Wall clock time and date at job start Wed Apr 15 2020 11:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30775 * 1 3 3 Si 1.86799 * 119.99951 * 2 1 4 4 H 1.48501 * 109.47058 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47006 * 299.99363 * 3 2 1 6 6 H 1.48502 * 109.47392 * 59.99489 * 3 2 1 7 7 C 1.40074 * 119.99650 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99340 * 164.43941 * 7 2 1 9 9 C 1.40879 * 120.00350 * 344.44303 * 7 2 1 10 10 C 1.40743 * 120.32947 * 333.42171 * 9 7 2 11 11 C 1.36439 * 119.99078 * 180.02562 * 10 9 7 12 12 C 1.38934 * 120.67819 * 359.72336 * 11 10 9 13 13 C 1.38084 * 120.67537 * 0.55596 * 12 11 10 14 14 C 1.39163 * 119.98451 * 359.44809 * 13 12 11 15 15 C 1.47872 * 120.33866 * 180.25050 * 14 13 12 16 16 C 1.39674 * 120.24596 * 129.99975 * 15 14 13 17 17 C 1.37682 * 119.71067 * 180.09673 * 16 15 14 18 18 C 1.38932 * 120.59058 * 359.97438 * 17 16 15 19 19 C 1.38041 * 119.95433 * 359.82783 * 18 17 16 20 20 C 1.38382 * 119.99891 * 359.97438 * 19 18 17 21 21 C 1.50741 * 121.64407 * 180.33869 * 19 18 17 22 22 C 1.52894 * 109.96165 * 342.92605 * 21 19 18 23 23 N 1.47162 * 108.48444 * 50.48470 * 22 21 19 24 24 C 1.46600 * 110.27425 * 288.68117 * 23 22 21 25 25 H 0.97000 * 119.99736 * 0.02562 * 1 2 3 26 26 H 1.08004 * 120.01279 * 359.97438 * 10 9 7 27 27 H 1.07997 * 119.66197 * 179.97438 * 11 10 9 28 28 H 1.07997 * 119.65830 * 180.28493 * 12 11 10 29 29 H 1.07995 * 120.00674 * 179.71678 * 13 12 11 30 30 H 1.08001 * 120.14282 * 0.11435 * 16 15 14 31 31 H 1.07996 * 119.70162 * 180.02562 * 17 16 15 32 32 H 1.08000 * 119.88287 * 180.13860 * 20 19 18 33 33 H 1.08999 * 109.39101 * 103.07401 * 21 19 18 34 34 H 1.09000 * 109.39156 * 222.87485 * 21 19 18 35 35 H 1.08997 * 109.63793 * 170.18854 * 22 21 19 36 36 H 1.09001 * 109.63434 * 290.58782 * 22 21 19 37 37 H 1.00909 * 110.99464 * 165.24547 * 23 22 21 38 38 H 1.08996 * 109.27078 * 292.31456 * 24 23 22 39 39 H 1.08995 * 109.27054 * 172.84429 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 3.7017 1.3464 0.0006 5 1 1.8831 2.3963 -1.2125 6 1 1.8829 2.3965 1.2124 7 6 2.0081 -1.2131 0.0005 8 1 3.0584 -1.2303 -0.2504 9 6 1.3424 -2.4107 0.3283 10 6 0.2091 -2.3885 1.1627 11 6 -0.4299 -3.5525 1.4760 12 6 0.0224 -4.7667 0.9747 13 6 1.1348 -4.8213 0.1584 14 6 1.8079 -3.6510 -0.1791 15 6 2.9967 -3.6999 -1.0572 16 6 3.0886 -2.8536 -2.1645 17 6 4.1996 -2.9097 -2.9759 18 6 5.2303 -3.8003 -2.7027 19 6 5.1468 -4.6362 -1.6074 20 6 4.0372 -4.5864 -0.7820 21 6 6.2459 -5.6115 -1.2712 22 6 7.1540 -5.8132 -2.4846 23 7 7.5557 -4.4913 -2.9916 24 6 6.4170 -3.8251 -3.6310 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1541 -1.4503 1.5556 27 1 -1.2988 -3.5293 2.1171 28 1 -0.4987 -5.6776 1.2297 29 1 1.4797 -5.7716 -0.2215 30 1 2.2919 -2.1580 -2.3832 31 1 4.2707 -2.2550 -3.8318 32 1 3.9748 -5.2397 0.0757 33 1 6.8338 -5.2218 -0.4401 34 1 5.8068 -6.5677 -0.9868 35 1 8.0391 -6.3769 -2.1901 36 1 6.6143 -6.3574 -3.2596 37 1 8.3336 -4.5699 -3.6295 38 1 6.1505 -4.3624 -4.5411 39 1 6.6954 -2.8026 -3.8861 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240456042.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:49 Heat of formation + Delta-G solvation = 31.929053 kcal Electronic energy + Delta-G solvation = -20872.535071 eV Core-core repulsion = 17936.298718 eV Total energy + Delta-G solvation = -2936.236353 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.132 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.51485 -37.70656 -35.88534 -33.73954 -32.31497 -31.54351 -29.64908 -28.86926 -28.07823 -25.39227 -24.00193 -22.84926 -21.83831 -20.69360 -20.40728 -18.59001 -17.31951 -16.49811 -15.62668 -15.35391 -15.04586 -14.45544 -14.20634 -14.12025 -13.92537 -13.30697 -13.27752 -12.68645 -12.63426 -12.41854 -12.15723 -11.72983 -11.65407 -11.58178 -11.17560 -11.13871 -10.88396 -10.78760 -10.50212 -10.35542 -10.18656 -9.63462 -9.38886 -9.25086 -8.61126 -8.10337 -7.94650 -7.42308 -7.13699 -6.79041 -4.38763 1.89675 2.12276 2.75571 3.02946 3.05806 3.12462 3.20360 3.89976 4.22345 4.46020 4.60153 4.93925 5.07492 5.32187 5.41903 5.51550 5.53426 5.62750 5.65452 5.82750 5.88656 5.98163 6.16228 6.20027 6.25667 6.35206 6.39045 6.58465 6.74012 6.77149 6.89794 7.00839 7.11019 7.17360 7.24610 7.29328 7.39911 7.51294 7.56335 7.71554 7.91034 8.03543 8.07247 8.23446 8.57883 8.82157 8.91399 10.10919 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.016271 B = 0.005974 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.442844 B = 4685.750261 C = 6038.180920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.076 3.924 3 Si 0.903 3.097 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.449 4.449 8 H 0.084 0.916 9 C 0.130 3.870 10 C -0.158 4.158 11 C -0.102 4.102 12 C -0.244 4.244 13 C -0.072 4.072 14 C -0.187 4.187 15 C 0.024 3.976 16 C -0.097 4.097 17 C -0.123 4.123 18 C -0.112 4.112 19 C -0.076 4.076 20 C -0.133 4.133 21 C -0.073 4.073 22 C 0.057 3.943 23 N -0.685 5.685 24 C 0.105 3.895 25 H 0.281 0.719 26 H 0.118 0.882 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.129 0.871 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.033 0.967 37 H 0.340 0.660 38 H 0.035 0.965 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.150 -5.569 -4.954 11.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.478 4.478 8 H 0.102 0.898 9 C 0.127 3.873 10 C -0.178 4.178 11 C -0.121 4.121 12 C -0.263 4.263 13 C -0.090 4.090 14 C -0.189 4.189 15 C 0.024 3.976 16 C -0.115 4.115 17 C -0.142 4.142 18 C -0.112 4.112 19 C -0.076 4.076 20 C -0.151 4.151 21 C -0.110 4.110 22 C -0.073 4.073 23 N -0.315 5.315 24 C -0.024 4.024 25 H 0.092 0.908 26 H 0.136 0.864 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.147 0.853 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.052 0.948 37 H 0.157 0.843 38 H 0.053 0.947 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.866 -5.078 -4.361 11.109 hybrid contribution 0.066 0.361 -0.801 0.881 sum 8.932 -4.717 -5.162 11.343 Atomic orbital electron populations 1.69803 1.07604 1.29281 1.34765 1.25948 0.94695 1.01336 0.92253 0.86315 0.81309 0.80958 0.78648 1.18144 1.19877 1.19656 1.19633 0.97624 0.90634 1.39865 0.89809 1.17539 0.90551 0.91089 0.88115 1.21057 0.98970 0.96931 1.00797 1.20483 0.98567 0.93435 0.99571 1.20272 1.01546 0.96335 1.08150 1.20557 0.95527 0.95563 0.97364 1.18627 1.00062 0.93987 1.06188 1.18768 0.92946 0.92906 0.92951 1.21339 0.97701 0.98600 0.93900 1.20841 0.94311 0.98977 1.00040 1.19325 0.95793 0.98771 0.97300 1.19250 0.95316 0.97674 0.95338 1.21181 0.93445 1.00890 0.99557 1.20474 0.94854 0.97784 0.97894 1.21955 0.98594 0.89824 0.96904 1.60571 1.08369 1.20695 1.41848 1.20683 0.88902 0.99101 0.93730 0.90800 0.86386 0.89517 0.89482 0.89303 0.85311 0.87130 0.86930 0.90463 0.91062 0.90844 0.94848 0.84322 0.94729 0.90134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.81 10.96 55.55 0.61 -19.20 16 2 C 0.08 1.86 5.17 -17.31 -0.09 1.77 16 3 Si 0.90 18.53 29.59 -169.99 -5.03 13.50 16 4 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.45 -11.51 7.13 -37.89 -0.27 -11.78 16 8 H 0.08 2.16 6.63 -52.49 -0.35 1.81 16 9 C 0.13 3.37 5.56 -106.56 -0.59 2.78 16 10 C -0.16 -4.06 8.62 -39.28 -0.34 -4.39 16 11 C -0.10 -2.39 9.96 -39.97 -0.40 -2.78 16 12 C -0.24 -5.47 10.03 -39.38 -0.39 -5.86 16 13 C -0.07 -1.63 9.52 -39.29 -0.37 -2.00 16 14 C -0.19 -4.52 5.53 -104.22 -0.58 -5.10 16 15 C 0.02 0.53 4.92 -104.97 -0.52 0.02 16 16 C -0.10 -2.04 8.01 -39.25 -0.31 -2.36 16 17 C -0.12 -2.22 9.63 -39.53 -0.38 -2.60 16 18 C -0.11 -1.89 5.81 -104.45 -0.61 -2.50 16 19 C -0.08 -1.31 5.77 -104.62 -0.60 -1.92 16 20 C -0.13 -2.59 9.14 -39.08 -0.36 -2.94 16 21 C -0.07 -1.00 5.94 -27.92 -0.17 -1.17 16 22 C 0.06 0.66 6.58 -3.74 -0.02 0.63 16 23 N -0.68 -8.34 6.87 -115.16 -0.79 -9.14 16 24 C 0.10 1.40 6.34 -5.15 -0.03 1.37 16 25 H 0.28 6.41 8.29 -40.82 -0.34 6.08 16 26 H 0.12 3.10 6.23 -52.48 -0.33 2.77 16 27 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 28 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 29 H 0.09 1.81 8.05 -52.49 -0.42 1.39 16 30 H 0.13 2.86 7.31 -52.49 -0.38 2.48 16 31 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 32 H 0.11 2.09 8.05 -52.49 -0.42 1.66 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.03 0.39 8.05 -51.93 -0.42 -0.03 16 37 H 0.34 3.16 8.90 -39.29 -0.35 2.81 16 38 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.08 1.01 8.13 -51.93 -0.42 0.59 16 LS Contribution 318.76 15.07 4.80 4.80 Total: -1.00 -27.44 318.76 -11.63 -39.07 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -5.19 Total: 9.80 kcal Atomic # 6 Polarization: -32.81 SS G_CDS: -6.04 Total: -38.84 kcal Atomic # 7 Polarization: -28.15 SS G_CDS: -0.18 Total: -28.33 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.44 -11.63 -39.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240456042.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.003 kcal (2) G-P(sol) polarization free energy of solvation -27.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds