Wall clock time and date at job start Wed Apr 15 2020 11:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86792 * 120.00272 * 2 1 4 4 H 1.48510 * 109.47310 * 240.00136 * 3 2 1 5 5 H 1.48501 * 109.46985 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47352 * 119.99969 * 3 2 1 7 7 C 1.39968 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99744 * 197.96981 * 7 2 1 9 9 C 1.40986 * 119.99694 * 17.97925 * 7 2 1 10 10 C 1.40957 * 120.11029 * 24.71138 * 9 7 2 11 11 C 1.36204 * 119.88125 * 180.02562 * 10 9 7 12 12 C 1.40026 * 120.11423 * 359.97438 * 11 10 9 13 13 C 1.47837 * 119.88940 * 180.02562 * 12 11 10 14 14 C 1.39769 * 120.06870 * 359.97438 * 13 12 11 15 15 C 1.37596 * 119.75765 * 180.12127 * 14 13 12 16 16 C 1.39379 * 120.23546 * 0.02562 * 15 14 13 17 17 C 1.38915 * 120.24072 * 359.81674 * 16 15 14 18 18 C 1.38100 * 119.70775 * 0.22543 * 17 16 15 19 19 C 1.50629 * 121.48041 * 180.35388 * 17 16 15 20 20 C 1.52853 * 110.47015 * 339.32954 * 19 17 16 21 21 C 1.53428 * 108.83236 * 51.27910 * 20 19 17 22 22 N 1.39609 * 118.96979 * 179.56462 * 16 15 14 23 23 C 1.40024 * 120.22229 * 0.28707 * 12 11 10 24 24 C 1.36199 * 120.11405 * 359.45046 * 23 12 11 25 25 H 0.96998 * 119.99883 * 0.02562 * 1 2 3 26 26 H 1.07993 * 120.06435 * 359.97438 * 10 9 7 27 27 H 1.07993 * 119.94461 * 179.97438 * 11 10 9 28 28 H 1.07993 * 120.12012 * 0.10160 * 14 13 12 29 29 H 1.07998 * 119.87912 * 179.74232 * 15 14 13 30 30 H 1.07997 * 119.90199 * 179.87062 * 18 17 16 31 31 H 1.08993 * 109.30447 * 99.63437 * 19 17 16 32 32 H 1.09001 * 109.30587 * 219.03063 * 19 17 16 33 33 H 1.09008 * 109.57470 * 171.07475 * 20 19 17 34 34 H 1.08995 * 109.58600 * 291.33832 * 20 19 17 35 35 H 1.08996 * 109.79540 * 56.35192 * 21 20 19 36 36 H 1.08999 * 109.79453 * 177.20374 * 21 20 19 37 37 H 0.97000 * 120.51163 * 346.51413 * 22 16 15 38 38 H 1.07998 * 119.94127 * 179.73156 * 23 12 11 39 39 H 1.08004 * 120.05823 * 180.24614 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.0961 1.6963 -1.2126 5 1 1.2773 2.7464 -0.0006 6 1 3.0961 1.6963 1.2124 7 6 2.0081 -1.2122 0.0005 8 1 3.0485 -1.2349 0.2891 9 6 1.3547 -2.4034 -0.3758 10 6 0.2274 -2.3551 -1.2207 11 6 -0.4006 -3.5088 -1.5809 12 6 0.0721 -4.7413 -1.1139 13 6 -0.6130 -5.9906 -1.5085 14 6 -1.7310 -5.9417 -2.3459 15 6 -2.3652 -7.1081 -2.7071 16 6 -1.8968 -8.3352 -2.2406 17 6 -0.7841 -8.3896 -1.4108 18 6 -0.1452 -7.2212 -1.0452 19 6 -0.2495 -9.7008 -0.8970 20 6 -1.3272 -10.7823 -0.9683 21 6 -1.9187 -10.7995 -2.3839 22 7 -2.5660 -9.5014 -2.6163 23 6 1.1883 -4.7943 -0.2701 24 6 1.8265 -3.6467 0.0917 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1383 -1.4050 -1.5811 27 1 -1.2646 -3.4729 -2.2278 28 1 -2.0959 -4.9919 -2.7077 29 1 -3.2318 -7.0723 -3.3506 30 1 0.7189 -7.2598 -0.3985 31 1 0.6051 -10.0034 -1.5021 32 1 0.0705 -9.5788 0.1378 33 1 -0.8853 -11.7535 -0.7453 34 1 -2.1126 -10.5637 -0.2448 35 1 -1.1240 -10.9517 -3.1141 36 1 -2.6550 -11.5990 -2.4665 37 1 -3.4448 -9.4554 -3.0241 38 1 1.5464 -5.7470 0.0909 39 1 2.6897 -3.6889 0.7394 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241835138.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:52 Heat of formation + Delta-G solvation = 30.491812 kcal Electronic energy + Delta-G solvation = -20175.966235 eV Core-core repulsion = 17239.667558 eV Total energy + Delta-G solvation = -2936.298676 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.132 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.66775 -37.72161 -35.89796 -33.74936 -33.10763 -30.98983 -29.93877 -29.24643 -28.21155 -25.46148 -24.17907 -22.77485 -22.37737 -20.66721 -20.31132 -18.79226 -17.54178 -16.96151 -15.95711 -15.67848 -15.15315 -14.55532 -14.26869 -13.81036 -13.59042 -13.33890 -13.03379 -13.00694 -12.93274 -12.55306 -12.32492 -11.98991 -11.79839 -11.44304 -11.31467 -11.11663 -10.96844 -10.83923 -10.60172 -10.41890 -10.34853 -9.68987 -9.65206 -9.29490 -9.12315 -8.24800 -7.71886 -7.53906 -6.88222 -6.52292 -4.33912 1.83635 1.93960 2.85596 3.02249 3.05075 3.14272 3.26897 3.66548 3.86216 4.31373 4.74397 4.77816 4.92778 5.01512 5.32258 5.39834 5.48941 5.61094 5.70784 5.73722 5.83509 5.89655 5.97780 6.03621 6.17057 6.25787 6.29706 6.40026 6.64609 6.70040 6.87556 6.98260 7.03278 7.11647 7.24918 7.33367 7.45216 7.60533 7.69117 7.92047 8.01099 8.02433 8.17535 8.23834 8.57417 8.80596 8.93353 10.07428 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.046741 B = 0.003304 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.896432 B = 8472.359129 C = 8954.880722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.453 4.453 8 H 0.080 0.920 9 C 0.116 3.884 10 C -0.170 4.170 11 C -0.081 4.081 12 C -0.191 4.191 13 C -0.025 4.025 14 C -0.101 4.101 15 C -0.178 4.178 16 C 0.177 3.823 17 C -0.145 4.145 18 C -0.102 4.102 19 C -0.069 4.069 20 C -0.137 4.137 21 C 0.128 3.872 22 N -0.760 5.760 23 C -0.070 4.070 24 C -0.229 4.229 25 H 0.283 0.717 26 H 0.117 0.883 27 H 0.091 0.909 28 H 0.119 0.881 29 H 0.110 0.890 30 H 0.117 0.883 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.395 0.605 38 H 0.091 0.909 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.808 -14.136 -3.499 15.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.481 4.481 8 H 0.098 0.902 9 C 0.113 3.887 10 C -0.190 4.190 11 C -0.100 4.100 12 C -0.192 4.192 13 C -0.027 4.027 14 C -0.120 4.120 15 C -0.200 4.200 16 C 0.077 3.923 17 C -0.149 4.149 18 C -0.120 4.120 19 C -0.106 4.106 20 C -0.175 4.175 21 C 0.003 3.997 22 N -0.394 5.394 23 C -0.088 4.088 24 C -0.249 4.249 25 H 0.094 0.906 26 H 0.135 0.865 27 H 0.109 0.891 28 H 0.137 0.863 29 H 0.128 0.872 30 H 0.135 0.865 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.229 0.771 38 H 0.109 0.891 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.898 -14.114 -3.428 15.039 hybrid contribution -0.069 0.855 -0.077 0.861 sum -3.967 -13.259 -3.505 14.277 Atomic orbital electron populations 1.69829 1.07695 1.29644 1.33526 1.25990 0.94765 1.01546 0.92183 0.86329 0.80178 0.79938 0.80117 1.18679 1.20223 1.18877 1.19616 0.98287 0.91408 1.38794 0.90213 1.17696 0.90903 0.92026 0.88035 1.20981 0.99649 0.96936 1.01405 1.20523 0.98108 0.92446 0.98898 1.18072 1.01179 0.90919 1.09008 1.18769 0.94648 0.92746 0.96491 1.20972 0.95690 0.97171 0.98124 1.20486 1.02980 0.91436 1.05144 1.17430 0.93471 0.86111 0.95275 1.19120 0.98657 0.95047 1.02066 1.20915 0.99698 0.90918 1.00514 1.20251 0.97414 0.91969 1.01010 1.21866 0.99205 0.98933 0.97499 1.21387 0.96971 0.85339 0.96026 1.44379 1.20905 1.02952 1.71132 1.20376 0.95051 0.96554 0.96867 1.20663 1.04071 0.92972 1.07182 0.90559 0.86486 0.89120 0.86318 0.87186 0.86506 0.91565 0.91092 0.91123 0.91430 0.92967 0.91040 0.77070 0.89133 0.88929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.89 10.96 55.55 0.61 -19.28 16 2 C 0.07 1.83 5.13 -17.33 -0.09 1.75 16 3 Si 0.91 18.24 29.60 -169.99 -5.03 13.21 16 4 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.45 -11.83 9.03 -37.89 -0.34 -12.17 16 8 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 9 C 0.12 3.08 5.57 -106.80 -0.60 2.49 16 10 C -0.17 -4.43 8.63 -39.28 -0.34 -4.77 16 11 C -0.08 -1.94 9.36 -39.64 -0.37 -2.31 16 12 C -0.19 -4.37 5.90 -104.63 -0.62 -4.99 16 13 C -0.02 -0.50 5.88 -104.90 -0.62 -1.12 16 14 C -0.10 -1.85 9.42 -39.24 -0.37 -2.22 16 15 C -0.18 -2.85 9.85 -39.39 -0.39 -3.24 16 16 C 0.18 2.71 6.48 -83.64 -0.54 2.17 16 17 C -0.14 -2.31 5.76 -104.46 -0.60 -2.91 16 18 C -0.10 -1.85 9.03 -39.13 -0.35 -2.20 16 19 C -0.07 -0.86 5.78 -27.99 -0.16 -1.02 16 20 C -0.14 -1.37 6.11 -26.59 -0.16 -1.54 16 21 C 0.13 1.24 7.11 -3.60 -0.03 1.21 16 22 N -0.76 -9.02 5.78 -58.03 -0.34 -9.36 16 23 C -0.07 -1.61 9.36 -39.65 -0.37 -1.98 16 24 C -0.23 -5.65 9.73 -39.29 -0.38 -6.03 16 25 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 26 H 0.12 3.11 6.16 -52.49 -0.32 2.78 16 27 H 0.09 1.94 6.17 -52.49 -0.32 1.62 16 28 H 0.12 2.09 6.18 -52.49 -0.32 1.77 16 29 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.12 2.01 6.16 -52.49 -0.32 1.69 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 33 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.40 3.90 8.85 -40.82 -0.36 3.54 16 38 H 0.09 1.82 6.16 -52.49 -0.32 1.50 16 39 H 0.09 2.13 8.06 -52.48 -0.42 1.71 16 LS Contribution 316.61 15.07 4.77 4.77 Total: -1.00 -28.13 316.61 -11.22 -39.36 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -4.91 Total: 10.19 kcal Atomic # 6 Polarization: -32.55 SS G_CDS: -6.33 Total: -38.88 kcal Atomic # 7 Polarization: -28.91 SS G_CDS: 0.27 Total: -28.64 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.21 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.13 -11.22 -39.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241835138.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.849 kcal (2) G-P(sol) polarization free energy of solvation -28.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds