * 24.55041 * 9 7 2 11 11 C 1.36433 * 119.98380 * 179.97438 * 10 9 7 12 12 C 1.38923 * 120.68729 * 359.97438 * 11 10 9 13 13 C 1.38090 * 120.67396 * 0.02562 * 12 11 10 14 14 C 1.39161 * 119.98227 * 359.97438 * 13 12 11 15 15 C 1.47870 * 120.33436 * 179.97438 * 14 13 12 16 16 C 1.39498 * 119.97600 * 64.72665 * 15 14 13 17 17 C 1.37918 * 119.65398 * 179.72005 * 16 15 14 18 18 C 1.38206 * 120.03442 * 0.64547 * 17 16 15 19 19 C 1.38883 * 120.69600 * 359.70130 * 18 17 16 20 20 C 1.37557 * 119.81781 * 359.85144 * 19 18 17 21 21 C 1.50697 * 121.74005 * 180.53097 * 20 19 18 22 22 C 1.52893 * 109.97550 * 343.05559 * 21 20 19 23 23 N 1.47165 * 108.49440 * 50.29545 * 22 21 20 24 24 C 1.46618 * 110.24627 * 288.84349 * 23 22 21 25 25 H 0.96995 * 119.99477 * 0.02562 * 1 2 3 26 26 H 1.08005 * 120.00818 * 0.25244 * 10 9 7 27 27 H 1.08003 * 119.65908 * 179.97438 * 11 10 9 28 28 H 1.08003 * 119.66189 * 180.02562 * 12 11 10 29 29 H 1.07999 * 120.01080 * 179.97438 * 13 12 11 30 30 H 1.07999 * 120.17344 * 359.97438 * 16 15 14 31 31 H 1.08006 * 119.98402 * 180.36326 * 17 16 15 32 32 H 1.07994 * 119.65134 * 179.68423 * 18 17 16 33 33 H 1.08997 * 109.38708 * 103.21856 * 21 20 19 34 34 H 1.09005 * 109.38173 * 222.90730 * 21 20 19 35 35 H 1.09002 * 109.63340 * 290.59436 * 22 21 20 36 36 H 1.08997 * 109.79559 * 170.09805 * 22 21 20 37 37 H 1.00892 * 111.00273 * 165.41903 * 23 22 21 38 38 H 1.09001 * 109.26811 * 292.32561 * 24 23 22 39 39 H 1.08997 * 109.27444 * 172.85449 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2418 1.6176 0.0000 4 1 3.7018 1.3463 0.0006 5 1 1.8831 2.3964 -1.2125 6 1 1.8830 2.3964 1.2125 7 6 2.0081 -1.2132 0.0005 8 1 3.0494 -1.2354 0.2859 9 6 1.3540 -2.4043 -0.3711 10 6 0.2232 -2.3628 -1.2081 11 6 -0.4045 -3.5207 -1.5641 12 6 0.0606 -4.7481 -1.1090 13 6 1.1675 -4.8211 -0.2867 14 6 1.8292 -3.6575 0.0937 15 6 3.0150 -3.7267 0.9745 16 6 4.1785 -4.3542 0.5290 17 6 5.2824 -4.4097 1.3538 18 6 5.2287 -3.8574 2.6196 19 6 4.0722 -3.2372 3.0740 20 6 2.9675 -3.1673 2.2573 21 6 1.6944 -2.4943 2.7017 22 6 1.6950 -2.3271 4.2214 23 7 2.9670 -1.7048 4.6221 24 6 4.0699 -2.6579 4.4646 25 1 -0.4849 0.8400 -0.0004 26 1 -0.1448 -1.4149 -1.5722 27 1 -1.2721 -3.4827 -2.2063 28 1 -0.4488 -5.6545 -1.4015 29 1 1.5196 -5.7810 0.0611 30 1 4.2159 -4.7906 -0.4582 31 1 6.1879 -4.8891 1.0121 32 1 6.0952 -3.9090 3.2622 33 1 1.6193 -1.5146 2.2298 34 1 0.8406 -3.1035 2.4051 35 1 1.5988 -3.3030 4.6973 36 1 0.8642 -1.6892 4.5229 37 1 2.9187 -1.3609 5.5694 38 1 3.9554 -3.4636 5.1898 39 1 5.0158 -2.1462 4.6426 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236351860.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:42 Heat of formation + Delta-G solvation = 23.362851 kcal Electronic energy + Delta-G solvation = -21739.183778 eV Core-core repulsion = 18802.575967 eV Total energy + Delta-G solvation = -2936.607811 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.132 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.99462 -39.10805 -37.25227 -35.56662 -34.04003 -31.90213 -31.42743 -31.09883 -29.16621 -27.06831 -25.35300 -24.02446 -23.68731 -22.63894 -21.03012 -20.24550 -19.11926 -17.70938 -17.16981 -16.81009 -16.35136 -16.12829 -15.63082 -15.44978 -15.23282 -14.97162 -14.59217 -14.38808 -13.84461 -13.72874 -13.46333 -13.34961 -13.03266 -12.92791 -12.78058 -12.63886 -12.49162 -12.21477 -12.16594 -11.78931 -11.48686 -11.31476 -11.10378 -10.94301 -9.67002 -9.40327 -9.28402 -9.18863 -8.92497 -8.59748 -6.24321 0.50265 0.67021 1.01725 1.21067 1.37151 1.48891 1.51903 2.20895 2.75620 3.00477 3.35699 3.75108 3.91265 4.03833 4.20242 4.30176 4.37034 4.46060 4.47117 4.57472 4.60058 4.60858 4.69288 4.79048 4.89041 5.01009 5.07758 5.16773 5.28380 5.32305 5.37076 5.49050 5.59852 5.67746 5.72145 5.81729 5.96664 6.03963 6.07909 6.17658 6.22591 6.36722 6.41508 6.63187 6.73407 6.98054 7.08699 8.31888 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.012512 B = 0.009154 C = 0.006748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.324471 B = 3057.997803 C = 4148.425555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.048 3.952 3 Si 0.960 3.040 4 H -0.267 1.267 5 H -0.264 1.264 6 H -0.265 1.265 7 C -0.454 4.454 8 H 0.062 0.938 9 C 0.106 3.894 10 C -0.189 4.189 11 C -0.109 4.109 12 C -0.246 4.246 13 C -0.084 4.084 14 C -0.186 4.186 15 C -0.016 4.016 16 C -0.141 4.141 17 C -0.125 4.125 18 C -0.133 4.133 19 C -0.103 4.103 20 C -0.065 4.065 21 C -0.069 4.069 22 C 0.064 3.936 23 N -0.693 5.693 24 C 0.105 3.895 25 H 0.288 0.712 26 H 0.103 0.897 27 H 0.106 0.894 28 H 0.114 0.886 29 H 0.105 0.895 30 H 0.114 0.886 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.079 0.921 34 H 0.042 0.958 35 H 0.036 0.964 36 H 0.079 0.921 37 H 0.357 0.643 38 H 0.056 0.944 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.523 -3.226 7.749 10.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.168 4.168 3 Si 0.782 3.218 4 H -0.191 1.191 5 H -0.188 1.188 6 H -0.190 1.190 7 C -0.483 4.483 8 H 0.080 0.920 9 C 0.104 3.896 10 C -0.208 4.208 11 C -0.127 4.127 12 C -0.265 4.265 13 C -0.102 4.102 14 C -0.188 4.188 15 C -0.016 4.016 16 C -0.159 4.159 17 C -0.143 4.143 18 C -0.151 4.151 19 C -0.104 4.104 20 C -0.066 4.066 21 C -0.106 4.106 22 C -0.065 4.065 23 N -0.326 5.326 24 C -0.024 4.024 25 H 0.099 0.901 26 H 0.121 0.879 27 H 0.124 0.876 28 H 0.132 0.868 29 H 0.123 0.877 30 H 0.132 0.868 31 H 0.163 0.837 32 H 0.166 0.834 33 H 0.097 0.903 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.098 0.902 37 H 0.177 0.823 38 H 0.074 0.926 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.409 -2.749 7.171 10.003 hybrid contribution -0.364 0.154 0.206 0.445 sum 6.045 -2.596 7.377 9.884 Atomic orbital electron populations 1.69842 1.08535 1.30317 1.34852 1.26498 0.95245 1.03580 0.91521 0.85471 0.79586 0.77723 0.78989 1.19068 1.18827 1.18958 1.19391 0.97431 0.91818 1.39652 0.92004 1.17744 0.91051 0.91942 0.88907 1.21055 1.00316 0.97216 1.02232 1.20707 0.99053 0.93170 0.99812 1.20582 1.01546 0.96782 1.07584 1.20832 0.95778 0.96150 0.97478 1.18858 1.00669 0.93422 1.05800 1.18899 0.93571 0.96294 0.92854 1.21374 0.93234 1.01320 0.99990 1.21166 0.98236 1.00655 0.94246 1.21243 0.97608 0.99583 0.96686 1.19845 0.93612 1.00027 0.96893 1.19764 0.95926 0.97606 0.93254 1.20417 0.93831 1.00988 0.95345 1.21908 0.92225 0.97545 0.94836 1.60462 1.03417 1.38121 1.30568 1.20774 0.95706 0.93978 0.91898 0.90136 0.87945 0.87566 0.86822 0.87669 0.86796 0.83670 0.83404 0.90333 0.93969 0.94577 0.90219 0.82290 0.92643 0.88067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.29 10.96 21.85 0.24 -41.05 16 2 C 0.05 2.40 4.97 85.30 0.42 2.83 16 3 Si 0.96 39.33 29.60 68.60 2.03 41.36 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 6 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 7 C -0.45 -24.12 5.74 23.37 0.13 -23.98 16 8 H 0.06 3.42 7.06 -2.91 -0.02 3.40 16 9 C 0.11 5.64 5.11 -21.12 -0.11 5.53 16 10 C -0.19 -9.95 8.63 22.46 0.19 -9.76 16 11 C -0.11 -5.14 9.96 22.01 0.22 -4.93 16 12 C -0.25 -10.92 10.03 22.40 0.22 -10.70 16 13 C -0.08 -3.84 9.72 22.46 0.22 -3.62 16 14 C -0.19 -9.12 4.25 -19.61 -0.08 -9.20 16 15 C -0.02 -0.72 4.38 -19.99 -0.09 -0.81 16 16 C -0.14 -5.46 9.74 22.50 0.22 -5.24 16 17 C -0.13 -3.94 10.03 22.19 0.22 -3.71 16 18 C -0.13 -3.98 9.64 22.42 0.22 -3.76 16 19 C -0.10 -3.57 5.79 -19.89 -0.12 -3.69 16 20 C -0.07 -2.73 5.24 -19.59 -0.10 -2.84 16 21 C -0.07 -2.95 4.58 29.81 0.14 -2.82 16 22 C 0.06 2.12 6.59 86.22 0.57 2.69 16 23 N -0.69 -20.27 6.88 -518.26 -3.56 -23.83 16 24 C 0.11 2.84 6.34 85.59 0.54 3.38 16 25 H 0.29 13.32 8.29 -92.71 -0.77 12.55 16 26 H 0.10 5.60 6.17 -2.91 -0.02 5.59 16 27 H 0.11 4.43 8.06 -2.91 -0.02 4.40 16 28 H 0.11 4.34 8.06 -2.91 -0.02 4.31 16 29 H 0.11 4.30 8.06 -2.91 -0.02 4.28 16 30 H 0.11 4.24 8.06 -2.91 -0.02 4.22 16 31 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 32 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 33 H 0.08 3.94 5.68 -2.39 -0.01 3.93 16 34 H 0.04 2.00 7.48 -2.38 -0.02 1.98 16 35 H 0.04 1.10 8.05 -2.39 -0.02 1.09 16 36 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.36 7.87 8.90 -89.70 -0.80 7.07 16 38 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.10 2.30 8.13 -2.39 -0.02 2.28 16 Total: -1.00 -60.22 313.88 1.79 -58.43 By element: Atomic # 1 Polarization: 35.45 SS G_CDS: 0.27 Total: 35.72 kcal Atomic # 6 Polarization: -73.44 SS G_CDS: 2.82 Total: -70.62 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: -3.32 Total: -64.88 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.36 kcal Total: -60.22 1.79 -58.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236351860.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.788 kcal (2) G-P(sol) polarization free energy of solvation -60.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds