Wall clock time and date at job start Wed Apr 15 2020 11:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30799 * 1 3 3 Si 1.86803 * 119.99734 * 2 1 4 4 H 1.48498 * 109.47556 * 275.40584 * 3 2 1 5 5 H 1.48505 * 109.46894 * 35.40579 * 3 2 1 6 6 H 1.48494 * 109.46989 * 155.40488 * 3 2 1 7 7 C 1.40007 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00082 * 342.06319 * 7 2 1 9 9 C 1.41030 * 119.99941 * 161.79243 * 7 2 1 10 10 C 1.40930 * 120.11805 * 329.91729 * 9 7 2 11 11 C 1.36258 * 119.87272 * 179.71933 * 10 9 7 12 12 C 1.39932 * 120.12062 * 0.53131 * 11 10 9 13 13 C 1.47988 * 119.87609 * 179.74020 * 12 11 10 14 14 C 1.39638 * 120.24070 * 180.02562 * 13 12 11 15 15 C 1.37688 * 119.71820 * 180.02562 * 14 13 12 16 16 C 1.38933 * 120.58395 * 359.97438 * 15 14 13 17 17 C 1.38026 * 119.94724 * 359.82220 * 16 15 14 18 18 C 1.38402 * 119.99483 * 0.02562 * 17 16 15 19 19 C 1.50748 * 121.64908 * 180.34128 * 17 16 15 20 20 C 1.52884 * 109.95388 * 342.92951 * 19 17 16 21 21 N 1.47154 * 108.49493 * 50.48418 * 20 19 17 22 22 C 1.46610 * 110.27008 * 288.68752 * 21 20 19 23 23 C 1.39933 * 120.24372 * 359.76555 * 12 11 10 24 24 C 1.36257 * 120.11938 * 359.95232 * 23 12 11 25 25 H 0.96996 * 119.99966 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.06017 * 359.97438 * 10 9 7 27 27 H 1.07995 * 119.93259 * 180.29908 * 11 10 9 28 28 H 1.07992 * 120.13671 * 0.04716 * 14 13 12 29 29 H 1.07998 * 119.70714 * 180.02562 * 15 14 13 30 30 H 1.08001 * 119.88245 * 180.11714 * 18 17 16 31 31 H 1.09007 * 109.38757 * 103.07306 * 19 17 16 32 32 H 1.08999 * 109.39302 * 222.87555 * 19 17 16 33 33 H 1.08997 * 109.63453 * 170.18975 * 20 19 17 34 34 H 1.09003 * 109.63481 * 290.58081 * 20 19 17 35 35 H 1.00901 * 111.00384 * 165.25182 * 21 20 19 36 36 H 1.09004 * 109.26512 * 292.30119 * 22 21 20 37 37 H 1.08997 * 109.26780 * 172.83971 * 22 21 20 38 38 H 1.07996 * 119.94425 * 179.97438 * 23 12 11 39 39 H 1.07997 * 120.06257 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 2.3752 2.1125 -1.3938 5 1 1.5010 2.6170 0.8112 6 1 3.5919 1.4100 0.5827 7 6 2.0081 -1.2125 -0.0005 8 1 1.5075 -2.1252 0.2871 9 6 3.3654 -1.2428 -0.3822 10 6 3.8578 -0.3115 -1.3184 11 6 5.1713 -0.3417 -1.6792 12 6 6.0284 -1.3021 -1.1305 13 6 7.4529 -1.3336 -1.5306 14 6 8.3148 -2.2890 -0.9881 15 6 9.6382 -2.3081 -1.3676 16 6 10.1237 -1.3855 -2.2859 17 6 9.2753 -0.4416 -2.8285 18 6 7.9423 -0.4144 -2.4572 19 6 9.7594 0.5724 -3.8335 20 6 11.2856 0.6549 -3.7977 21 7 11.8293 -0.7088 -3.8987 22 6 11.5829 -1.4471 -2.6563 23 6 5.5435 -2.2331 -0.2052 24 6 4.2330 -2.2083 0.1670 25 1 -0.4850 0.8400 -0.0004 26 1 3.1960 0.4273 -1.7458 27 1 5.5507 0.3746 -2.3929 28 1 7.9447 -3.0099 -0.2743 29 1 10.3045 -3.0474 -0.9483 30 1 7.2797 0.3238 -2.8843 31 1 9.4363 0.2756 -4.8314 32 1 9.3398 1.5492 -3.5929 33 1 11.6398 1.2535 -4.6369 34 1 11.6059 1.1116 -2.8613 35 1 12.8137 -0.6902 -4.1192 36 1 12.1765 -1.0091 -1.8539 37 1 11.8758 -2.4882 -2.7925 38 1 6.2091 -2.9725 0.2150 39 1 3.8596 -2.9275 0.8809 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240455493.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:45 Heat of formation + Delta-G solvation = 17.611182 kcal Electronic energy + Delta-G solvation = -20290.908433 eV Core-core repulsion = 17354.051210 eV Total energy + Delta-G solvation = -2936.857222 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.132 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.98329 -39.63566 -37.40067 -35.60518 -33.67616 -33.25570 -31.84064 -30.83650 -29.87248 -27.21662 -24.90897 -24.39866 -23.57364 -22.72202 -21.85785 -20.21003 -19.40962 -18.06685 -17.35943 -16.93835 -16.59940 -15.98126 -15.67843 -15.48841 -15.18473 -14.98571 -14.90112 -14.44790 -14.36502 -14.09236 -13.87820 -13.68865 -13.35294 -13.00279 -12.91503 -12.74585 -12.64213 -12.19522 -12.09208 -11.89271 -11.70849 -11.52655 -11.26651 -11.00210 -10.15890 -9.66395 -9.58194 -9.42060 -8.99239 -8.72151 -6.50115 0.01381 0.56541 0.88422 1.03761 1.24701 1.40303 1.46688 2.07931 2.48682 2.99465 3.32372 3.55484 3.80175 3.81323 4.00301 4.09529 4.25621 4.26212 4.33735 4.42446 4.50143 4.54397 4.58522 4.65431 4.75823 4.81715 4.91740 4.94489 5.06220 5.08409 5.17436 5.23281 5.28601 5.46325 5.54170 5.64398 5.70282 5.83585 5.86614 5.99397 6.13134 6.16907 6.20478 6.32190 6.56738 6.66277 6.76535 8.08334 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.032095 B = 0.003877 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.203956 B = 7219.798130 C = 7895.534043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.050 3.950 3 Si 0.965 3.035 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.475 4.475 8 H 0.062 0.938 9 C 0.078 3.922 10 C -0.251 4.251 11 C -0.064 4.064 12 C -0.184 4.184 13 C -0.017 4.017 14 C -0.146 4.146 15 C -0.108 4.108 16 C -0.116 4.116 17 C -0.072 4.072 18 C -0.151 4.151 19 C -0.079 4.079 20 C 0.058 3.942 21 N -0.694 5.694 22 C 0.104 3.896 23 C -0.063 4.063 24 C -0.223 4.223 25 H 0.297 0.703 26 H 0.099 0.901 27 H 0.121 0.879 28 H 0.129 0.871 29 H 0.145 0.855 30 H 0.119 0.881 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.036 0.964 35 H 0.359 0.641 36 H 0.051 0.949 37 H 0.096 0.904 38 H 0.130 0.870 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.459 2.100 -5.348 23.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.166 4.166 3 Si 0.788 3.212 4 H -0.182 1.182 5 H -0.200 1.200 6 H -0.180 1.180 7 C -0.504 4.504 8 H 0.080 0.920 9 C 0.075 3.925 10 C -0.270 4.270 11 C -0.082 4.082 12 C -0.185 4.185 13 C -0.017 4.017 14 C -0.163 4.163 15 C -0.126 4.126 16 C -0.116 4.116 17 C -0.072 4.072 18 C -0.169 4.169 19 C -0.116 4.116 20 C -0.071 4.071 21 N -0.326 5.326 22 C -0.025 4.025 23 C -0.080 4.080 24 C -0.242 4.242 25 H 0.108 0.892 26 H 0.117 0.883 27 H 0.139 0.861 28 H 0.147 0.853 29 H 0.163 0.837 30 H 0.137 0.863 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.117 0.883 34 H 0.054 0.946 35 H 0.179 0.821 36 H 0.069 0.931 37 H 0.114 0.886 38 H 0.148 0.852 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 21.612 1.928 -5.662 22.424 hybrid contribution -0.297 0.774 0.835 1.176 sum 21.314 2.702 -4.827 22.021 Atomic orbital electron populations 1.69695 1.09154 1.31819 1.35695 1.26858 0.95327 1.04230 0.90203 0.85493 0.79533 0.76544 0.79635 1.18185 1.19961 1.18037 1.19542 0.94475 0.95781 1.40590 0.92009 1.17971 0.92688 0.92018 0.89779 1.20826 0.96636 1.05159 1.04423 1.20759 0.92743 0.96991 0.97721 1.18522 0.92759 1.01677 1.05577 1.18901 0.91927 0.95307 0.95577 1.21295 0.93896 0.99411 1.01740 1.21156 0.95136 0.98922 0.97379 1.19879 0.96459 0.96600 0.98667 1.19717 0.92606 0.97211 0.97672 1.21281 0.95677 1.00374 0.99525 1.20609 0.96386 0.97070 0.97554 1.21968 0.93960 0.89796 1.01387 1.60533 1.22451 1.15356 1.34256 1.20726 0.90899 1.00045 0.90794 1.20822 0.94862 0.96963 0.95393 1.20940 0.93982 1.04082 1.05220 0.89237 0.88276 0.86104 0.85327 0.83721 0.86338 0.90265 0.89934 0.88325 0.94595 0.82138 0.93093 0.88563 0.85248 0.87448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.49 13.93 21.84 0.30 -45.19 16 2 C 0.05 2.67 5.40 85.28 0.46 3.13 16 3 Si 0.96 42.88 24.52 68.60 1.68 44.57 16 4 H -0.26 -10.78 6.71 99.48 0.67 -10.11 16 5 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 6 H -0.26 -11.84 6.87 99.48 0.68 -11.15 16 7 C -0.48 -26.68 9.55 23.38 0.22 -26.46 16 8 H 0.06 3.70 8.06 -2.91 -0.02 3.67 16 9 C 0.08 4.04 5.10 -21.27 -0.11 3.93 16 10 C -0.25 -12.15 7.11 22.47 0.16 -11.99 16 11 C -0.06 -2.77 9.36 22.22 0.21 -2.56 16 12 C -0.18 -7.59 5.90 -19.87 -0.12 -7.71 16 13 C -0.02 -0.61 5.88 -20.08 -0.12 -0.72 16 14 C -0.15 -4.42 9.43 22.48 0.21 -4.21 16 15 C -0.11 -2.72 9.63 22.31 0.21 -2.50 16 16 C -0.12 -2.89 5.81 -19.76 -0.11 -3.00 16 17 C -0.07 -1.97 5.77 -19.86 -0.11 -2.08 16 18 C -0.15 -4.85 9.04 22.59 0.20 -4.64 16 19 C -0.08 -1.66 5.94 29.82 0.18 -1.48 16 20 C 0.06 0.93 6.58 86.22 0.57 1.50 16 21 N -0.69 -11.32 6.87 -518.28 -3.56 -14.88 16 22 C 0.10 1.85 6.34 85.60 0.54 2.39 16 23 C -0.06 -2.58 9.36 22.22 0.21 -2.37 16 24 C -0.22 -10.43 9.73 22.47 0.22 -10.21 16 25 H 0.30 14.38 8.29 -92.71 -0.77 13.61 16 26 H 0.10 4.75 4.75 -2.91 -0.01 4.73 16 27 H 0.12 4.52 6.18 -2.91 -0.02 4.50 16 28 H 0.13 3.58 6.20 -2.91 -0.02 3.56 16 29 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 30 H 0.12 3.68 6.18 -2.91 -0.02 3.66 16 31 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.04 0.58 8.05 -2.39 -0.02 0.56 16 35 H 0.36 3.86 8.90 -89.69 -0.80 3.06 16 36 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.10 1.46 8.13 -2.39 -0.02 1.44 16 38 H 0.13 4.44 6.19 -2.91 -0.02 4.42 16 39 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -62.00 311.51 1.46 -60.53 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 0.22 Total: 23.96 kcal Atomic # 6 Polarization: -71.81 SS G_CDS: 2.82 Total: -68.98 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: -3.26 Total: -60.07 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.68 Total: 44.57 kcal Total: -62.00 1.46 -60.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240455493.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.145 kcal (2) G-P(sol) polarization free energy of solvation -61.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds