Wall clock time and date at job start Wed Apr 15 2020 11:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99759 * 2 1 4 4 H 1.48501 * 109.47195 * 270.00102 * 3 2 1 5 5 H 1.48506 * 109.46885 * 29.99954 * 3 2 1 6 6 H 1.48492 * 109.46989 * 149.99822 * 3 2 1 7 7 C 1.37873 * 120.00333 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99770 * 173.25666 * 7 2 1 9 9 C 1.50696 * 120.00202 * 353.25952 * 7 2 1 10 10 C 1.53007 * 115.54825 * 294.41511 * 9 7 2 11 11 N 1.46894 * 109.46990 * 275.55319 * 10 9 7 12 12 C 1.46897 * 111.00144 * 185.28919 * 11 10 9 13 13 H 1.09004 * 109.47399 * 36.90247 * 12 11 10 14 14 C 1.53004 * 109.47050 * 276.90653 * 12 11 10 15 15 O 1.42896 * 109.47101 * 294.99966 * 14 12 11 16 16 C 1.50698 * 109.47754 * 156.90779 * 12 11 10 17 17 C 1.38250 * 119.96982 * 36.74786 * 16 12 11 18 18 C 1.38199 * 120.02404 * 180.27679 * 17 16 12 19 19 C 1.38466 * 119.97176 * 0.02562 * 18 17 16 20 20 F 1.35103 * 120.02114 * 180.02562 * 19 18 17 21 21 C 1.38453 * 119.94965 * 359.97438 * 19 18 17 22 22 C 1.38196 * 119.97697 * 359.97438 * 21 19 18 23 23 C 1.53007 * 117.52069 * 80.11262 * 9 7 2 24 24 C 1.53001 * 117.50282 * 148.74541 * 9 7 2 25 25 H 0.96996 * 120.00652 * 5.00990 * 1 2 3 26 26 H 1.08996 * 109.47124 * 155.55141 * 10 9 7 27 27 H 1.09003 * 109.46743 * 35.55256 * 10 9 7 28 28 H 1.00903 * 111.00035 * 61.33359 * 11 10 9 29 29 H 1.08997 * 109.46837 * 55.00024 * 14 12 11 30 30 H 1.08999 * 109.47229 * 174.99611 * 14 12 11 31 31 H 0.96700 * 113.99690 * 179.97438 * 15 14 12 32 32 H 1.07998 * 119.98689 * 0.28169 * 17 16 12 33 33 H 1.07997 * 120.01662 * 180.02562 * 18 17 16 34 34 H 1.08003 * 120.00881 * 179.97438 * 21 19 18 35 35 H 1.08005 * 119.98885 * 180.02562 * 22 21 19 36 36 H 1.08998 * 117.49715 * 214.97575 * 23 9 7 37 37 H 1.08997 * 117.49406 * 359.97438 * 23 9 7 38 38 H 1.08999 * 117.49357 * 359.97142 * 24 9 7 39 39 H 1.08992 * 117.50212 * 144.97441 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5465 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0790 -1.1972 -0.1093 9 6 1.2590 -2.4945 0.1543 10 6 0.5678 -2.7034 1.5033 11 7 1.5324 -3.2468 2.4687 12 6 0.8752 -3.5782 3.7400 13 1 -0.1202 -3.9757 3.5416 14 6 0.7588 -2.3167 4.5979 15 8 2.0654 -1.8615 4.9552 16 6 1.6915 -4.6109 4.4735 17 6 3.0722 -4.5654 4.4199 18 6 3.8219 -5.5153 5.0874 19 6 3.1895 -6.5131 5.8097 20 9 3.9214 -7.4419 6.4631 21 6 1.8067 -6.5577 5.8626 22 6 1.0592 -5.6061 5.1951 23 6 0.5723 -3.0669 -1.0875 24 6 1.8392 -3.7280 -0.5407 25 1 -0.4851 0.8367 -0.0734 26 1 -0.2594 -3.4029 1.3832 27 1 0.1870 -1.7494 1.8679 28 1 2.2986 -2.6064 2.6139 29 1 0.2451 -1.5391 4.0328 30 1 0.1930 -2.5428 5.5017 31 1 2.0681 -1.0629 5.5006 32 1 3.5651 -3.7871 3.8562 33 1 4.9004 -5.4793 5.0458 34 1 1.3125 -7.3358 6.4253 35 1 -0.0195 -5.6404 5.2366 36 1 -0.3719 -3.5921 -0.9433 37 1 0.6593 -2.5024 -2.0158 38 1 2.7599 -3.5985 -1.1095 39 1 1.7289 -4.6881 -0.0368 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602808547.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:36 Heat of formation + Delta-G solvation = -63.375579 kcal Electronic energy + Delta-G solvation = -21762.486035 eV Core-core repulsion = 18391.347739 eV Total energy + Delta-G solvation = -3371.138297 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.81705 -40.46703 -38.75336 -37.76576 -35.49612 -34.01217 -32.07930 -31.71567 -28.75897 -27.60522 -25.88548 -24.13472 -23.59079 -22.80584 -21.36848 -20.90906 -18.70431 -18.39665 -17.89383 -17.11115 -16.77379 -16.63059 -16.51414 -16.15390 -15.74182 -15.60771 -15.10173 -14.60892 -14.50019 -14.31496 -13.99502 -13.64350 -13.32687 -13.22887 -13.05930 -12.91398 -12.80359 -12.54114 -12.27431 -12.15353 -11.94444 -11.78095 -11.19876 -10.92957 -10.74106 -10.40537 -9.95133 -9.92210 -9.41587 -9.04855 -8.06997 -6.16429 0.27617 0.43287 1.40546 1.43787 1.52642 2.44181 2.71368 3.15881 3.23788 3.38475 3.55869 3.80812 3.88693 3.92407 4.06607 4.20018 4.40283 4.47613 4.50558 4.51828 4.63462 4.68604 4.77884 4.81832 5.06800 5.08584 5.10176 5.16570 5.18441 5.26332 5.31709 5.43568 5.67899 5.68536 5.74759 5.89818 6.04477 6.41521 6.49397 6.64244 6.89291 6.92199 7.49613 8.99563 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.022334 B = 0.004569 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.386898 B = 6126.979407 C = 6498.999484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.031 3.969 3 Si 0.942 3.058 4 H -0.281 1.281 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.505 4.505 8 H 0.047 0.953 9 C 0.029 3.971 10 C 0.123 3.877 11 N -0.670 5.670 12 C 0.123 3.877 13 H 0.101 0.899 14 C 0.056 3.944 15 O -0.577 6.577 16 C -0.070 4.070 17 C -0.057 4.057 18 C -0.165 4.165 19 C 0.072 3.928 20 F -0.151 7.151 21 C -0.155 4.155 22 C -0.091 4.091 23 C -0.182 4.182 24 C -0.172 4.172 25 H 0.259 0.741 26 H 0.043 0.957 27 H 0.019 0.981 28 H 0.345 0.655 29 H 0.034 0.966 30 H 0.068 0.932 31 H 0.392 0.608 32 H 0.123 0.877 33 H 0.139 0.861 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.681 -8.223 13.126 15.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.169 4.169 3 Si 0.769 3.231 4 H -0.207 1.207 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.542 4.542 8 H 0.065 0.935 9 C 0.029 3.971 10 C -0.006 4.006 11 N -0.301 5.301 12 C 0.013 3.987 13 H 0.119 0.881 14 C -0.024 4.024 15 O -0.384 6.384 16 C -0.071 4.071 17 C -0.075 4.075 18 C -0.183 4.183 19 C 0.053 3.947 20 F -0.130 7.130 21 C -0.173 4.173 22 C -0.109 4.109 23 C -0.221 4.221 24 C -0.209 4.209 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.037 0.963 28 H 0.164 0.836 29 H 0.052 0.948 30 H 0.086 0.914 31 H 0.241 0.759 32 H 0.141 0.859 33 H 0.157 0.843 34 H 0.172 0.828 35 H 0.171 0.829 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.681 -9.281 12.615 15.676 hybrid contribution 0.161 2.365 0.298 2.389 sum 0.842 -6.916 12.914 14.674 Atomic orbital electron populations 1.70070 1.06839 1.27115 1.50196 1.25542 0.95437 1.01373 0.94556 0.85801 0.79018 0.80311 0.77995 1.20730 1.20986 1.19425 1.20747 0.92714 0.90550 1.50232 0.93489 1.18913 0.97815 0.91096 0.89306 1.21156 0.92416 0.95342 0.91724 1.60541 1.11577 1.49610 1.08339 1.20672 0.97463 0.92297 0.88283 0.88116 1.22769 0.84963 0.96088 0.98578 1.86425 1.28126 1.49112 1.74746 1.19793 0.93983 0.95999 0.97316 1.20795 0.93713 0.96942 0.96084 1.21266 1.01454 0.95675 0.99940 1.17897 0.90160 0.89445 0.97220 1.91452 1.77749 1.64322 1.79459 1.21251 0.91433 1.01738 1.02911 1.21096 1.01175 0.92873 0.95790 1.22668 0.94886 1.04669 0.99838 1.22670 0.95768 0.97497 1.04976 0.93212 0.93851 0.96321 0.83644 0.94775 0.91405 0.75923 0.85928 0.84283 0.82829 0.82877 0.91027 0.92499 0.91386 0.89536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.70 12.57 21.45 0.27 -49.44 16 2 C 0.03 1.66 5.24 84.65 0.44 2.10 16 3 Si 0.94 42.28 29.55 68.60 2.03 44.31 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.50 -26.83 8.82 25.60 0.23 -26.60 16 8 H 0.05 2.54 7.82 -2.91 -0.02 2.52 16 9 C 0.03 1.41 1.49 -52.92 -0.08 1.33 16 10 C 0.12 5.26 5.32 86.31 0.46 5.72 16 11 N -0.67 -24.38 5.53 -495.45 -2.74 -27.12 16 12 C 0.12 3.56 2.64 44.17 0.12 3.67 16 13 H 0.10 2.71 7.64 -2.39 -0.02 2.69 16 14 C 0.06 1.47 6.70 71.98 0.48 1.95 16 15 O -0.58 -15.33 11.74 -148.98 -1.75 -17.08 16 16 C -0.07 -1.87 4.80 -19.86 -0.10 -1.97 16 17 C -0.06 -1.61 8.41 22.26 0.19 -1.43 16 18 C -0.16 -4.28 10.03 22.31 0.22 -4.06 16 19 C 0.07 1.80 7.30 22.38 0.16 1.96 16 20 F -0.15 -3.86 17.27 44.97 0.78 -3.09 16 21 C -0.15 -3.34 10.03 22.31 0.22 -3.11 16 22 C -0.09 -1.99 9.67 22.26 0.22 -1.78 16 23 C -0.18 -8.47 9.88 30.60 0.30 -8.16 16 24 C -0.17 -7.44 9.85 30.60 0.30 -7.14 16 25 H 0.26 13.67 8.32 -92.71 -0.77 12.89 16 26 H 0.04 1.79 7.70 -2.39 -0.02 1.77 16 27 H 0.02 0.90 6.48 -2.39 -0.02 0.88 16 28 H 0.34 13.66 7.25 -89.69 -0.65 13.01 16 29 H 0.03 1.05 7.31 -2.39 -0.02 1.03 16 30 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.39 7.20 9.12 -74.06 -0.68 6.52 16 32 H 0.12 3.79 7.03 -2.91 -0.02 3.77 16 33 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 34 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 35 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 36 H 0.07 3.11 8.06 -2.39 -0.02 3.09 16 37 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 38 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 39 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 Total: -1.00 -59.36 331.62 1.50 -57.86 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: -0.26 Total: 32.06 kcal Atomic # 6 Polarization: -40.68 SS G_CDS: 3.17 Total: -37.51 kcal Atomic # 7 Polarization: -74.09 SS G_CDS: -2.47 Total: -76.56 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -1.75 Total: -17.08 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.78 Total: -3.09 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -59.36 1.50 -57.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602808547.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.518 kcal (2) G-P(sol) polarization free energy of solvation -59.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds