Wall clock time and date at job start Wed Apr 15 2020 11:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86792 * 120.00272 * 2 1 4 4 H 1.48510 * 109.47310 * 240.00136 * 3 2 1 5 5 H 1.48501 * 109.46985 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47352 * 119.99969 * 3 2 1 7 7 C 1.39968 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99744 * 197.96981 * 7 2 1 9 9 C 1.40986 * 119.99694 * 17.97925 * 7 2 1 10 10 C 1.40957 * 120.11029 * 24.71138 * 9 7 2 11 11 C 1.36204 * 119.88125 * 180.02562 * 10 9 7 12 12 C 1.40026 * 120.11423 * 359.97438 * 11 10 9 13 13 C 1.47837 * 119.88940 * 180.02562 * 12 11 10 14 14 C 1.39769 * 120.06870 * 359.97438 * 13 12 11 15 15 C 1.37596 * 119.75765 * 180.12127 * 14 13 12 16 16 C 1.39379 * 120.23546 * 0.02562 * 15 14 13 17 17 C 1.38915 * 120.24072 * 359.81674 * 16 15 14 18 18 C 1.38100 * 119.70775 * 0.22543 * 17 16 15 19 19 C 1.50629 * 121.48041 * 180.35388 * 17 16 15 20 20 C 1.52853 * 110.47015 * 339.32954 * 19 17 16 21 21 C 1.53428 * 108.83236 * 51.27910 * 20 19 17 22 22 N 1.39609 * 118.96979 * 179.56462 * 16 15 14 23 23 C 1.40024 * 120.22229 * 0.28707 * 12 11 10 24 24 C 1.36199 * 120.11405 * 359.45046 * 23 12 11 25 25 H 0.96998 * 119.99883 * 0.02562 * 1 2 3 26 26 H 1.07993 * 120.06435 * 359.97438 * 10 9 7 27 27 H 1.07993 * 119.94461 * 179.97438 * 11 10 9 28 28 H 1.07993 * 120.12012 * 0.10160 * 14 13 12 29 29 H 1.07998 * 119.87912 * 179.74232 * 15 14 13 30 30 H 1.07997 * 119.90199 * 179.87062 * 18 17 16 31 31 H 1.08993 * 109.30447 * 99.63437 * 19 17 16 32 32 H 1.09001 * 109.30587 * 219.03063 * 19 17 16 33 33 H 1.09008 * 109.57470 * 171.07475 * 20 19 17 34 34 H 1.08995 * 109.58600 * 291.33832 * 20 19 17 35 35 H 1.08996 * 109.79540 * 56.35192 * 21 20 19 36 36 H 1.08999 * 109.79453 * 177.20374 * 21 20 19 37 37 H 0.97000 * 120.51163 * 346.51413 * 22 16 15 38 38 H 1.07998 * 119.94127 * 179.73156 * 23 12 11 39 39 H 1.08004 * 120.05823 * 180.24614 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.0961 1.6963 -1.2126 5 1 1.2773 2.7464 -0.0006 6 1 3.0961 1.6963 1.2124 7 6 2.0081 -1.2122 0.0005 8 1 3.0485 -1.2349 0.2891 9 6 1.3547 -2.4034 -0.3758 10 6 0.2274 -2.3551 -1.2207 11 6 -0.4006 -3.5088 -1.5809 12 6 0.0721 -4.7413 -1.1139 13 6 -0.6130 -5.9906 -1.5085 14 6 -1.7310 -5.9417 -2.3459 15 6 -2.3652 -7.1081 -2.7071 16 6 -1.8968 -8.3352 -2.2406 17 6 -0.7841 -8.3896 -1.4108 18 6 -0.1452 -7.2212 -1.0452 19 6 -0.2495 -9.7008 -0.8970 20 6 -1.3272 -10.7823 -0.9683 21 6 -1.9187 -10.7995 -2.3839 22 7 -2.5660 -9.5014 -2.6163 23 6 1.1883 -4.7943 -0.2701 24 6 1.8265 -3.6467 0.0917 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1383 -1.4050 -1.5811 27 1 -1.2646 -3.4729 -2.2278 28 1 -2.0959 -4.9919 -2.7077 29 1 -3.2318 -7.0723 -3.3506 30 1 0.7189 -7.2598 -0.3985 31 1 0.6051 -10.0034 -1.5021 32 1 0.0705 -9.5788 0.1378 33 1 -0.8853 -11.7535 -0.7453 34 1 -2.1126 -10.5637 -0.2448 35 1 -1.1240 -10.9517 -3.1141 36 1 -2.6550 -11.5990 -2.4665 37 1 -3.4448 -9.4554 -3.0241 38 1 1.5464 -5.7470 0.0909 39 1 2.6897 -3.6889 0.7394 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241835138.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:51 Heat of formation + Delta-G solvation = 17.198730 kcal Electronic energy + Delta-G solvation = -20176.542666 eV Core-core repulsion = 17239.667558 eV Total energy + Delta-G solvation = -2936.875108 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.132 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.91262 -39.42289 -37.20010 -35.49138 -34.21829 -32.55005 -31.58148 -30.70241 -29.75077 -27.02060 -25.40369 -24.03470 -23.83415 -22.21728 -21.99684 -20.05016 -19.33689 -18.22150 -17.45159 -16.91938 -16.73810 -15.84449 -15.63220 -15.22882 -14.96005 -14.64013 -14.45003 -14.40706 -14.17581 -13.87978 -13.78202 -13.67795 -13.38591 -12.91104 -12.83766 -12.76556 -12.31265 -12.13855 -12.03333 -11.70453 -11.60071 -11.38892 -11.17241 -11.00940 -10.77085 -9.55654 -9.47063 -9.31841 -8.69288 -7.94691 -6.25867 0.31423 0.61591 1.18479 1.25689 1.38075 1.50010 1.63710 2.19280 2.66788 2.70917 3.15580 3.82278 3.85416 3.99558 4.11442 4.18118 4.26350 4.36836 4.47280 4.56158 4.61436 4.66095 4.77915 4.81927 4.92939 5.01730 5.08132 5.11081 5.15873 5.26559 5.31848 5.37422 5.40503 5.48405 5.62000 5.69691 5.84004 5.98184 6.09503 6.12720 6.34647 6.36882 6.57160 6.66390 6.89386 7.01908 7.03277 8.28373 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.046741 B = 0.003304 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.896432 B = 8472.359129 C = 8954.880722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.034 3.966 3 Si 0.985 3.015 4 H -0.260 1.260 5 H -0.266 1.266 6 H -0.258 1.258 7 C -0.493 4.493 8 H 0.079 0.921 9 C 0.082 3.918 10 C -0.191 4.191 11 C -0.093 4.093 12 C -0.180 4.180 13 C -0.069 4.069 14 C -0.106 4.106 15 C -0.185 4.185 16 C 0.190 3.810 17 C -0.156 4.156 18 C -0.102 4.102 19 C -0.072 4.072 20 C -0.133 4.133 21 C 0.121 3.879 22 N -0.751 5.751 23 C -0.080 4.080 24 C -0.243 4.243 25 H 0.290 0.710 26 H 0.102 0.898 27 H 0.108 0.892 28 H 0.117 0.883 29 H 0.137 0.863 30 H 0.119 0.881 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.105 0.895 37 H 0.407 0.593 38 H 0.117 0.883 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.628 -17.041 -4.124 18.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.182 4.182 3 Si 0.806 3.194 4 H -0.184 1.184 5 H -0.190 1.190 6 H -0.182 1.182 7 C -0.522 4.522 8 H 0.097 0.903 9 C 0.079 3.921 10 C -0.210 4.210 11 C -0.112 4.112 12 C -0.181 4.181 13 C -0.071 4.071 14 C -0.125 4.125 15 C -0.207 4.207 16 C 0.088 3.912 17 C -0.161 4.161 18 C -0.121 4.121 19 C -0.110 4.110 20 C -0.171 4.171 21 C -0.003 4.003 22 N -0.384 5.384 23 C -0.098 4.098 24 C -0.263 4.263 25 H 0.101 0.899 26 H 0.120 0.880 27 H 0.126 0.874 28 H 0.135 0.865 29 H 0.155 0.845 30 H 0.137 0.863 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.118 0.882 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.123 0.877 37 H 0.243 0.757 38 H 0.135 0.865 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.743 -17.076 -4.064 18.183 hybrid contribution 0.021 1.353 0.027 1.354 sum -4.722 -15.723 -4.037 16.906 Atomic orbital electron populations 1.69883 1.09162 1.30894 1.34455 1.26850 0.95511 1.04736 0.91096 0.85205 0.78781 0.75296 0.80163 1.18438 1.19032 1.18175 1.19841 0.98579 0.92594 1.41172 0.90296 1.18034 0.91805 0.93150 0.89078 1.20960 1.00523 0.97083 1.02466 1.20756 0.98669 0.92394 0.99352 1.18467 1.00510 0.91952 1.07206 1.18735 0.96540 0.92236 0.99574 1.21068 0.95380 0.98235 0.97815 1.20740 1.03650 0.90911 1.05409 1.17640 0.92762 0.87215 0.93620 1.19507 0.98716 0.95921 1.01938 1.21043 0.99780 0.91064 1.00185 1.20353 0.98519 0.90925 1.01160 1.21874 0.98285 0.99402 0.97537 1.21664 0.98028 0.84799 0.95790 1.44557 1.21193 1.02781 1.69826 1.20669 0.95043 0.97166 0.96888 1.20874 1.04659 0.93162 1.07568 0.89892 0.87986 0.87450 0.86520 0.84520 0.86272 0.90634 0.90800 0.88196 0.92175 0.92595 0.87671 0.75666 0.86476 0.88177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.49 10.96 21.83 0.24 -43.25 16 2 C 0.03 1.73 5.13 85.26 0.44 2.17 16 3 Si 0.99 38.37 29.60 68.60 2.03 40.40 16 4 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 5 H -0.27 -9.74 7.11 99.48 0.71 -9.04 16 6 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 7 C -0.49 -27.15 9.03 23.36 0.21 -26.94 16 8 H 0.08 4.15 7.91 -2.91 -0.02 4.13 16 9 C 0.08 4.59 5.57 -21.27 -0.12 4.47 16 10 C -0.19 -10.51 8.63 22.46 0.19 -10.31 16 11 C -0.09 -4.64 9.36 22.23 0.21 -4.43 16 12 C -0.18 -8.47 5.90 -19.87 -0.12 -8.58 16 13 C -0.07 -2.78 5.88 -20.04 -0.12 -2.90 16 14 C -0.11 -3.83 9.42 22.49 0.21 -3.62 16 15 C -0.18 -5.49 9.85 22.39 0.22 -5.27 16 16 C 0.19 5.26 6.48 38.34 0.25 5.51 16 17 C -0.16 -4.61 5.76 -19.76 -0.11 -4.73 16 18 C -0.10 -3.60 9.03 22.56 0.20 -3.40 16 19 C -0.07 -1.57 5.78 29.78 0.17 -1.40 16 20 C -0.13 -2.09 6.11 30.69 0.19 -1.90 16 21 C 0.12 1.75 7.11 86.45 0.61 2.36 16 22 N -0.75 -14.65 5.78 -337.49 -1.95 -16.60 16 23 C -0.08 -3.74 9.36 22.23 0.21 -3.53 16 24 C -0.24 -12.50 9.73 22.46 0.22 -12.28 16 25 H 0.29 13.88 8.30 -92.71 -0.77 13.11 16 26 H 0.10 5.79 6.16 -2.91 -0.02 5.78 16 27 H 0.11 4.79 6.17 -2.91 -0.02 4.77 16 28 H 0.12 4.12 6.18 -2.91 -0.02 4.10 16 29 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 30 H 0.12 4.01 6.16 -2.91 -0.02 3.99 16 31 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.07 1.56 8.12 -2.39 -0.02 1.54 16 33 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.41 6.21 8.85 -92.71 -0.82 5.39 16 38 H 0.12 4.72 6.16 -2.91 -0.02 4.71 16 39 H 0.10 4.81 8.06 -2.91 -0.02 4.79 16 Total: -1.00 -64.11 316.61 3.44 -60.67 By element: Atomic # 1 Polarization: 33.31 SS G_CDS: 0.25 Total: 33.56 kcal Atomic # 6 Polarization: -77.65 SS G_CDS: 2.87 Total: -74.78 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -1.71 Total: -59.85 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 2.03 Total: 40.40 kcal Total: -64.11 3.44 -60.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241835138.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.866 kcal (2) G-P(sol) polarization free energy of solvation -64.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds