Wall clock time and date at job start Wed Apr 15 2020 11:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00371 * 2 1 4 4 H 1.48496 * 109.47199 * 267.69924 * 3 2 1 5 5 H 1.48503 * 109.46658 * 27.69363 * 3 2 1 6 6 H 1.48496 * 109.47036 * 147.69252 * 3 2 1 7 7 C 1.37877 * 120.00169 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99953 * 353.74451 * 7 2 1 9 9 C 1.50700 * 120.00664 * 173.74868 * 7 2 1 10 10 C 1.52996 * 115.54740 * 299.13121 * 9 7 2 11 11 N 1.46907 * 109.46901 * 320.96566 * 10 9 7 12 12 C 1.46905 * 110.99998 * 183.81644 * 11 10 9 13 13 H 1.09007 * 109.47177 * 325.97530 * 12 11 10 14 14 C 1.53001 * 109.47044 * 85.96904 * 12 11 10 15 15 O 1.42906 * 109.46720 * 65.00203 * 14 12 11 16 16 C 1.50697 * 109.47245 * 205.96992 * 12 11 10 17 17 C 1.38240 * 119.97395 * 321.12241 * 16 12 11 18 18 C 1.38199 * 120.02081 * 179.72666 * 17 16 12 19 19 C 1.38456 * 119.97605 * 0.51779 * 18 17 16 20 20 F 1.35100 * 120.02403 * 179.72969 * 19 18 17 21 21 C 1.38453 * 119.95056 * 359.75393 * 19 18 17 22 22 C 1.38202 * 119.97331 * 359.97438 * 21 19 18 23 23 C 1.53004 * 117.49858 * 84.79522 * 9 7 2 24 24 C 1.52996 * 60.02810 * 107.50449 * 23 9 7 25 25 H 0.97002 * 119.99862 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47452 * 80.96454 * 10 9 7 27 27 H 1.08999 * 109.47012 * 200.96799 * 10 9 7 28 28 H 1.00898 * 110.99923 * 307.76385 * 11 10 9 29 29 H 1.08994 * 109.47394 * 184.99975 * 14 12 11 30 30 H 1.08999 * 109.47214 * 305.00353 * 14 12 11 31 31 H 0.96699 * 113.99306 * 179.97438 * 15 14 12 32 32 H 1.07995 * 119.99138 * 359.97284 * 17 16 12 33 33 H 1.08008 * 120.00821 * 180.29690 * 18 17 16 34 34 H 1.08005 * 120.01656 * 179.97438 * 21 19 18 35 35 H 1.07999 * 119.98694 * 180.02562 * 22 21 19 36 36 H 1.08998 * 117.49872 * 215.00787 * 23 9 7 37 37 H 1.08995 * 117.49849 * 0.02562 * 23 9 7 38 38 H 1.09001 * 117.50103 * 107.50477 * 24 23 9 39 39 H 1.09004 * 117.49957 * 252.51980 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5454 2.0183 -1.3989 5 1 1.4231 2.6662 0.6507 6 1 3.5214 1.4546 0.7483 7 6 2.0045 -1.1940 -0.0005 8 1 1.4693 -2.1267 0.1010 9 6 3.5048 -1.1980 -0.1426 10 6 4.0463 -0.5938 -1.4398 11 7 3.1763 -0.9781 -2.5594 12 6 3.7153 -0.4908 -3.8362 13 1 4.2132 0.4661 -3.6789 14 6 4.7210 -1.5047 -4.3853 15 8 4.0447 -2.7234 -4.7009 16 6 2.5895 -0.3153 -4.8225 17 6 1.5569 -1.2335 -4.8625 18 6 0.5211 -1.0704 -5.7627 19 6 0.5233 0.0072 -6.6321 20 9 -0.4860 0.1646 -7.5163 21 6 1.5610 0.9231 -6.5950 22 6 2.5929 0.7611 -5.6900 23 6 4.3352 -1.0039 1.1277 24 6 4.2691 -2.3791 0.4604 25 1 -0.4850 0.8401 0.0004 26 1 4.0685 0.4925 -1.3531 27 1 5.0553 -0.9647 -1.6198 28 1 3.0377 -1.9772 -2.5833 29 1 5.1863 -1.1038 -5.2857 30 1 5.4879 -1.6984 -3.6354 31 1 4.6222 -3.4132 -5.0555 32 1 1.5575 -2.0763 -4.1873 33 1 -0.2881 -1.7853 -5.7905 34 1 1.5640 1.7639 -7.2729 35 1 3.4022 1.4756 -5.6606 36 1 5.2673 -0.4458 1.0392 37 1 3.7965 -0.8738 2.0662 38 1 5.1578 -2.7259 -0.0670 39 1 3.6865 -3.1533 0.9597 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602808549.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:37 Heat of formation + Delta-G solvation = -57.896170 kcal Electronic energy + Delta-G solvation = -22145.644979 eV Core-core repulsion = 18774.744288 eV Total energy + Delta-G solvation = -3370.900692 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.85585 -40.49139 -38.96012 -37.81393 -35.55562 -34.08198 -32.12278 -31.80756 -28.91411 -27.60447 -25.91486 -24.16775 -23.64567 -23.09158 -21.41813 -20.76662 -18.78701 -18.44651 -18.01547 -17.13997 -16.97976 -16.74065 -16.55583 -16.02898 -15.73549 -15.37527 -15.00111 -14.81909 -14.60751 -14.37623 -14.24714 -13.98248 -13.83733 -13.30721 -13.11365 -12.80915 -12.51216 -12.44121 -12.25462 -12.03881 -11.89934 -11.80723 -11.27982 -10.93273 -10.80282 -10.47772 -10.17473 -9.94374 -9.43069 -8.92706 -8.11890 -6.11370 0.25556 0.41408 1.43189 1.45449 1.55075 2.52058 2.69256 3.07749 3.31201 3.36249 3.47869 3.65267 3.83267 3.89793 4.02536 4.19445 4.26993 4.37455 4.46673 4.47602 4.52069 4.54166 4.62195 4.70258 4.77996 4.93813 4.99359 5.06069 5.13832 5.17067 5.22975 5.35051 5.42687 5.56358 5.70956 5.84692 6.02805 6.41678 6.49417 6.75049 6.90636 6.99291 7.55925 9.04489 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016847 B = 0.006375 C = 0.005368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.631261 B = 4390.773681 C = 5215.037779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.040 3.960 3 Si 0.933 3.067 4 H -0.268 1.268 5 H -0.315 1.315 6 H -0.235 1.235 7 C -0.453 4.453 8 H 0.023 0.977 9 C -0.027 4.027 10 C 0.103 3.897 11 N -0.670 5.670 12 C 0.118 3.882 13 H 0.100 0.900 14 C 0.060 3.940 15 O -0.580 6.580 16 C -0.075 4.075 17 C -0.052 4.052 18 C -0.172 4.172 19 C 0.070 3.930 20 F -0.151 7.151 21 C -0.157 4.157 22 C -0.095 4.095 23 C -0.192 4.192 24 C -0.168 4.168 25 H 0.256 0.744 26 H 0.047 0.953 27 H 0.042 0.958 28 H 0.348 0.652 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.394 0.606 32 H 0.121 0.879 33 H 0.134 0.866 34 H 0.155 0.845 35 H 0.156 0.844 36 H 0.095 0.905 37 H 0.069 0.931 38 H 0.103 0.897 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.122 -0.294 -12.982 18.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.157 4.157 3 Si 0.761 3.239 4 H -0.194 1.194 5 H -0.244 1.244 6 H -0.158 1.158 7 C -0.491 4.491 8 H 0.041 0.959 9 C -0.028 4.028 10 C -0.026 4.026 11 N -0.301 5.301 12 C 0.008 3.992 13 H 0.118 0.882 14 C -0.019 4.019 15 O -0.388 6.388 16 C -0.076 4.076 17 C -0.070 4.070 18 C -0.190 4.190 19 C 0.051 3.949 20 F -0.130 7.130 21 C -0.176 4.176 22 C -0.113 4.113 23 C -0.230 4.230 24 C -0.205 4.205 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.168 0.832 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.243 0.757 32 H 0.139 0.861 33 H 0.152 0.848 34 H 0.173 0.827 35 H 0.174 0.826 36 H 0.113 0.887 37 H 0.088 0.912 38 H 0.121 0.879 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 12.014 0.670 -12.702 17.497 hybrid contribution 0.370 -0.262 -0.114 0.467 sum 12.384 0.408 -12.817 17.827 Atomic orbital electron populations 1.70063 1.08451 1.27147 1.53713 1.25452 0.94627 1.02121 0.93526 0.86023 0.79936 0.79288 0.78698 1.19366 1.24396 1.15806 1.20128 0.89239 0.92017 1.47673 0.95904 1.19457 0.92274 1.00068 0.91000 1.21508 0.92895 0.98194 0.90026 1.60184 1.48948 1.20541 1.00423 1.20745 0.91732 0.98410 0.88321 0.88182 1.22754 0.93733 0.85776 0.99673 1.86502 1.40257 1.24991 1.87022 1.19939 0.96533 0.94794 0.96316 1.20779 0.92152 0.98801 0.95314 1.21287 1.01128 0.98926 0.97690 1.17886 0.87530 0.97922 0.91568 1.91440 1.59035 1.95636 1.66879 1.21262 0.94066 1.00128 1.02137 1.21149 0.98787 0.97188 0.94219 1.23045 1.01717 1.00251 0.97970 1.22866 1.01809 0.91064 1.04764 0.93482 0.93454 0.93974 0.83152 0.91452 0.92477 0.75703 0.86148 0.84832 0.82687 0.82591 0.88667 0.91219 0.87892 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.74 13.96 21.45 0.30 -60.44 16 2 C 0.04 2.30 5.46 84.66 0.46 2.76 16 3 Si 0.93 45.18 24.78 68.60 1.70 46.88 16 4 H -0.27 -12.53 6.99 99.48 0.70 -11.84 16 5 H -0.32 -15.86 7.11 99.48 0.71 -15.15 16 6 H -0.23 -10.19 6.14 99.48 0.61 -9.58 16 7 C -0.45 -25.10 8.72 25.60 0.22 -24.88 16 8 H 0.02 1.44 8.06 -2.91 -0.02 1.42 16 9 C -0.03 -1.15 1.13 -52.91 -0.06 -1.21 16 10 C 0.10 3.76 4.74 86.30 0.41 4.17 16 11 N -0.67 -24.79 4.99 -495.43 -2.47 -27.26 16 12 C 0.12 3.37 2.65 44.17 0.12 3.49 16 13 H 0.10 2.62 7.71 -2.38 -0.02 2.61 16 14 C 0.06 1.26 6.70 71.98 0.48 1.74 16 15 O -0.58 -12.94 11.55 -148.98 -1.72 -14.66 16 16 C -0.07 -2.30 4.82 -19.86 -0.10 -2.40 16 17 C -0.05 -1.78 8.34 22.26 0.19 -1.60 16 18 C -0.17 -5.62 10.03 22.31 0.22 -5.40 16 19 C 0.07 2.16 7.30 22.37 0.16 2.32 16 20 F -0.15 -4.66 17.27 44.97 0.78 -3.88 16 21 C -0.16 -4.16 10.03 22.31 0.22 -3.93 16 22 C -0.10 -2.48 9.67 22.26 0.22 -2.27 16 23 C -0.19 -7.34 8.58 30.59 0.26 -7.08 16 24 C -0.17 -6.12 9.88 30.61 0.30 -5.82 16 25 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 26 H 0.05 1.82 5.21 -2.39 -0.01 1.80 16 27 H 0.04 1.26 7.16 -2.39 -0.02 1.24 16 28 H 0.35 13.37 7.26 -89.70 -0.65 12.71 16 29 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.06 1.09 7.38 -2.39 -0.02 1.07 16 31 H 0.39 5.03 9.12 -74.06 -0.68 4.35 16 32 H 0.12 4.48 7.07 -2.91 -0.02 4.46 16 33 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 34 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 35 H 0.16 3.01 8.04 -2.91 -0.02 2.98 16 36 H 0.10 3.10 8.14 -2.39 -0.02 3.09 16 37 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 38 H 0.10 3.04 8.08 -2.39 -0.02 3.02 16 39 H 0.07 2.74 8.14 -2.38 -0.02 2.72 16 Total: -1.00 -69.84 322.92 1.34 -68.50 By element: Atomic # 1 Polarization: 31.34 SS G_CDS: -0.36 Total: 30.98 kcal Atomic # 6 Polarization: -43.22 SS G_CDS: 3.12 Total: -40.11 kcal Atomic # 7 Polarization: -85.53 SS G_CDS: -2.17 Total: -87.70 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -1.72 Total: -14.66 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 0.78 Total: -3.88 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.70 Total: 46.88 kcal Total: -69.84 1.34 -68.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602808549.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.604 kcal (2) G-P(sol) polarization free energy of solvation -69.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds