Wall clock time and date at job start Wed Apr 15 2020 11:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30803 * 1 3 3 Si 1.86803 * 119.99540 * 2 1 4 4 H 1.48504 * 109.46850 * 239.99673 * 3 2 1 5 5 H 1.48496 * 109.47406 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47150 * 119.99755 * 3 2 1 7 7 C 1.40024 * 120.00383 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00284 * 164.28659 * 7 2 1 9 9 C 1.40833 * 119.99935 * 344.27901 * 7 2 1 10 10 C 1.40776 * 120.33593 * 333.81591 * 9 7 2 11 11 C 1.36389 * 119.98882 * 180.02562 * 10 9 7 12 12 C 1.38982 * 120.70749 * 359.74497 * 11 10 9 13 13 C 1.37997 * 120.68981 * 0.51688 * 12 11 10 14 14 C 1.39282 * 119.97223 * 359.48384 * 13 12 11 15 15 C 1.47717 * 120.34321 * 180.27697 * 14 13 12 16 16 C 1.39814 * 120.08088 * 130.00392 * 15 14 13 17 17 C 1.37579 * 119.76158 * 180.02562 * 16 15 14 18 18 C 1.39390 * 120.23651 * 0.02562 * 17 16 15 19 19 C 1.38919 * 120.25364 * 359.83245 * 18 17 16 20 20 C 1.38097 * 119.70839 * 359.96923 * 19 18 17 21 21 C 1.50622 * 121.47911 * 180.47321 * 19 18 17 22 22 C 1.52852 * 110.47936 * 339.28561 * 21 19 18 23 23 C 1.53427 * 108.83466 * 51.27159 * 22 21 19 24 24 N 1.39619 * 118.96435 * 179.60662 * 18 17 16 25 25 H 0.97001 * 120.00699 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.00278 * 359.97438 * 10 9 7 27 27 H 1.07998 * 119.64717 * 179.97438 * 11 10 9 28 28 H 1.07999 * 119.65410 * 180.25732 * 12 11 10 29 29 H 1.07997 * 120.01990 * 179.76909 * 13 12 11 30 30 H 1.07997 * 120.11900 * 0.06726 * 16 15 14 31 31 H 1.08001 * 119.87911 * 179.97438 * 17 16 15 32 32 H 1.07996 * 119.90136 * 180.08834 * 20 19 18 33 33 H 1.09001 * 109.30504 * 99.59077 * 21 19 18 34 34 H 1.09001 * 109.30306 * 218.97592 * 21 19 18 35 35 H 1.08997 * 109.57953 * 171.07622 * 22 21 19 36 36 H 1.08998 * 109.57533 * 291.34063 * 22 21 19 37 37 H 1.09000 * 109.79186 * 56.37124 * 23 22 21 38 38 H 1.09002 * 109.79241 * 177.20772 * 23 22 21 39 39 H 0.97004 * 120.51153 * 346.44144 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 3.0957 1.6965 -1.2125 5 1 1.2769 2.7465 -0.0006 6 1 3.0956 1.6966 1.2125 7 6 2.0082 -1.2126 0.0005 8 1 3.0579 -1.2302 -0.2527 9 6 1.3436 -2.4093 0.3315 10 6 0.2073 -2.3853 1.1622 11 6 -0.4305 -3.5485 1.4786 12 6 0.0256 -4.7650 0.9850 13 6 1.1398 -4.8224 0.1729 14 6 1.8130 -3.6519 -0.1685 15 6 3.0030 -3.7031 -1.0422 16 6 3.0934 -2.8593 -2.1534 17 6 4.2044 -2.9129 -2.9630 18 6 5.2374 -3.8048 -2.6792 19 6 5.1543 -4.6435 -1.5749 20 6 4.0428 -4.5902 -0.7571 21 6 6.2588 -5.6101 -1.2365 22 6 7.1239 -5.8855 -2.4662 23 6 7.5583 -4.5464 -3.0761 24 7 6.3489 -3.8428 -3.5233 25 1 -0.4851 0.8400 -0.0004 26 1 -0.1588 -1.4459 1.5494 27 1 -1.3016 -3.5237 2.1166 28 1 -0.4950 -5.6754 1.2431 29 1 1.4870 -5.7740 -0.2016 30 1 2.2943 -2.1674 -2.3749 31 1 4.2761 -2.2623 -3.8220 32 1 3.9756 -5.2398 0.1030 33 1 6.8795 -5.1860 -0.4471 34 1 5.8238 -6.5457 -0.8851 35 1 8.0050 -6.4560 -2.1726 36 1 6.5485 -6.4527 -3.1978 37 1 8.0763 -3.9496 -2.3254 38 1 8.2173 -4.7244 -3.9260 39 1 6.3229 -3.4109 -4.3915 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241835686.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:54 Heat of formation + Delta-G solvation = 18.039792 kcal Electronic energy + Delta-G solvation = -20895.187373 eV Core-core repulsion = 17958.348737 eV Total energy + Delta-G solvation = -2936.838636 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.132 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.85844 -39.35084 -36.95103 -35.53894 -34.17996 -32.62594 -31.43010 -30.67011 -29.22319 -27.09645 -25.55131 -23.99839 -23.53218 -22.45892 -21.85751 -20.01949 -19.12246 -18.12912 -17.32410 -16.91859 -16.67028 -15.91130 -15.54027 -15.28953 -15.03163 -14.67508 -14.43890 -14.31609 -14.06544 -14.00334 -13.81819 -13.36467 -13.20266 -13.03935 -12.79085 -12.56167 -12.33227 -12.12215 -11.97301 -11.68965 -11.55365 -11.34847 -11.09809 -11.03634 -10.65861 -9.48668 -9.26960 -9.23702 -8.62618 -7.93289 -6.23557 0.56148 0.69418 1.05495 1.34977 1.35946 1.46080 1.53920 2.20173 2.72344 2.77755 3.09176 3.79212 3.94269 4.03210 4.18792 4.22255 4.36385 4.49392 4.55622 4.62649 4.67997 4.74245 4.81685 4.83169 4.94558 4.96518 5.10205 5.17114 5.21229 5.34232 5.37190 5.42754 5.46919 5.57022 5.65487 5.79288 5.97842 6.06195 6.15765 6.25142 6.26135 6.45233 6.60785 6.74930 6.99270 7.03528 7.10000 8.35241 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.016316 B = 0.006001 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.697993 B = 4664.924942 C = 6014.061900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.038 3.962 3 Si 0.969 3.031 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.263 1.263 7 C -0.471 4.471 8 H 0.072 0.928 9 C 0.094 3.906 10 C -0.186 4.186 11 C -0.113 4.113 12 C -0.241 4.241 13 C -0.087 4.087 14 C -0.179 4.179 15 C -0.064 4.064 16 C -0.072 4.072 17 C -0.199 4.199 18 C 0.198 3.802 19 C -0.164 4.164 20 C -0.091 4.091 21 C -0.069 4.069 22 C -0.131 4.131 23 C 0.121 3.879 24 N -0.752 5.752 25 H 0.287 0.713 26 H 0.101 0.899 27 H 0.107 0.893 28 H 0.117 0.883 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.128 0.872 32 H 0.116 0.884 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.106 0.894 39 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.110 -6.574 -5.743 15.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.177 4.177 3 Si 0.791 3.209 4 H -0.185 1.185 5 H -0.190 1.190 6 H -0.188 1.188 7 C -0.501 4.501 8 H 0.090 0.910 9 C 0.091 3.909 10 C -0.206 4.206 11 C -0.131 4.131 12 C -0.260 4.260 13 C -0.105 4.105 14 C -0.180 4.180 15 C -0.066 4.066 16 C -0.091 4.091 17 C -0.221 4.221 18 C 0.096 3.904 19 C -0.168 4.168 20 C -0.110 4.110 21 C -0.106 4.106 22 C -0.169 4.169 23 C -0.003 4.003 24 N -0.384 5.384 25 H 0.097 0.903 26 H 0.119 0.881 27 H 0.125 0.875 28 H 0.135 0.865 29 H 0.129 0.871 30 H 0.117 0.883 31 H 0.146 0.854 32 H 0.134 0.866 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.119 0.881 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.124 0.876 39 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 13.068 -6.515 -5.684 15.669 hybrid contribution -0.534 1.234 -0.080 1.347 sum 12.534 -5.282 -5.765 14.773 Atomic orbital electron populations 1.69857 1.08779 1.30373 1.36008 1.26653 0.95375 1.04040 0.91618 0.85437 0.78998 0.76513 0.79971 1.18541 1.19030 1.18783 1.19555 0.97228 0.91666 1.41624 0.90968 1.17926 0.91463 0.92425 0.89039 1.21041 1.00114 0.97154 1.02259 1.20730 0.99149 0.93226 1.00005 1.20634 1.01197 0.96940 1.07241 1.20902 0.95606 0.96272 0.97733 1.19021 1.00406 0.93530 1.05072 1.18573 0.94527 0.98063 0.95400 1.20987 0.97176 0.97000 0.93899 1.20704 0.95556 1.02591 1.03267 1.17588 0.88247 0.93126 0.91476 1.19462 0.98311 1.01275 0.97768 1.21063 0.92659 0.98489 0.98747 1.20324 0.94429 0.97191 0.98705 1.21861 1.00450 0.97614 0.96961 1.21670 0.86184 0.92129 1.00318 1.44560 1.11877 1.62508 1.19505 0.90250 0.88102 0.87464 0.86545 0.87118 0.88323 0.85369 0.86589 0.91025 0.90547 0.88088 0.91956 0.92898 0.87574 0.75808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.79 10.94 21.84 0.24 -43.56 16 2 C 0.04 1.95 5.17 85.28 0.44 2.39 16 3 Si 0.97 39.52 29.59 68.60 2.03 41.55 16 4 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 5 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 6 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 7 C -0.47 -25.79 7.13 23.34 0.17 -25.62 16 8 H 0.07 3.96 6.61 -2.91 -0.02 3.94 16 9 C 0.09 5.20 5.56 -21.11 -0.12 5.08 16 10 C -0.19 -10.13 8.62 22.46 0.19 -9.94 16 11 C -0.11 -5.45 9.96 22.02 0.22 -5.23 16 12 C -0.24 -10.88 10.03 22.39 0.22 -10.66 16 13 C -0.09 -4.03 9.51 22.46 0.21 -3.82 16 14 C -0.18 -9.07 5.52 -19.61 -0.11 -9.17 16 15 C -0.06 -2.91 4.93 -20.06 -0.10 -3.01 16 16 C -0.07 -3.17 7.99 22.50 0.18 -2.99 16 17 C -0.20 -7.24 9.85 22.39 0.22 -7.02 16 18 C 0.20 6.37 6.48 38.34 0.25 6.62 16 19 C -0.16 -5.39 5.76 -19.76 -0.11 -5.51 16 20 C -0.09 -3.54 9.13 22.57 0.21 -3.34 16 21 C -0.07 -1.66 5.77 29.77 0.17 -1.49 16 22 C -0.13 -2.30 6.11 30.69 0.19 -2.11 16 23 C 0.12 2.08 7.11 86.45 0.61 2.69 16 24 N -0.75 -17.46 5.78 -337.48 -1.95 -19.41 16 25 H 0.29 13.87 8.30 -92.71 -0.77 13.10 16 26 H 0.10 5.70 6.20 -2.91 -0.02 5.68 16 27 H 0.11 4.56 8.06 -2.91 -0.02 4.53 16 28 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 29 H 0.11 4.52 8.05 -2.91 -0.02 4.49 16 30 H 0.10 4.82 7.31 -2.91 -0.02 4.79 16 31 H 0.13 4.02 8.06 -2.91 -0.02 3.99 16 32 H 0.12 4.29 8.04 -2.91 -0.02 4.26 16 33 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.08 1.72 8.12 -2.39 -0.02 1.70 16 35 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.41 7.78 8.85 -92.71 -0.82 6.96 16 Total: -1.00 -63.08 318.61 3.41 -59.67 By element: Atomic # 1 Polarization: 34.63 SS G_CDS: 0.24 Total: 34.87 kcal Atomic # 6 Polarization: -75.97 SS G_CDS: 2.85 Total: -73.12 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: -1.71 Total: -62.97 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.55 kcal Total: -63.08 3.41 -59.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241835686.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.713 kcal (2) G-P(sol) polarization free energy of solvation -63.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds