Wall clock time and date at job start Wed Apr 15 2020 11:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99759 * 2 1 4 4 H 1.48501 * 109.47195 * 270.00102 * 3 2 1 5 5 H 1.48506 * 109.46885 * 29.99954 * 3 2 1 6 6 H 1.48492 * 109.46989 * 149.99822 * 3 2 1 7 7 C 1.37873 * 120.00333 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99770 * 173.25666 * 7 2 1 9 9 C 1.50696 * 120.00202 * 353.25952 * 7 2 1 10 10 C 1.53007 * 115.54825 * 294.41511 * 9 7 2 11 11 N 1.46894 * 109.46990 * 275.55319 * 10 9 7 12 12 C 1.46897 * 111.00144 * 185.28919 * 11 10 9 13 13 H 1.09004 * 109.47399 * 36.90247 * 12 11 10 14 14 C 1.53004 * 109.47050 * 276.90653 * 12 11 10 15 15 O 1.42896 * 109.47101 * 294.99966 * 14 12 11 16 16 C 1.50698 * 109.47754 * 156.90779 * 12 11 10 17 17 C 1.38250 * 119.96982 * 36.74786 * 16 12 11 18 18 C 1.38199 * 120.02404 * 180.27679 * 17 16 12 19 19 C 1.38466 * 119.97176 * 0.02562 * 18 17 16 20 20 F 1.35103 * 120.02114 * 180.02562 * 19 18 17 21 21 C 1.38453 * 119.94965 * 359.97438 * 19 18 17 22 22 C 1.38196 * 119.97697 * 359.97438 * 21 19 18 23 23 C 1.53007 * 117.52069 * 80.11262 * 9 7 2 24 24 C 1.53001 * 117.50282 * 148.74541 * 9 7 2 25 25 H 0.96996 * 120.00652 * 5.00990 * 1 2 3 26 26 H 1.08996 * 109.47124 * 155.55141 * 10 9 7 27 27 H 1.09003 * 109.46743 * 35.55256 * 10 9 7 28 28 H 1.00903 * 111.00035 * 61.33359 * 11 10 9 29 29 H 1.08997 * 109.46837 * 55.00024 * 14 12 11 30 30 H 1.08999 * 109.47229 * 174.99611 * 14 12 11 31 31 H 0.96700 * 113.99690 * 179.97438 * 15 14 12 32 32 H 1.07998 * 119.98689 * 0.28169 * 17 16 12 33 33 H 1.07997 * 120.01662 * 180.02562 * 18 17 16 34 34 H 1.08003 * 120.00881 * 179.97438 * 21 19 18 35 35 H 1.08005 * 119.98885 * 180.02562 * 22 21 19 36 36 H 1.08998 * 117.49715 * 214.97575 * 23 9 7 37 37 H 1.08997 * 117.49406 * 359.97438 * 23 9 7 38 38 H 1.08999 * 117.49357 * 359.97142 * 24 9 7 39 39 H 1.08992 * 117.50212 * 144.97441 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5465 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0790 -1.1972 -0.1093 9 6 1.2590 -2.4945 0.1543 10 6 0.5678 -2.7034 1.5033 11 7 1.5324 -3.2468 2.4687 12 6 0.8752 -3.5782 3.7400 13 1 -0.1202 -3.9757 3.5416 14 6 0.7588 -2.3167 4.5979 15 8 2.0654 -1.8615 4.9552 16 6 1.6915 -4.6109 4.4735 17 6 3.0722 -4.5654 4.4199 18 6 3.8219 -5.5153 5.0874 19 6 3.1895 -6.5131 5.8097 20 9 3.9214 -7.4419 6.4631 21 6 1.8067 -6.5577 5.8626 22 6 1.0592 -5.6061 5.1951 23 6 0.5723 -3.0669 -1.0875 24 6 1.8392 -3.7280 -0.5407 25 1 -0.4851 0.8367 -0.0734 26 1 -0.2594 -3.4029 1.3832 27 1 0.1870 -1.7494 1.8679 28 1 2.2986 -2.6064 2.6139 29 1 0.2451 -1.5391 4.0328 30 1 0.1930 -2.5428 5.5017 31 1 2.0681 -1.0629 5.5006 32 1 3.5651 -3.7871 3.8562 33 1 4.9004 -5.4793 5.0458 34 1 1.3125 -7.3358 6.4253 35 1 -0.0195 -5.6404 5.2366 36 1 -0.3719 -3.5921 -0.9433 37 1 0.6593 -2.5024 -2.0158 38 1 2.7599 -3.5985 -1.1095 39 1 1.7289 -4.6881 -0.0368 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602808547.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:36 Heat of formation + Delta-G solvation = -46.253115 kcal Electronic energy + Delta-G solvation = -21761.743550 eV Core-core repulsion = 18391.347739 eV Total energy + Delta-G solvation = -3370.395811 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.77656 -39.36088 -37.29926 -36.37844 -34.17239 -31.99821 -31.02812 -30.50901 -27.55965 -25.66839 -24.33942 -23.05580 -22.46418 -21.00004 -20.19391 -19.07655 -17.59468 -17.29960 -16.13773 -16.03935 -15.50583 -15.45787 -14.92991 -14.70616 -14.45804 -14.08260 -13.71442 -13.49690 -13.28891 -12.94685 -12.66429 -12.24147 -12.16928 -11.62874 -11.47533 -11.32934 -10.99942 -10.96439 -10.83957 -10.74990 -10.45601 -10.11235 -9.82798 -9.34238 -8.91838 -8.83634 -8.48474 -8.37290 -8.06549 -7.55067 -6.05175 -4.09575 1.32016 1.43949 3.25444 3.32958 3.37241 3.76435 4.36424 4.37984 4.40487 4.77512 4.94357 4.98134 5.04023 5.20033 5.33777 5.49267 5.53263 5.56219 5.62921 5.82136 5.83166 6.07763 6.18923 6.22255 6.28051 6.46752 6.51608 6.59799 6.76178 6.89082 6.90984 6.95000 7.07198 7.16510 7.52174 7.55980 7.74744 7.87396 7.94587 8.22713 8.48963 8.92030 9.54294 11.02258 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.022334 B = 0.004569 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.386898 B = 6126.979407 C = 6498.999484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.070 3.930 3 Si 0.886 3.114 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.490 4.490 8 H 0.059 0.941 9 C 0.052 3.948 10 C 0.105 3.895 11 N -0.673 5.673 12 C 0.126 3.874 13 H 0.092 0.908 14 C 0.049 3.951 15 O -0.563 6.563 16 C -0.061 4.061 17 C -0.043 4.043 18 C -0.159 4.159 19 C 0.083 3.917 20 F -0.148 7.148 21 C -0.160 4.160 22 C -0.095 4.095 23 C -0.177 4.177 24 C -0.193 4.193 25 H 0.259 0.741 26 H 0.038 0.962 27 H 0.046 0.954 28 H 0.354 0.646 29 H 0.055 0.945 30 H 0.041 0.959 31 H 0.375 0.625 32 H 0.138 0.862 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.917 -7.377 11.812 13.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.132 4.132 3 Si 0.714 3.286 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.528 4.528 8 H 0.077 0.923 9 C 0.052 3.948 10 C -0.023 4.023 11 N -0.304 5.304 12 C 0.015 3.985 13 H 0.110 0.890 14 C -0.031 4.031 15 O -0.368 6.368 16 C -0.062 4.062 17 C -0.061 4.061 18 C -0.178 4.178 19 C 0.064 3.936 20 F -0.127 7.127 21 C -0.179 4.179 22 C -0.114 4.114 23 C -0.216 4.216 24 C -0.230 4.230 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.174 0.826 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.222 0.778 32 H 0.155 0.845 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.144 0.856 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.910 -8.432 11.288 14.119 hybrid contribution 0.061 2.142 0.685 2.250 sum 0.971 -6.290 11.973 13.560 Atomic orbital electron populations 1.69979 1.05824 1.26562 1.49462 1.24966 0.94755 0.98748 0.94766 0.86690 0.80068 0.83688 0.78201 1.20736 1.21350 1.19733 1.20545 0.93044 0.89016 1.50208 0.92327 1.18743 0.96999 0.91130 0.87968 1.21496 0.92146 0.96490 0.92218 1.60597 1.12327 1.50683 1.06835 1.20580 0.97166 0.91315 0.89484 0.88993 1.22902 0.84803 0.97399 0.97965 1.86456 1.28103 1.47985 1.74218 1.19825 0.94246 0.95535 0.96589 1.20871 0.93263 0.96678 0.95321 1.21164 1.00818 0.95788 1.00053 1.17711 0.89452 0.89433 0.97009 1.91457 1.77565 1.64289 1.79415 1.20952 0.91967 1.01499 1.03516 1.20835 0.99771 0.93918 0.96850 1.22719 0.93708 1.04330 1.00809 1.22722 0.96578 0.97597 1.06098 0.93137 0.94304 0.93557 0.82618 0.92665 0.94122 0.77819 0.84464 0.85239 0.85393 0.85568 0.92198 0.90634 0.91179 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.00 12.57 55.43 0.70 -23.30 16 2 C 0.07 1.85 5.24 -17.82 -0.09 1.76 16 3 Si 0.89 20.48 29.55 -169.99 -5.02 15.45 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.49 -12.89 8.82 -34.44 -0.30 -13.20 16 8 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 9 C 0.05 1.25 1.49 -155.65 -0.23 1.02 16 10 C 0.10 2.25 5.32 -3.82 -0.02 2.23 16 11 N -0.67 -12.37 5.53 -107.95 -0.60 -12.96 16 12 C 0.13 1.90 2.64 -68.86 -0.18 1.71 16 13 H 0.09 1.33 7.64 -51.93 -0.40 0.93 16 14 C 0.05 0.68 6.70 37.16 0.25 0.93 16 15 O -0.56 -7.71 11.74 -35.23 -0.41 -8.13 16 16 C -0.06 -0.87 4.80 -104.62 -0.50 -1.37 16 17 C -0.04 -0.63 8.41 -39.59 -0.33 -0.96 16 18 C -0.16 -2.17 10.03 -39.51 -0.40 -2.56 16 19 C 0.08 1.12 7.30 -39.42 -0.29 0.84 16 20 F -0.15 -2.04 17.27 2.25 0.04 -2.00 16 21 C -0.16 -1.98 10.03 -39.52 -0.40 -2.37 16 22 C -0.10 -1.19 9.67 -39.60 -0.38 -1.57 16 23 C -0.18 -4.13 9.88 -26.72 -0.26 -4.39 16 24 C -0.19 -4.24 9.85 -26.73 -0.26 -4.50 16 25 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 26 H 0.04 0.81 7.70 -51.93 -0.40 0.41 16 27 H 0.05 1.10 6.48 -51.93 -0.34 0.76 16 28 H 0.35 6.95 7.25 -39.29 -0.28 6.66 16 29 H 0.06 0.85 7.31 -51.93 -0.38 0.47 16 30 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.38 3.64 9.12 45.56 0.42 4.06 16 32 H 0.14 2.11 7.03 -52.49 -0.37 1.74 16 33 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 34 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 35 H 0.13 1.29 8.06 -52.48 -0.42 0.86 16 36 H 0.06 1.32 8.06 -51.93 -0.42 0.90 16 37 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 38 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 39 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 LS Contribution 331.62 15.07 5.00 5.00 Total: -1.00 -28.17 331.62 -8.38 -36.56 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -4.67 Total: 11.83 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -3.41 Total: -22.44 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.10 Total: -36.27 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: -0.41 Total: -8.13 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.17 -8.38 -36.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602808547.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.697 kcal (2) G-P(sol) polarization free energy of solvation -28.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds