Wall clock time and date at job start Wed Apr 15 2020 11:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30803 * 1 3 3 Si 1.86803 * 119.99540 * 2 1 4 4 H 1.48504 * 109.46850 * 239.99673 * 3 2 1 5 5 H 1.48496 * 109.47406 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47150 * 119.99755 * 3 2 1 7 7 C 1.40024 * 120.00383 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00284 * 164.28659 * 7 2 1 9 9 C 1.40833 * 119.99935 * 344.27901 * 7 2 1 10 10 C 1.40776 * 120.33593 * 333.81591 * 9 7 2 11 11 C 1.36389 * 119.98882 * 180.02562 * 10 9 7 12 12 C 1.38982 * 120.70749 * 359.74497 * 11 10 9 13 13 C 1.37997 * 120.68981 * 0.51688 * 12 11 10 14 14 C 1.39282 * 119.97223 * 359.48384 * 13 12 11 15 15 C 1.47717 * 120.34321 * 180.27697 * 14 13 12 16 16 C 1.39814 * 120.08088 * 130.00392 * 15 14 13 17 17 C 1.37579 * 119.76158 * 180.02562 * 16 15 14 18 18 C 1.39390 * 120.23651 * 0.02562 * 17 16 15 19 19 C 1.38919 * 120.25364 * 359.83245 * 18 17 16 20 20 C 1.38097 * 119.70839 * 359.96923 * 19 18 17 21 21 C 1.50622 * 121.47911 * 180.47321 * 19 18 17 22 22 C 1.52852 * 110.47936 * 339.28561 * 21 19 18 23 23 C 1.53427 * 108.83466 * 51.27159 * 22 21 19 24 24 N 1.39619 * 118.96435 * 179.60662 * 18 17 16 25 25 H 0.97001 * 120.00699 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.00278 * 359.97438 * 10 9 7 27 27 H 1.07998 * 119.64717 * 179.97438 * 11 10 9 28 28 H 1.07999 * 119.65410 * 180.25732 * 12 11 10 29 29 H 1.07997 * 120.01990 * 179.76909 * 13 12 11 30 30 H 1.07997 * 120.11900 * 0.06726 * 16 15 14 31 31 H 1.08001 * 119.87911 * 179.97438 * 17 16 15 32 32 H 1.07996 * 119.90136 * 180.08834 * 20 19 18 33 33 H 1.09001 * 109.30504 * 99.59077 * 21 19 18 34 34 H 1.09001 * 109.30306 * 218.97592 * 21 19 18 35 35 H 1.08997 * 109.57953 * 171.07622 * 22 21 19 36 36 H 1.08998 * 109.57533 * 291.34063 * 22 21 19 37 37 H 1.09000 * 109.79186 * 56.37124 * 23 22 21 38 38 H 1.09002 * 109.79241 * 177.20772 * 23 22 21 39 39 H 0.97004 * 120.51153 * 346.44144 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 3.0957 1.6965 -1.2125 5 1 1.2769 2.7465 -0.0006 6 1 3.0956 1.6966 1.2125 7 6 2.0082 -1.2126 0.0005 8 1 3.0579 -1.2302 -0.2527 9 6 1.3436 -2.4093 0.3315 10 6 0.2073 -2.3853 1.1622 11 6 -0.4305 -3.5485 1.4786 12 6 0.0256 -4.7650 0.9850 13 6 1.1398 -4.8224 0.1729 14 6 1.8130 -3.6519 -0.1685 15 6 3.0030 -3.7031 -1.0422 16 6 3.0934 -2.8593 -2.1534 17 6 4.2044 -2.9129 -2.9630 18 6 5.2374 -3.8048 -2.6792 19 6 5.1543 -4.6435 -1.5749 20 6 4.0428 -4.5902 -0.7571 21 6 6.2588 -5.6101 -1.2365 22 6 7.1239 -5.8855 -2.4662 23 6 7.5583 -4.5464 -3.0761 24 7 6.3489 -3.8428 -3.5233 25 1 -0.4851 0.8400 -0.0004 26 1 -0.1588 -1.4459 1.5494 27 1 -1.3016 -3.5237 2.1166 28 1 -0.4950 -5.6754 1.2431 29 1 1.4870 -5.7740 -0.2016 30 1 2.2943 -2.1674 -2.3749 31 1 4.2761 -2.2623 -3.8220 32 1 3.9756 -5.2398 0.1030 33 1 6.8795 -5.1860 -0.4471 34 1 5.8238 -6.5457 -0.8851 35 1 8.0050 -6.4560 -2.1726 36 1 6.5485 -6.4527 -3.1978 37 1 8.0763 -3.9496 -2.3254 38 1 8.2173 -4.7244 -3.9260 39 1 6.3229 -3.4109 -4.3915 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241835686.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:55 Heat of formation + Delta-G solvation = 30.833177 kcal Electronic energy + Delta-G solvation = -20894.632610 eV Core-core repulsion = 17958.348737 eV Total energy + Delta-G solvation = -2936.283874 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.132 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.50084 -37.64446 -35.60340 -33.67320 -32.97723 -31.05702 -29.63909 -29.25862 -27.67100 -25.26479 -24.34789 -22.67610 -22.06590 -20.66743 -20.29353 -18.65335 -17.26232 -16.85364 -15.73981 -15.55735 -15.04020 -14.44707 -14.18537 -13.67139 -13.58625 -13.28876 -13.08741 -12.87948 -12.65769 -12.49194 -12.42884 -11.78661 -11.58524 -11.35543 -11.08976 -10.99765 -10.80611 -10.78508 -10.46203 -10.40174 -10.19220 -9.69839 -9.34733 -9.21690 -9.17573 -8.01099 -7.51424 -7.34960 -6.80962 -6.49095 -4.30602 2.15224 2.18461 2.84023 3.06713 3.10754 3.14347 3.27241 3.79251 3.93798 4.56760 4.66868 4.88818 5.04702 5.11718 5.48310 5.52623 5.64473 5.71000 5.79304 5.85272 6.01623 6.09906 6.17887 6.24925 6.27510 6.33998 6.44381 6.55272 6.68381 6.86414 6.94166 7.08405 7.20032 7.25883 7.38160 7.51772 7.64037 7.65100 7.84943 7.99359 8.09210 8.13802 8.18097 8.31844 8.65303 8.90113 8.99953 10.17899 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.016316 B = 0.006001 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.697993 B = 4664.924942 C = 6014.061900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.076 3.924 3 Si 0.904 3.096 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.450 4.450 8 H 0.083 0.917 9 C 0.127 3.873 10 C -0.159 4.159 11 C -0.105 4.105 12 C -0.244 4.244 13 C -0.076 4.076 14 C -0.174 4.174 15 C -0.028 4.028 16 C -0.055 4.055 17 C -0.193 4.193 18 C 0.189 3.811 19 C -0.160 4.160 20 C -0.088 4.088 21 C -0.066 4.066 22 C -0.136 4.136 23 C 0.128 3.872 24 N -0.760 5.760 25 H 0.281 0.719 26 H 0.118 0.882 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.128 0.872 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.052 0.948 38 H 0.070 0.930 39 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.407 -5.348 -4.759 12.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.479 4.479 8 H 0.101 0.899 9 C 0.124 3.876 10 C -0.178 4.178 11 C -0.124 4.124 12 C -0.263 4.263 13 C -0.095 4.095 14 C -0.176 4.176 15 C -0.029 4.029 16 C -0.074 4.074 17 C -0.215 4.215 18 C 0.089 3.911 19 C -0.165 4.165 20 C -0.107 4.107 21 C -0.104 4.104 22 C -0.174 4.174 23 C 0.003 3.997 24 N -0.394 5.394 25 H 0.092 0.908 26 H 0.135 0.865 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.146 0.854 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 10.340 -5.274 -4.677 12.514 hybrid contribution 0.214 1.006 -0.318 1.077 sum 10.554 -4.268 -4.996 12.432 Atomic orbital electron populations 1.69802 1.07532 1.29303 1.35118 1.25920 0.94672 1.01194 0.92377 0.86429 0.80211 0.80398 0.80153 1.18881 1.20381 1.18831 1.19525 0.97600 0.90670 1.40096 0.89945 1.17555 0.90647 0.91183 0.88175 1.21047 0.99015 0.96881 1.00900 1.20456 0.98629 0.93464 0.99808 1.20255 1.01501 0.96210 1.08322 1.20575 0.95563 0.95675 0.97656 1.18615 0.99689 0.93692 1.05590 1.18567 0.93956 0.95781 0.94644 1.21185 0.96543 0.96904 0.92729 1.20552 0.96017 1.01862 1.03111 1.17483 0.87737 0.94437 0.91445 1.19041 0.98041 1.00910 0.98462 1.20975 0.92437 0.99100 0.98181 1.20212 0.95179 0.97933 0.97047 1.21856 0.99831 0.97280 0.98453 1.21376 0.87041 0.92577 0.98720 1.44403 1.12293 1.62978 1.19717 0.90818 0.86456 0.89681 0.89645 0.89376 0.85422 0.87280 0.87037 0.91767 0.91340 0.91282 0.91517 0.93005 0.91150 0.77087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.12 10.94 55.55 0.61 -19.51 16 2 C 0.08 1.88 5.17 -17.32 -0.09 1.79 16 3 Si 0.90 18.73 29.59 -169.99 -5.03 13.70 16 4 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.45 -11.64 7.13 -37.93 -0.27 -11.91 16 8 H 0.08 2.13 6.61 -52.49 -0.35 1.78 16 9 C 0.13 3.34 5.56 -106.55 -0.59 2.75 16 10 C -0.16 -4.13 8.62 -39.29 -0.34 -4.47 16 11 C -0.11 -2.50 9.96 -39.97 -0.40 -2.89 16 12 C -0.24 -5.55 10.03 -39.39 -0.40 -5.94 16 13 C -0.08 -1.76 9.51 -39.28 -0.37 -2.13 16 14 C -0.17 -4.25 5.52 -104.23 -0.58 -4.83 16 15 C -0.03 -0.62 4.93 -104.92 -0.52 -1.13 16 16 C -0.06 -1.16 7.99 -39.23 -0.31 -1.48 16 17 C -0.19 -3.53 9.85 -39.39 -0.39 -3.92 16 18 C 0.19 3.20 6.48 -83.63 -0.54 2.66 16 19 C -0.16 -2.77 5.76 -104.46 -0.60 -3.37 16 20 C -0.09 -1.72 9.13 -39.12 -0.36 -2.08 16 21 C -0.07 -0.90 5.77 -28.00 -0.16 -1.06 16 22 C -0.14 -1.49 6.11 -26.59 -0.16 -1.66 16 23 C 0.13 1.39 7.11 -3.61 -0.03 1.37 16 24 N -0.76 -10.11 5.78 -58.02 -0.34 -10.45 16 25 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 26 H 0.12 3.12 6.20 -52.49 -0.33 2.79 16 27 H 0.08 1.81 8.06 -52.49 -0.42 1.38 16 28 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 29 H 0.09 1.83 8.05 -52.49 -0.42 1.40 16 30 H 0.13 2.88 7.31 -52.49 -0.38 2.50 16 31 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.11 2.07 8.04 -52.49 -0.42 1.65 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.40 4.48 8.85 -40.82 -0.36 4.11 16 LS Contribution 318.61 15.07 4.80 4.80 Total: -1.00 -27.68 318.61 -11.26 -38.94 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -5.20 Total: 10.84 kcal Atomic # 6 Polarization: -32.22 SS G_CDS: -6.10 Total: -38.32 kcal Atomic # 7 Polarization: -30.23 SS G_CDS: 0.27 Total: -29.96 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.68 -11.26 -38.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241835686.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.775 kcal (2) G-P(sol) polarization free energy of solvation -27.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds