Wall clock time and date at job start Wed Apr 15 2020 11:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00371 * 2 1 4 4 H 1.48496 * 109.47199 * 267.69924 * 3 2 1 5 5 H 1.48503 * 109.46658 * 27.69363 * 3 2 1 6 6 H 1.48496 * 109.47036 * 147.69252 * 3 2 1 7 7 C 1.37877 * 120.00169 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99953 * 353.74451 * 7 2 1 9 9 C 1.50700 * 120.00664 * 173.74868 * 7 2 1 10 10 C 1.52996 * 115.54740 * 299.13121 * 9 7 2 11 11 N 1.46907 * 109.46901 * 320.96566 * 10 9 7 12 12 C 1.46905 * 110.99998 * 183.81644 * 11 10 9 13 13 H 1.09007 * 109.47177 * 325.97530 * 12 11 10 14 14 C 1.53001 * 109.47044 * 85.96904 * 12 11 10 15 15 O 1.42906 * 109.46720 * 65.00203 * 14 12 11 16 16 C 1.50697 * 109.47245 * 205.96992 * 12 11 10 17 17 C 1.38240 * 119.97395 * 321.12241 * 16 12 11 18 18 C 1.38199 * 120.02081 * 179.72666 * 17 16 12 19 19 C 1.38456 * 119.97605 * 0.51779 * 18 17 16 20 20 F 1.35100 * 120.02403 * 179.72969 * 19 18 17 21 21 C 1.38453 * 119.95056 * 359.75393 * 19 18 17 22 22 C 1.38202 * 119.97331 * 359.97438 * 21 19 18 23 23 C 1.53004 * 117.49858 * 84.79522 * 9 7 2 24 24 C 1.52996 * 60.02810 * 107.50449 * 23 9 7 25 25 H 0.97002 * 119.99862 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47452 * 80.96454 * 10 9 7 27 27 H 1.08999 * 109.47012 * 200.96799 * 10 9 7 28 28 H 1.00898 * 110.99923 * 307.76385 * 11 10 9 29 29 H 1.08994 * 109.47394 * 184.99975 * 14 12 11 30 30 H 1.08999 * 109.47214 * 305.00353 * 14 12 11 31 31 H 0.96699 * 113.99306 * 179.97438 * 15 14 12 32 32 H 1.07995 * 119.99138 * 359.97284 * 17 16 12 33 33 H 1.08008 * 120.00821 * 180.29690 * 18 17 16 34 34 H 1.08005 * 120.01656 * 179.97438 * 21 19 18 35 35 H 1.07999 * 119.98694 * 180.02562 * 22 21 19 36 36 H 1.08998 * 117.49872 * 215.00787 * 23 9 7 37 37 H 1.08995 * 117.49849 * 0.02562 * 23 9 7 38 38 H 1.09001 * 117.50103 * 107.50477 * 24 23 9 39 39 H 1.09004 * 117.49957 * 252.51980 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5454 2.0183 -1.3989 5 1 1.4231 2.6662 0.6507 6 1 3.5214 1.4546 0.7483 7 6 2.0045 -1.1940 -0.0005 8 1 1.4693 -2.1267 0.1010 9 6 3.5048 -1.1980 -0.1426 10 6 4.0463 -0.5938 -1.4398 11 7 3.1763 -0.9781 -2.5594 12 6 3.7153 -0.4908 -3.8362 13 1 4.2132 0.4661 -3.6789 14 6 4.7210 -1.5047 -4.3853 15 8 4.0447 -2.7234 -4.7009 16 6 2.5895 -0.3153 -4.8225 17 6 1.5569 -1.2335 -4.8625 18 6 0.5211 -1.0704 -5.7627 19 6 0.5233 0.0072 -6.6321 20 9 -0.4860 0.1646 -7.5163 21 6 1.5610 0.9231 -6.5950 22 6 2.5929 0.7611 -5.6900 23 6 4.3352 -1.0039 1.1277 24 6 4.2691 -2.3791 0.4604 25 1 -0.4850 0.8401 0.0004 26 1 4.0685 0.4925 -1.3531 27 1 5.0553 -0.9647 -1.6198 28 1 3.0377 -1.9772 -2.5833 29 1 5.1863 -1.1038 -5.2857 30 1 5.4879 -1.6984 -3.6354 31 1 4.6222 -3.4132 -5.0555 32 1 1.5575 -2.0763 -4.1873 33 1 -0.2881 -1.7853 -5.7905 34 1 1.5640 1.7639 -7.2729 35 1 3.4022 1.4756 -5.6606 36 1 5.2673 -0.4458 1.0392 37 1 3.7965 -0.8738 2.0662 38 1 5.1578 -2.7259 -0.0670 39 1 3.6865 -3.1533 0.9597 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602808549.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:38 Heat of formation + Delta-G solvation = -36.112662 kcal Electronic energy + Delta-G solvation = -22144.700375 eV Core-core repulsion = 18774.744288 eV Total energy + Delta-G solvation = -3369.956088 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.63772 -39.31275 -37.49021 -36.64079 -34.32500 -31.94032 -30.91030 -30.55635 -27.72134 -25.72753 -24.41065 -23.00001 -22.41963 -21.49300 -20.22749 -18.96787 -17.60630 -17.30928 -16.30149 -15.93225 -15.57615 -15.36100 -15.23644 -14.76742 -14.31987 -14.03845 -13.54838 -13.51313 -13.18830 -12.99080 -12.62887 -12.52179 -12.38081 -12.17265 -11.69491 -11.35292 -11.12399 -10.85868 -10.64885 -10.59122 -10.34098 -10.08487 -9.96571 -9.39726 -9.04124 -8.75880 -8.54431 -8.29421 -8.21004 -7.58485 -5.93289 -3.91036 1.45761 1.59598 3.43125 3.49395 3.51780 3.88104 4.27259 4.54105 4.59681 4.70582 4.91579 4.98668 5.06696 5.13927 5.23281 5.43109 5.47313 5.54328 5.62583 5.65440 5.80538 5.88462 5.97766 6.16901 6.20446 6.21906 6.34316 6.40691 6.47905 6.60244 6.63808 6.74568 6.90277 7.03071 7.15807 7.21655 7.61181 7.76401 7.94533 8.19291 8.64647 9.07071 9.73380 11.19230 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016847 B = 0.006375 C = 0.005368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.631261 B = 4390.773681 C = 5215.037779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.096 3.904 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.301 1.301 6 H -0.262 1.262 7 C -0.466 4.466 8 H 0.072 0.928 9 C 0.004 3.996 10 C 0.094 3.906 11 N -0.643 5.643 12 C 0.122 3.878 13 H 0.090 0.910 14 C 0.050 3.950 15 O -0.560 6.560 16 C -0.064 4.064 17 C -0.033 4.033 18 C -0.158 4.158 19 C 0.085 3.915 20 F -0.149 7.149 21 C -0.163 4.163 22 C -0.096 4.096 23 C -0.198 4.198 24 C -0.188 4.188 25 H 0.261 0.739 26 H 0.056 0.944 27 H 0.008 0.992 28 H 0.354 0.646 29 H 0.044 0.956 30 H 0.047 0.953 31 H 0.374 0.626 32 H 0.139 0.861 33 H 0.131 0.869 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.549 -1.412 -11.913 15.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.107 4.107 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.229 1.229 6 H -0.187 1.187 7 C -0.503 4.503 8 H 0.090 0.910 9 C 0.002 3.998 10 C -0.035 4.035 11 N -0.274 5.274 12 C 0.011 3.989 13 H 0.108 0.892 14 C -0.030 4.030 15 O -0.364 6.364 16 C -0.065 4.065 17 C -0.051 4.051 18 C -0.177 4.177 19 C 0.066 3.934 20 F -0.127 7.127 21 C -0.182 4.182 22 C -0.114 4.114 23 C -0.236 4.236 24 C -0.225 4.225 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.026 0.974 28 H 0.175 0.825 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.221 0.779 32 H 0.157 0.843 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.390 -0.421 -11.625 14.342 hybrid contribution 1.522 0.229 -0.446 1.602 sum 9.912 -0.192 -12.071 15.620 Atomic orbital electron populations 1.69890 1.06409 1.26732 1.50454 1.24704 0.94172 0.98549 0.93265 0.86960 0.80487 0.83933 0.78253 1.20176 1.22890 1.18651 1.19994 0.86267 0.94270 1.49777 0.90990 1.19472 0.95016 0.96662 0.88619 1.21667 0.91336 0.99042 0.91485 1.60302 1.47550 1.20810 0.98740 1.20624 0.91239 0.97020 0.89976 0.89188 1.22913 0.95010 0.86493 0.98540 1.86529 1.38946 1.24239 1.86731 1.19697 0.96565 0.94547 0.95677 1.20850 0.90965 0.98442 0.94861 1.21170 1.00944 0.98226 0.97319 1.17704 0.86869 0.97438 0.91367 1.91451 1.58809 1.95614 1.66858 1.20910 0.95023 1.00070 1.02154 1.20792 0.98059 0.97439 0.95153 1.23045 1.01394 0.99207 0.99946 1.22826 1.01570 0.92005 1.06093 0.92924 0.92542 0.97425 0.82461 0.93792 0.93482 0.77945 0.84303 0.85145 0.85473 0.85804 0.91718 0.89597 0.91488 0.89873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 13.96 55.43 0.77 -26.61 16 2 C 0.10 2.72 5.46 -17.82 -0.10 2.62 16 3 Si 0.87 21.93 24.78 -169.99 -4.21 17.72 16 4 H -0.28 -6.84 6.99 56.52 0.40 -6.44 16 5 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 6 H -0.26 -6.20 6.14 56.52 0.35 -5.86 16 7 C -0.47 -12.62 8.72 -34.44 -0.30 -12.92 16 8 H 0.07 2.15 8.06 -52.48 -0.42 1.73 16 9 C 0.00 0.08 1.13 -155.63 -0.18 -0.10 16 10 C 0.09 1.86 4.74 -3.82 -0.02 1.84 16 11 N -0.64 -12.34 4.99 -107.94 -0.54 -12.88 16 12 C 0.12 1.91 2.65 -68.86 -0.18 1.72 16 13 H 0.09 1.35 7.71 -51.93 -0.40 0.95 16 14 C 0.05 0.61 6.70 37.16 0.25 0.86 16 15 O -0.56 -6.79 11.55 -35.23 -0.41 -7.19 16 16 C -0.06 -1.03 4.82 -104.62 -0.50 -1.54 16 17 C -0.03 -0.56 8.34 -39.59 -0.33 -0.89 16 18 C -0.16 -2.53 10.03 -39.52 -0.40 -2.93 16 19 C 0.09 1.34 7.30 -39.42 -0.29 1.06 16 20 F -0.15 -2.33 17.27 2.25 0.04 -2.29 16 21 C -0.16 -2.34 10.03 -39.52 -0.40 -2.73 16 22 C -0.10 -1.39 9.67 -39.59 -0.38 -1.77 16 23 C -0.20 -4.10 8.58 -26.73 -0.23 -4.33 16 24 C -0.19 -3.68 9.88 -26.70 -0.26 -3.94 16 25 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 26 H 0.06 1.19 5.21 -51.93 -0.27 0.92 16 27 H 0.01 0.14 7.16 -51.93 -0.37 -0.24 16 28 H 0.35 6.85 7.26 -39.29 -0.29 6.56 16 29 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.55 7.38 -51.93 -0.38 0.17 16 31 H 0.37 2.82 9.12 45.56 0.42 3.24 16 32 H 0.14 2.45 7.07 -52.49 -0.37 2.07 16 33 H 0.13 1.88 8.06 -52.48 -0.42 1.46 16 34 H 0.13 1.52 8.06 -52.48 -0.42 1.09 16 35 H 0.12 1.47 8.04 -52.49 -0.42 1.05 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.09 1.86 8.14 -51.93 -0.42 1.43 16 38 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 39 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 LS Contribution 322.92 15.07 4.87 4.87 Total: -1.00 -31.08 322.92 -7.46 -38.54 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -4.66 Total: 10.88 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -3.32 Total: -23.04 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.24 Total: -39.49 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.41 Total: -7.19 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.04 Total: -2.29 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.21 Total: 17.72 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.08 -7.46 -38.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602808549.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.427 kcal (2) G-P(sol) polarization free energy of solvation -31.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds