Wall clock time and date at job start Wed Apr 15 2020 11:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86799 * 120.00169 * 2 1 4 4 H 1.48493 * 109.47272 * 240.00201 * 3 2 1 5 5 H 1.48507 * 109.46863 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47329 * 119.99477 * 3 2 1 7 7 C 1.38653 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99843 * 180.02562 * 7 2 1 9 9 O 1.34827 * 120.00227 * 0.02562 * 7 2 1 10 10 C 1.35753 * 117.00007 * 185.04846 * 9 7 2 11 11 C 1.38878 * 120.06696 * 354.47169 * 10 9 7 12 12 C 1.38099 * 119.92575 * 179.97438 * 11 10 9 13 13 C 1.38303 * 120.07177 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.92942 * 180.02562 * 13 12 11 15 15 N 1.46902 * 109.47040 * 90.00001 * 14 13 12 16 16 C 1.46852 * 110.99671 * 169.99746 * 15 14 13 17 17 C 1.53042 * 109.51839 * 174.16007 * 16 15 14 18 18 C 1.53116 * 109.27913 * 59.18083 * 17 16 15 19 19 F 1.39898 * 109.52243 * 182.43854 * 18 17 16 20 20 C 1.53113 * 109.16128 * 302.34027 * 18 17 16 21 21 C 1.46844 * 111.00072 * 45.79014 * 15 14 13 22 22 C 1.38298 * 120.13907 * 0.27358 * 13 12 11 23 23 C 1.38102 * 120.06555 * 359.49213 * 22 13 12 24 24 H 0.97001 * 119.99812 * 0.02562 * 1 2 3 25 25 H 1.07993 * 120.03958 * 359.94648 * 11 10 9 26 26 H 1.08002 * 119.96567 * 179.97438 * 12 11 10 27 27 H 1.08997 * 109.47529 * 329.99701 * 14 13 12 28 28 H 1.09003 * 109.46597 * 209.99448 * 14 13 12 29 29 H 1.08997 * 109.46569 * 294.17233 * 16 15 14 30 30 H 1.08993 * 109.46280 * 54.14675 * 16 15 14 31 31 H 1.09002 * 109.49705 * 179.11952 * 17 16 15 32 32 H 1.09001 * 109.50364 * 299.23279 * 17 16 15 33 33 H 1.09005 * 109.52346 * 62.25149 * 18 17 16 34 34 H 1.08996 * 109.50938 * 297.71921 * 20 18 17 35 35 H 1.09002 * 109.53663 * 177.61317 * 20 18 17 36 36 H 1.08997 * 109.45945 * 305.85025 * 21 15 14 37 37 H 1.08994 * 109.46812 * 65.83418 * 21 15 14 38 38 H 1.07999 * 119.96621 * 179.72648 * 22 13 12 39 39 H 1.07999 * 120.03437 * 180.25063 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2846 2.7465 -0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0699 -3.5046 0.1075 11 6 3.4571 -3.4394 0.0950 12 6 4.2022 -4.5970 0.2046 13 6 3.5685 -5.8201 0.3272 14 6 4.3847 -7.0812 0.4471 15 7 4.6560 -7.3560 1.8644 16 6 5.2405 -8.6918 2.0390 17 6 5.6431 -8.8865 3.5026 18 6 4.4068 -8.7297 4.3922 19 9 4.7787 -8.8516 5.7353 20 6 3.7893 -7.3487 4.1556 21 6 3.4404 -7.1985 2.6731 22 6 2.1872 -5.8888 0.3347 23 6 1.4365 -4.7343 0.2304 24 1 -0.4850 0.8401 -0.0004 25 1 3.9526 -2.4846 -0.0007 26 1 5.2811 -4.5471 0.1946 27 1 5.3274 -6.9560 -0.0856 28 1 3.8310 -7.9148 0.0149 29 1 4.5070 -9.4485 1.7604 30 1 6.1211 -8.7887 1.4041 31 1 6.0625 -9.8839 3.6349 32 1 6.3869 -8.1389 3.7780 33 1 3.6787 -9.5019 4.1434 34 1 4.5038 -6.5768 4.4412 35 1 2.8843 -7.2466 4.7546 36 1 3.0137 -6.2108 2.4987 37 1 2.7154 -7.9622 2.3916 38 1 1.6952 -6.8458 0.4261 39 1 0.3579 -4.7882 0.2405 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880242151.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:43 Heat of formation + Delta-G solvation = -56.283497 kcal Electronic energy + Delta-G solvation = -21367.712436 eV Core-core repulsion = 17996.881675 eV Total energy + Delta-G solvation = -3370.830761 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -47.72394 -39.54091 -38.49917 -36.49850 -33.25701 -32.22617 -31.12378 -30.22168 -29.28184 -25.97272 -24.91770 -23.39591 -22.69427 -21.96017 -20.42994 -19.98249 -18.01046 -16.98233 -16.55770 -16.09418 -15.45510 -15.08860 -14.98534 -14.68742 -14.55279 -14.21787 -13.90156 -13.63844 -13.43788 -12.89187 -12.74402 -12.60497 -12.50168 -12.21956 -11.85951 -11.64274 -11.42555 -11.34245 -11.23052 -10.81526 -10.69538 -10.64508 -10.55135 -10.45563 -10.23659 -9.36199 -8.85417 -8.31230 -8.19982 -7.20102 -6.47572 -4.06459 2.16571 2.24046 3.12128 3.13178 3.16045 3.91231 3.95272 4.35973 4.45540 4.50381 4.60803 4.77204 4.97151 5.06835 5.12893 5.22861 5.31062 5.32531 5.36188 5.48766 5.59027 5.68365 5.70767 5.76057 5.83599 5.87141 5.91005 6.12569 6.16317 6.17911 6.39893 6.65559 6.86570 7.00034 7.03915 7.12698 7.24023 7.37235 7.41572 7.78429 7.97382 8.98018 9.67321 10.70238 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.027291 B = 0.003491 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.751205 B = 8017.738618 C = 8277.701682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.393 4.393 8 H 0.092 0.908 9 O -0.177 6.177 10 C 0.156 3.844 11 C -0.236 4.236 12 C -0.048 4.048 13 C -0.189 4.189 14 C 0.115 3.885 15 N -0.535 5.535 16 C 0.057 3.943 17 C -0.140 4.140 18 C 0.089 3.911 19 F -0.217 7.217 20 C -0.142 4.142 21 C 0.055 3.945 22 C -0.069 4.069 23 C -0.194 4.194 24 H 0.271 0.729 25 H 0.127 0.873 26 H 0.108 0.892 27 H 0.075 0.925 28 H 0.033 0.967 29 H 0.033 0.967 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.031 0.969 38 H 0.106 0.894 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.825 -15.352 4.029 18.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.164 4.164 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.469 4.469 8 H 0.109 0.891 9 O -0.080 6.080 10 C 0.102 3.898 11 C -0.255 4.255 12 C -0.067 4.067 13 C -0.190 4.190 14 C -0.012 4.012 15 N -0.260 5.260 16 C -0.071 4.071 17 C -0.179 4.179 18 C 0.053 3.947 19 F -0.198 7.198 20 C -0.181 4.181 21 C -0.073 4.073 22 C -0.087 4.087 23 C -0.213 4.213 24 H 0.081 0.919 25 H 0.144 0.856 26 H 0.126 0.874 27 H 0.094 0.906 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.118 0.882 37 H 0.050 0.950 38 H 0.125 0.875 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.733 -14.790 4.197 17.681 hybrid contribution -0.085 0.230 -0.202 0.317 sum 8.649 -14.560 3.995 17.400 Atomic orbital electron populations 1.70029 1.05985 1.27844 1.45845 1.25293 0.95839 0.98858 0.96458 0.85782 0.78719 0.79720 0.79239 1.19474 1.20258 1.19437 1.21294 0.91812 0.80802 1.52986 0.89051 1.83974 1.34420 1.11501 1.78084 1.19399 0.90328 0.88020 0.92039 1.21166 0.93756 0.98979 1.11606 1.20578 0.98405 0.91479 0.96267 1.19071 0.93112 0.93988 1.12861 1.20802 0.98552 0.94478 0.87342 1.62080 1.28564 1.26722 1.08659 1.22000 0.99547 0.89738 0.95805 1.22167 0.97847 1.02975 0.94868 1.21674 0.97226 0.99148 0.76678 1.92799 1.93228 1.97336 1.36435 1.22209 1.02051 0.96334 0.97462 1.22142 0.90828 1.03151 0.91176 1.20492 0.92944 0.96585 0.98718 1.20170 0.99497 0.90323 1.11317 0.91928 0.85569 0.87375 0.90636 0.94918 0.94861 0.90165 0.90695 0.89831 0.90489 0.89852 0.90487 0.88192 0.95040 0.87546 0.86593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.11 13.67 55.48 0.76 -24.35 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.35 29.55 -169.99 -5.02 15.33 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.39 -10.88 9.49 30.89 0.29 -10.58 16 8 H 0.09 2.34 5.20 -52.49 -0.27 2.06 16 9 O -0.18 -4.99 9.76 0.05 0.00 -4.99 16 10 C 0.16 3.70 6.65 -39.11 -0.26 3.44 16 11 C -0.24 -5.01 9.17 -39.40 -0.36 -5.37 16 12 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 13 C -0.19 -3.06 4.12 -104.58 -0.43 -3.49 16 14 C 0.11 1.48 5.43 -4.97 -0.03 1.45 16 15 N -0.54 -6.58 4.80 -236.11 -1.13 -7.71 16 16 C 0.06 0.56 5.42 -3.83 -0.02 0.53 16 17 C -0.14 -1.32 5.83 -26.65 -0.16 -1.47 16 18 C 0.09 0.93 3.95 -26.61 -0.11 0.82 16 19 F -0.22 -2.68 17.09 2.25 0.04 -2.64 16 20 C -0.14 -1.63 5.83 -26.65 -0.16 -1.79 16 21 C 0.05 0.69 4.58 -3.83 -0.02 0.67 16 22 C -0.07 -1.16 7.80 -39.61 -0.31 -1.47 16 23 C -0.19 -3.96 9.99 -39.39 -0.39 -4.35 16 24 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 25 H 0.13 2.71 5.64 -52.49 -0.30 2.41 16 26 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 27 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 28 H 0.03 0.39 8.02 -51.93 -0.42 -0.02 16 29 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.70 8.12 -51.93 -0.42 0.28 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.10 1.50 5.65 -51.93 -0.29 1.21 16 37 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 319.83 15.07 4.82 4.82 Total: -1.00 -29.60 319.83 -8.45 -38.05 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -5.48 Total: 3.36 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: -2.42 Total: -21.87 kcal Atomic # 7 Polarization: -31.69 SS G_CDS: -0.37 Total: -32.06 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: 0.00 Total: -4.99 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.04 Total: -2.64 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.60 -8.45 -38.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880242151.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.235 kcal (2) G-P(sol) polarization free energy of solvation -29.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds