Wall clock time and date at job start Wed Apr 15 2020 11:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30799 * 1 3 3 Si 1.86803 * 119.99734 * 2 1 4 4 H 1.48498 * 109.47556 * 275.40584 * 3 2 1 5 5 H 1.48505 * 109.46894 * 35.40579 * 3 2 1 6 6 H 1.48494 * 109.46989 * 155.40488 * 3 2 1 7 7 C 1.40007 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00082 * 342.06319 * 7 2 1 9 9 C 1.41030 * 119.99941 * 161.79243 * 7 2 1 10 10 C 1.40930 * 120.11805 * 329.91729 * 9 7 2 11 11 C 1.36258 * 119.87272 * 179.71933 * 10 9 7 12 12 C 1.39932 * 120.12062 * 0.53131 * 11 10 9 13 13 C 1.47988 * 119.87609 * 179.74020 * 12 11 10 14 14 C 1.39638 * 120.24070 * 180.02562 * 13 12 11 15 15 C 1.37688 * 119.71820 * 180.02562 * 14 13 12 16 16 C 1.38933 * 120.58395 * 359.97438 * 15 14 13 17 17 C 1.38026 * 119.94724 * 359.82220 * 16 15 14 18 18 C 1.38402 * 119.99483 * 0.02562 * 17 16 15 19 19 C 1.50748 * 121.64908 * 180.34128 * 17 16 15 20 20 C 1.52884 * 109.95388 * 342.92951 * 19 17 16 21 21 N 1.47154 * 108.49493 * 50.48418 * 20 19 17 22 22 C 1.46610 * 110.27008 * 288.68752 * 21 20 19 23 23 C 1.39933 * 120.24372 * 359.76555 * 12 11 10 24 24 C 1.36257 * 120.11938 * 359.95232 * 23 12 11 25 25 H 0.96996 * 119.99966 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.06017 * 359.97438 * 10 9 7 27 27 H 1.07995 * 119.93259 * 180.29908 * 11 10 9 28 28 H 1.07992 * 120.13671 * 0.04716 * 14 13 12 29 29 H 1.07998 * 119.70714 * 180.02562 * 15 14 13 30 30 H 1.08001 * 119.88245 * 180.11714 * 18 17 16 31 31 H 1.09007 * 109.38757 * 103.07306 * 19 17 16 32 32 H 1.08999 * 109.39302 * 222.87555 * 19 17 16 33 33 H 1.08997 * 109.63453 * 170.18975 * 20 19 17 34 34 H 1.09003 * 109.63481 * 290.58081 * 20 19 17 35 35 H 1.00901 * 111.00384 * 165.25182 * 21 20 19 36 36 H 1.09004 * 109.26512 * 292.30119 * 22 21 20 37 37 H 1.08997 * 109.26780 * 172.83971 * 22 21 20 38 38 H 1.07996 * 119.94425 * 179.97438 * 23 12 11 39 39 H 1.07997 * 120.06257 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 2.3752 2.1125 -1.3938 5 1 1.5010 2.6170 0.8112 6 1 3.5919 1.4100 0.5827 7 6 2.0081 -1.2125 -0.0005 8 1 1.5075 -2.1252 0.2871 9 6 3.3654 -1.2428 -0.3822 10 6 3.8578 -0.3115 -1.3184 11 6 5.1713 -0.3417 -1.6792 12 6 6.0284 -1.3021 -1.1305 13 6 7.4529 -1.3336 -1.5306 14 6 8.3148 -2.2890 -0.9881 15 6 9.6382 -2.3081 -1.3676 16 6 10.1237 -1.3855 -2.2859 17 6 9.2753 -0.4416 -2.8285 18 6 7.9423 -0.4144 -2.4572 19 6 9.7594 0.5724 -3.8335 20 6 11.2856 0.6549 -3.7977 21 7 11.8293 -0.7088 -3.8987 22 6 11.5829 -1.4471 -2.6563 23 6 5.5435 -2.2331 -0.2052 24 6 4.2330 -2.2083 0.1670 25 1 -0.4850 0.8400 -0.0004 26 1 3.1960 0.4273 -1.7458 27 1 5.5507 0.3746 -2.3929 28 1 7.9447 -3.0099 -0.2743 29 1 10.3045 -3.0474 -0.9483 30 1 7.2797 0.3238 -2.8843 31 1 9.4363 0.2756 -4.8314 32 1 9.3398 1.5492 -3.5929 33 1 11.6398 1.2535 -4.6369 34 1 11.6059 1.1116 -2.8613 35 1 12.8137 -0.6902 -4.1192 36 1 12.1765 -1.0091 -1.8539 37 1 11.8758 -2.4882 -2.7925 38 1 6.2091 -2.9725 0.2150 39 1 3.8596 -2.9275 0.8809 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240455493.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:46 Heat of formation + Delta-G solvation = 32.817587 kcal Electronic energy + Delta-G solvation = -20290.249034 eV Core-core repulsion = 17354.051210 eV Total energy + Delta-G solvation = -2936.197823 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.132 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.77864 -38.03633 -36.24873 -33.84621 -32.57828 -31.77133 -30.16036 -29.40504 -28.67239 -25.67399 -23.71758 -23.11099 -22.26014 -21.20926 -20.29521 -18.97092 -17.59038 -16.82500 -16.09773 -15.55165 -15.27018 -14.64117 -14.57613 -14.23420 -13.68282 -13.64914 -13.43580 -13.03346 -12.80809 -12.70707 -12.36517 -12.30591 -12.06280 -11.81511 -11.62929 -11.38438 -10.91241 -10.78778 -10.66631 -10.44926 -10.22597 -9.95933 -9.61991 -9.26402 -8.83224 -8.48651 -8.32884 -7.89654 -7.14790 -7.12961 -4.57760 1.44211 1.79655 2.64625 2.71072 3.03615 3.15047 3.24212 3.86930 4.04044 4.10562 4.56682 4.75633 4.86579 5.12241 5.21680 5.28144 5.35746 5.37185 5.44088 5.49310 5.63652 5.71618 5.81528 5.93100 5.97222 6.02598 6.04993 6.40477 6.42793 6.49637 6.64187 6.73339 6.74576 6.81266 6.95314 7.02758 7.05788 7.21949 7.35879 7.38744 7.62295 7.73958 7.80905 7.99402 8.18868 8.52368 8.63388 9.87378 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.032095 B = 0.003877 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.203956 B = 7219.798130 C = 7895.534043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.082 3.918 3 Si 0.915 3.085 4 H -0.268 1.268 5 H -0.289 1.289 6 H -0.242 1.242 7 C -0.431 4.431 8 H 0.094 0.906 9 C 0.098 3.902 10 C -0.242 4.242 11 C -0.050 4.050 12 C -0.205 4.205 13 C 0.023 3.977 14 C -0.143 4.143 15 C -0.106 4.106 16 C -0.123 4.123 17 C -0.059 4.059 18 C -0.146 4.146 19 C -0.076 4.076 20 C 0.056 3.944 21 N -0.685 5.685 22 C 0.105 3.895 23 C -0.057 4.057 24 C -0.213 4.213 25 H 0.289 0.711 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.120 0.880 29 H 0.112 0.888 30 H 0.118 0.882 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.034 0.966 35 H 0.341 0.659 36 H 0.035 0.965 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.662 1.561 -4.235 18.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.139 4.139 3 Si 0.741 3.259 4 H -0.194 1.194 5 H -0.216 1.216 6 H -0.165 1.165 7 C -0.458 4.458 8 H 0.112 0.888 9 C 0.095 3.905 10 C -0.261 4.261 11 C -0.068 4.068 12 C -0.206 4.206 13 C 0.022 3.978 14 C -0.161 4.161 15 C -0.124 4.124 16 C -0.124 4.124 17 C -0.059 4.059 18 C -0.164 4.164 19 C -0.113 4.113 20 C -0.073 4.073 21 N -0.315 5.315 22 C -0.024 4.024 23 C -0.075 4.075 24 C -0.232 4.232 25 H 0.099 0.901 26 H 0.119 0.881 27 H 0.115 0.885 28 H 0.138 0.862 29 H 0.130 0.870 30 H 0.136 0.864 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.053 0.947 35 H 0.159 0.841 36 H 0.053 0.947 37 H 0.099 0.901 38 H 0.116 0.884 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 16.797 1.393 -4.538 17.455 hybrid contribution 0.687 1.080 0.620 1.422 sum 17.484 2.473 -3.918 18.087 Atomic orbital electron populations 1.69678 1.08259 1.30763 1.33097 1.26290 0.94776 1.02145 0.90686 0.86246 0.81382 0.79244 0.79073 1.19391 1.21616 1.16515 1.19627 0.93245 0.96161 1.36798 0.88806 1.17821 0.92879 0.90765 0.89035 1.20727 0.95673 1.05242 1.04498 1.20459 0.93332 0.95996 0.97025 1.18066 0.91274 1.03461 1.07759 1.18895 0.92964 0.92823 0.93068 1.21087 0.93118 0.99989 1.01939 1.20786 0.95552 0.98352 0.97727 1.19317 0.94658 0.98070 1.00307 1.19320 0.93255 0.96251 0.97090 1.21114 0.94509 1.00810 1.00006 1.20523 0.94609 0.97575 0.98641 1.21956 0.95626 0.89523 1.00236 1.60571 1.20897 1.15294 1.34768 1.20666 0.93192 0.98692 0.89804 1.20499 0.95278 0.96263 0.95476 1.20725 0.93174 1.04291 1.05038 0.90062 0.88069 0.88504 0.86224 0.86950 0.86412 0.90205 0.90782 0.90648 0.94737 0.84149 0.94664 0.90134 0.88366 0.87960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.46 13.93 55.55 0.77 -19.68 16 2 C 0.08 2.08 5.40 -17.33 -0.09 1.99 16 3 Si 0.91 20.28 24.52 -169.99 -4.17 16.12 16 4 H -0.27 -5.76 6.71 56.52 0.38 -5.38 16 5 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.24 -5.56 6.87 56.52 0.39 -5.17 16 7 C -0.43 -11.31 9.55 -37.86 -0.36 -11.67 16 8 H 0.09 2.56 8.06 -52.48 -0.42 2.13 16 9 C 0.10 2.45 5.10 -106.80 -0.54 1.90 16 10 C -0.24 -5.76 7.11 -39.28 -0.28 -6.04 16 11 C -0.05 -1.09 9.36 -39.66 -0.37 -1.46 16 12 C -0.20 -4.33 5.90 -104.63 -0.62 -4.95 16 13 C 0.02 0.42 5.88 -104.95 -0.62 -0.19 16 14 C -0.14 -2.40 9.43 -39.26 -0.37 -2.77 16 15 C -0.11 -1.55 9.63 -39.52 -0.38 -1.93 16 16 C -0.12 -1.79 5.81 -104.46 -0.61 -2.40 16 17 C -0.06 -0.90 5.77 -104.62 -0.60 -1.51 16 18 C -0.15 -2.52 9.04 -39.09 -0.35 -2.88 16 19 C -0.08 -0.93 5.94 -27.92 -0.17 -1.10 16 20 C 0.06 0.57 6.58 -3.74 -0.02 0.55 16 21 N -0.68 -7.19 6.87 -115.17 -0.79 -7.98 16 22 C 0.11 1.20 6.34 -5.15 -0.03 1.16 16 23 C -0.06 -1.20 9.36 -39.66 -0.37 -1.57 16 24 C -0.21 -4.87 9.73 -39.27 -0.38 -5.26 16 25 H 0.29 6.69 8.29 -40.82 -0.34 6.35 16 26 H 0.10 2.38 4.75 -52.49 -0.25 2.13 16 27 H 0.10 1.87 6.18 -52.49 -0.32 1.55 16 28 H 0.12 1.86 6.20 -52.49 -0.33 1.53 16 29 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.12 1.94 6.18 -52.49 -0.32 1.61 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.03 0.35 8.05 -51.93 -0.42 -0.06 16 35 H 0.34 2.66 8.90 -39.29 -0.35 2.31 16 36 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.83 8.13 -51.93 -0.42 0.41 16 38 H 0.10 1.79 6.19 -52.49 -0.32 1.46 16 39 H 0.10 2.19 8.06 -52.49 -0.42 1.76 16 LS Contribution 311.51 15.07 4.69 4.69 Total: -1.00 -27.55 311.51 -10.53 -38.08 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -4.87 Total: 6.90 kcal Atomic # 6 Polarization: -31.96 SS G_CDS: -6.17 Total: -38.13 kcal Atomic # 7 Polarization: -27.64 SS G_CDS: -0.02 Total: -27.66 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.17 Total: 16.12 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.55 -10.53 -38.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240455493.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.900 kcal (2) G-P(sol) polarization free energy of solvation -27.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds