Wall clock time and date at job start Wed Apr 15 2020 11:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30775 * 1 3 3 Si 1.86799 * 119.99951 * 2 1 4 4 H 1.48501 * 109.47058 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47006 * 299.99363 * 3 2 1 6 6 H 1.48502 * 109.47392 * 59.99489 * 3 2 1 7 7 C 1.40074 * 119.99650 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99340 * 164.43941 * 7 2 1 9 9 C 1.40879 * 120.00350 * 344.44303 * 7 2 1 10 10 C 1.40743 * 120.32947 * 333.42171 * 9 7 2 11 11 C 1.36439 * 119.99078 * 180.02562 * 10 9 7 12 12 C 1.38934 * 120.67819 * 359.72336 * 11 10 9 13 13 C 1.38084 * 120.67537 * 0.55596 * 12 11 10 14 14 C 1.39163 * 119.98451 * 359.44809 * 13 12 11 15 15 C 1.47872 * 120.33866 * 180.25050 * 14 13 12 16 16 C 1.39674 * 120.24596 * 129.99975 * 15 14 13 17 17 C 1.37682 * 119.71067 * 180.09673 * 16 15 14 18 18 C 1.38932 * 120.59058 * 359.97438 * 17 16 15 19 19 C 1.38041 * 119.95433 * 359.82783 * 18 17 16 20 20 C 1.38382 * 119.99891 * 359.97438 * 19 18 17 21 21 C 1.50741 * 121.64407 * 180.33869 * 19 18 17 22 22 C 1.52894 * 109.96165 * 342.92605 * 21 19 18 23 23 N 1.47162 * 108.48444 * 50.48470 * 22 21 19 24 24 C 1.46600 * 110.27425 * 288.68117 * 23 22 21 25 25 H 0.97000 * 119.99736 * 0.02562 * 1 2 3 26 26 H 1.08004 * 120.01279 * 359.97438 * 10 9 7 27 27 H 1.07997 * 119.66197 * 179.97438 * 11 10 9 28 28 H 1.07997 * 119.65830 * 180.28493 * 12 11 10 29 29 H 1.07995 * 120.00674 * 179.71678 * 13 12 11 30 30 H 1.08001 * 120.14282 * 0.11435 * 16 15 14 31 31 H 1.07996 * 119.70162 * 180.02562 * 17 16 15 32 32 H 1.08000 * 119.88287 * 180.13860 * 20 19 18 33 33 H 1.08999 * 109.39101 * 103.07401 * 21 19 18 34 34 H 1.09000 * 109.39156 * 222.87485 * 21 19 18 35 35 H 1.08997 * 109.63793 * 170.18854 * 22 21 19 36 36 H 1.09001 * 109.63434 * 290.58782 * 22 21 19 37 37 H 1.00909 * 110.99464 * 165.24547 * 23 22 21 38 38 H 1.08996 * 109.27078 * 292.31456 * 24 23 22 39 39 H 1.08995 * 109.27054 * 172.84429 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 3.7017 1.3464 0.0006 5 1 1.8831 2.3963 -1.2125 6 1 1.8829 2.3965 1.2124 7 6 2.0081 -1.2131 0.0005 8 1 3.0584 -1.2303 -0.2504 9 6 1.3424 -2.4107 0.3283 10 6 0.2091 -2.3885 1.1627 11 6 -0.4299 -3.5525 1.4760 12 6 0.0224 -4.7667 0.9747 13 6 1.1348 -4.8213 0.1584 14 6 1.8079 -3.6510 -0.1791 15 6 2.9967 -3.6999 -1.0572 16 6 3.0886 -2.8536 -2.1645 17 6 4.1996 -2.9097 -2.9759 18 6 5.2303 -3.8003 -2.7027 19 6 5.1468 -4.6362 -1.6074 20 6 4.0372 -4.5864 -0.7820 21 6 6.2459 -5.6115 -1.2712 22 6 7.1540 -5.8132 -2.4846 23 7 7.5557 -4.4913 -2.9916 24 6 6.4170 -3.8251 -3.6310 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1541 -1.4503 1.5556 27 1 -1.2988 -3.5293 2.1171 28 1 -0.4987 -5.6776 1.2297 29 1 1.4797 -5.7716 -0.2215 30 1 2.2919 -2.1580 -2.3832 31 1 4.2707 -2.2550 -3.8318 32 1 3.9748 -5.2397 0.0757 33 1 6.8338 -5.2218 -0.4401 34 1 5.8068 -6.5677 -0.9868 35 1 8.0391 -6.3769 -2.1901 36 1 6.6143 -6.3574 -3.2596 37 1 8.3336 -4.5699 -3.6295 38 1 6.1505 -4.3624 -4.5411 39 1 6.6954 -2.8026 -3.8861 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240456042.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:48 Heat of formation + Delta-G solvation = 18.221007 kcal Electronic energy + Delta-G solvation = -20873.129496 eV Core-core repulsion = 17936.298718 eV Total energy + Delta-G solvation = -2936.830778 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.132 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.89069 -39.37454 -37.17867 -35.58845 -33.57425 -33.06758 -31.48000 -30.25454 -29.57689 -27.21266 -25.31865 -24.08421 -23.33366 -22.44084 -21.99567 -19.99906 -19.17899 -17.67525 -17.25977 -16.82643 -16.43038 -15.94923 -15.54801 -15.50994 -15.28280 -14.90400 -14.82918 -14.40670 -13.99046 -13.76161 -13.57845 -13.39186 -13.13591 -12.94622 -12.81795 -12.61661 -12.55834 -12.23739 -12.13750 -11.79944 -11.54583 -11.40542 -11.11301 -11.07795 -9.84855 -9.46830 -9.38844 -9.28855 -8.84821 -8.58874 -6.30450 0.34352 0.63820 0.99389 1.23553 1.35234 1.48286 1.49855 2.18280 2.72946 2.95923 3.34357 3.73178 3.85306 3.92209 4.13892 4.22554 4.35577 4.44416 4.48088 4.53270 4.59239 4.61242 4.67921 4.73938 4.88910 4.92044 5.00844 5.12358 5.14092 5.24563 5.29183 5.35535 5.45609 5.58592 5.72869 5.75964 5.88637 6.01640 6.04224 6.16449 6.17605 6.29395 6.38348 6.60044 6.68904 6.93137 7.03185 8.30642 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.016271 B = 0.005974 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.442844 B = 4685.750261 C = 6038.180920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.039 3.961 3 Si 0.970 3.030 4 H -0.263 1.263 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.471 4.471 8 H 0.071 0.929 9 C 0.097 3.903 10 C -0.185 4.185 11 C -0.109 4.109 12 C -0.241 4.241 13 C -0.082 4.082 14 C -0.194 4.194 15 C -0.008 4.008 16 C -0.117 4.117 17 C -0.123 4.123 18 C -0.109 4.109 19 C -0.079 4.079 20 C -0.138 4.138 21 C -0.074 4.074 22 C 0.059 3.941 23 N -0.693 5.693 24 C 0.107 3.893 25 H 0.288 0.712 26 H 0.102 0.898 27 H 0.110 0.890 28 H 0.119 0.881 29 H 0.112 0.888 30 H 0.102 0.898 31 H 0.135 0.865 32 H 0.117 0.883 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.037 0.963 37 H 0.359 0.641 38 H 0.053 0.947 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.430 -6.743 -5.976 14.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.176 4.176 3 Si 0.792 3.208 4 H -0.187 1.187 5 H -0.188 1.188 6 H -0.187 1.187 7 C -0.500 4.500 8 H 0.089 0.911 9 C 0.095 3.905 10 C -0.205 4.205 11 C -0.127 4.127 12 C -0.260 4.260 13 C -0.100 4.100 14 C -0.195 4.195 15 C -0.008 4.008 16 C -0.136 4.136 17 C -0.141 4.141 18 C -0.109 4.109 19 C -0.079 4.079 20 C -0.157 4.157 21 C -0.112 4.112 22 C -0.070 4.070 23 N -0.326 5.326 24 C -0.022 4.022 25 H 0.099 0.901 26 H 0.120 0.880 27 H 0.128 0.872 28 H 0.137 0.863 29 H 0.130 0.870 30 H 0.120 0.880 31 H 0.153 0.847 32 H 0.135 0.865 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.120 0.880 36 H 0.056 0.944 37 H 0.179 0.821 38 H 0.071 0.929 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 11.151 -6.268 -5.390 13.881 hybrid contribution -0.595 0.578 -0.524 0.981 sum 10.555 -5.690 -5.914 13.370 Atomic orbital electron populations 1.69847 1.08799 1.30436 1.35619 1.26666 0.95390 1.04089 0.91496 0.85323 0.79437 0.76923 0.79159 1.18678 1.18786 1.18747 1.19632 0.97145 0.91679 1.41564 0.91056 1.17900 0.91370 0.92273 0.88956 1.21049 1.00053 0.97245 1.02129 1.20768 0.99055 0.93162 0.99698 1.20659 1.01208 0.97100 1.07041 1.20888 0.95554 0.96131 0.97405 1.19029 1.00811 0.93895 1.05811 1.18808 0.93436 0.94908 0.93607 1.21195 0.98486 0.98762 0.95109 1.21098 0.93497 0.99448 1.00092 1.19824 0.96531 0.97213 0.97368 1.19716 0.95440 0.98058 0.94679 1.21292 0.93708 1.00436 1.00227 1.20581 0.94102 0.97344 0.99147 1.21985 0.99309 0.89849 0.95853 1.60514 1.08452 1.21058 1.42554 1.20682 0.87939 1.00391 0.93230 0.90105 0.88001 0.87214 0.86318 0.87006 0.88019 0.84712 0.86492 0.90490 0.89587 0.88005 0.94430 0.82095 0.92894 0.89045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.00 10.96 21.85 0.24 -42.76 16 2 C 0.04 1.97 5.17 85.30 0.44 2.41 16 3 Si 0.97 39.12 29.59 68.60 2.03 41.15 16 4 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 5 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 6 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 7 C -0.47 -25.54 7.13 23.36 0.17 -25.37 16 8 H 0.07 3.91 6.63 -2.91 -0.02 3.89 16 9 C 0.10 5.33 5.56 -21.12 -0.12 5.22 16 10 C -0.19 -9.93 8.62 22.46 0.19 -9.74 16 11 C -0.11 -5.14 9.96 22.02 0.22 -4.92 16 12 C -0.24 -10.66 10.03 22.40 0.22 -10.44 16 13 C -0.08 -3.72 9.52 22.46 0.21 -3.51 16 14 C -0.19 -9.72 5.53 -19.61 -0.11 -9.83 16 15 C -0.01 -0.34 4.92 -20.09 -0.10 -0.44 16 16 C -0.12 -5.11 8.01 22.49 0.18 -4.93 16 17 C -0.12 -4.38 9.63 22.30 0.21 -4.16 16 18 C -0.11 -3.49 5.81 -19.75 -0.11 -3.61 16 19 C -0.08 -2.61 5.77 -19.86 -0.11 -2.73 16 20 C -0.14 -5.39 9.14 22.59 0.21 -5.19 16 21 C -0.07 -1.84 5.94 29.83 0.18 -1.66 16 22 C 0.06 1.13 6.58 86.22 0.57 1.70 16 23 N -0.69 -14.12 6.87 -518.26 -3.56 -17.68 16 24 C 0.11 2.48 6.34 85.61 0.54 3.03 16 25 H 0.29 13.62 8.29 -92.71 -0.77 12.85 16 26 H 0.10 5.67 6.23 -2.91 -0.02 5.65 16 27 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 28 H 0.12 4.44 8.06 -2.91 -0.02 4.41 16 29 H 0.11 4.47 8.05 -2.91 -0.02 4.45 16 30 H 0.10 4.87 7.31 -2.91 -0.02 4.85 16 31 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 32 H 0.12 4.31 8.05 -2.91 -0.02 4.29 16 33 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.04 0.71 8.05 -2.39 -0.02 0.69 16 37 H 0.36 5.10 8.90 -89.69 -0.80 4.30 16 38 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.09 1.97 8.13 -2.39 -0.02 1.95 16 Total: -1.00 -61.93 318.76 1.76 -60.17 By element: Atomic # 1 Polarization: 33.02 SS G_CDS: 0.26 Total: 33.28 kcal Atomic # 6 Polarization: -76.95 SS G_CDS: 2.79 Total: -74.15 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: -3.32 Total: -60.44 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Total: -61.93 1.76 -60.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240456042.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.390 kcal (2) G-P(sol) polarization free energy of solvation -61.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds