Wall clock time and date at job start Wed Apr 15 2020 11:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86799 * 120.00169 * 2 1 4 4 H 1.48493 * 109.47272 * 240.00201 * 3 2 1 5 5 H 1.48507 * 109.46863 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47329 * 119.99477 * 3 2 1 7 7 C 1.38653 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99843 * 180.02562 * 7 2 1 9 9 O 1.34827 * 120.00227 * 0.02562 * 7 2 1 10 10 C 1.35753 * 117.00007 * 185.04846 * 9 7 2 11 11 C 1.38878 * 120.06696 * 354.47169 * 10 9 7 12 12 C 1.38099 * 119.92575 * 179.97438 * 11 10 9 13 13 C 1.38303 * 120.07177 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.92942 * 180.02562 * 13 12 11 15 15 N 1.46902 * 109.47040 * 90.00001 * 14 13 12 16 16 C 1.46852 * 110.99671 * 169.99746 * 15 14 13 17 17 C 1.53042 * 109.51839 * 174.16007 * 16 15 14 18 18 C 1.53116 * 109.27913 * 59.18083 * 17 16 15 19 19 F 1.39898 * 109.52243 * 182.43854 * 18 17 16 20 20 C 1.53113 * 109.16128 * 302.34027 * 18 17 16 21 21 C 1.46844 * 111.00072 * 45.79014 * 15 14 13 22 22 C 1.38298 * 120.13907 * 0.27358 * 13 12 11 23 23 C 1.38102 * 120.06555 * 359.49213 * 22 13 12 24 24 H 0.97001 * 119.99812 * 0.02562 * 1 2 3 25 25 H 1.07993 * 120.03958 * 359.94648 * 11 10 9 26 26 H 1.08002 * 119.96567 * 179.97438 * 12 11 10 27 27 H 1.08997 * 109.47529 * 329.99701 * 14 13 12 28 28 H 1.09003 * 109.46597 * 209.99448 * 14 13 12 29 29 H 1.08997 * 109.46569 * 294.17233 * 16 15 14 30 30 H 1.08993 * 109.46280 * 54.14675 * 16 15 14 31 31 H 1.09002 * 109.49705 * 179.11952 * 17 16 15 32 32 H 1.09001 * 109.50364 * 299.23279 * 17 16 15 33 33 H 1.09005 * 109.52346 * 62.25149 * 18 17 16 34 34 H 1.08996 * 109.50938 * 297.71921 * 20 18 17 35 35 H 1.09002 * 109.53663 * 177.61317 * 20 18 17 36 36 H 1.08997 * 109.45945 * 305.85025 * 21 15 14 37 37 H 1.08994 * 109.46812 * 65.83418 * 21 15 14 38 38 H 1.07999 * 119.96621 * 179.72648 * 22 13 12 39 39 H 1.07999 * 120.03437 * 180.25063 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2846 2.7465 -0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0699 -3.5046 0.1075 11 6 3.4571 -3.4394 0.0950 12 6 4.2022 -4.5970 0.2046 13 6 3.5685 -5.8201 0.3272 14 6 4.3847 -7.0812 0.4471 15 7 4.6560 -7.3560 1.8644 16 6 5.2405 -8.6918 2.0390 17 6 5.6431 -8.8865 3.5026 18 6 4.4068 -8.7297 4.3922 19 9 4.7787 -8.8516 5.7353 20 6 3.7893 -7.3487 4.1556 21 6 3.4404 -7.1985 2.6731 22 6 2.1872 -5.8888 0.3347 23 6 1.4365 -4.7343 0.2304 24 1 -0.4850 0.8401 -0.0004 25 1 3.9526 -2.4846 -0.0007 26 1 5.2811 -4.5471 0.1946 27 1 5.3274 -6.9560 -0.0856 28 1 3.8310 -7.9148 0.0149 29 1 4.5070 -9.4485 1.7604 30 1 6.1211 -8.7887 1.4041 31 1 6.0625 -9.8839 3.6349 32 1 6.3869 -8.1389 3.7780 33 1 3.6787 -9.5019 4.1434 34 1 4.5038 -6.5768 4.4412 35 1 2.8843 -7.2466 4.7546 36 1 3.0137 -6.2108 2.4987 37 1 2.7154 -7.9622 2.3916 38 1 1.6952 -6.8458 0.4261 39 1 0.3579 -4.7882 0.2405 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880242151.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:42 Heat of formation + Delta-G solvation = -74.273187 kcal Electronic energy + Delta-G solvation = -21368.492528 eV Core-core repulsion = 17996.881675 eV Total energy + Delta-G solvation = -3371.610852 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.61312 -40.97900 -39.80056 -38.04267 -34.56778 -33.95292 -32.04708 -31.74469 -30.63903 -27.65240 -26.36193 -24.31879 -23.76251 -23.50857 -21.81650 -20.90978 -19.83144 -18.81580 -17.47178 -16.96458 -16.61144 -16.46753 -16.19774 -15.96581 -15.85986 -15.50531 -15.34336 -15.13291 -14.89127 -14.39309 -14.14070 -13.68999 -13.51978 -13.49101 -13.14997 -12.89593 -12.87734 -12.48167 -12.36399 -12.21532 -12.16839 -12.12024 -11.94199 -11.38707 -11.17715 -11.16265 -10.77625 -9.75539 -9.26769 -8.84471 -8.47269 -6.15386 0.60169 0.67556 1.34958 1.45422 1.51031 2.17921 2.73500 3.02677 3.28866 3.52423 3.58239 3.61551 3.70610 3.95363 4.00024 4.08122 4.18472 4.24503 4.36057 4.48187 4.52064 4.60380 4.67488 4.71726 4.80532 4.87285 4.91292 4.97428 5.08277 5.09881 5.13480 5.16833 5.30039 5.32818 5.56644 5.72705 5.81724 6.03040 6.11779 6.18401 6.27839 6.97602 7.78473 8.75749 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.027291 B = 0.003491 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.751205 B = 8017.738618 C = 8277.701682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.022 4.022 3 Si 1.017 2.983 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.258 1.258 7 C -0.415 4.415 8 H 0.101 0.899 9 O -0.233 6.233 10 C 0.115 3.885 11 C -0.245 4.245 12 C -0.050 4.050 13 C -0.159 4.159 14 C 0.117 3.883 15 N -0.547 5.547 16 C 0.059 3.941 17 C -0.136 4.136 18 C 0.087 3.913 19 F -0.230 7.230 20 C -0.141 4.141 21 C 0.058 3.942 22 C -0.057 4.057 23 C -0.205 4.205 24 H 0.273 0.727 25 H 0.116 0.884 26 H 0.137 0.863 27 H 0.092 0.908 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.046 0.954 38 H 0.143 0.857 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.288 -18.172 4.044 21.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.219 4.219 3 Si 0.836 3.164 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.183 1.183 7 C -0.491 4.491 8 H 0.118 0.882 9 O -0.140 6.140 10 C 0.064 3.936 11 C -0.264 4.264 12 C -0.069 4.069 13 C -0.160 4.160 14 C -0.010 4.010 15 N -0.273 5.273 16 C -0.069 4.069 17 C -0.174 4.174 18 C 0.051 3.949 19 F -0.211 7.211 20 C -0.179 4.179 21 C -0.070 4.070 22 C -0.075 4.075 23 C -0.224 4.224 24 H 0.082 0.918 25 H 0.134 0.866 26 H 0.154 0.846 27 H 0.111 0.889 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.090 0.910 33 H 0.114 0.886 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.161 0.839 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 11.236 -17.674 4.216 21.364 hybrid contribution -0.720 0.709 -0.147 1.021 sum 10.516 -16.966 4.069 20.371 Atomic orbital electron populations 1.70177 1.08012 1.28856 1.48869 1.26571 0.96831 1.02701 0.95839 0.84671 0.77426 0.74351 0.79932 1.18089 1.19588 1.18263 1.21777 0.92494 0.81498 1.53290 0.88186 1.83936 1.35994 1.12624 1.81411 1.19949 0.91599 0.87956 0.94085 1.21252 0.93086 1.00062 1.12001 1.20908 0.99720 0.90859 0.95381 1.19584 0.93222 0.95139 1.08031 1.20850 0.98986 0.92844 0.88299 1.62038 1.28336 1.29031 1.07878 1.22082 1.00335 0.88330 0.96105 1.22149 0.96977 1.03833 0.94460 1.21808 0.98240 0.98674 0.76166 1.92777 1.93385 1.97330 1.37593 1.22162 1.01869 0.96916 0.97003 1.22030 0.91346 1.01824 0.91825 1.20860 0.93336 0.96670 0.96656 1.20422 0.99863 0.90579 1.11515 0.91837 0.86629 0.84557 0.88937 0.92772 0.93327 0.88570 0.88608 0.91006 0.88559 0.91518 0.90333 0.91239 0.93575 0.83902 0.87031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.80 13.67 21.61 0.30 -56.50 16 2 C -0.02 -1.25 5.49 84.83 0.47 -0.79 16 3 Si 1.02 43.04 29.55 68.60 2.03 45.07 16 4 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 7 C -0.41 -24.29 9.49 67.92 0.64 -23.65 16 8 H 0.10 5.39 5.20 -2.91 -0.02 5.37 16 9 O -0.23 -14.09 9.76 -22.74 -0.22 -14.31 16 10 C 0.11 5.67 6.65 22.58 0.15 5.82 16 11 C -0.24 -10.61 9.17 22.39 0.21 -10.40 16 12 C -0.05 -1.70 9.69 22.25 0.22 -1.48 16 13 C -0.16 -4.64 4.12 -19.83 -0.08 -4.72 16 14 C 0.12 2.43 5.43 85.56 0.46 2.90 16 15 N -0.55 -11.17 4.80 -900.92 -4.32 -15.49 16 16 C 0.06 0.85 5.42 86.33 0.47 1.32 16 17 C -0.14 -2.03 5.83 30.65 0.18 -1.85 16 18 C 0.09 1.55 3.95 30.67 0.12 1.67 16 19 F -0.23 -5.20 17.09 44.97 0.77 -4.43 16 20 C -0.14 -2.96 5.83 30.65 0.18 -2.79 16 21 C 0.06 1.27 4.58 86.33 0.40 1.67 16 22 C -0.06 -1.79 7.80 22.25 0.17 -1.62 16 23 C -0.20 -8.50 9.99 22.39 0.22 -8.28 16 24 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 25 H 0.12 5.15 5.64 -2.91 -0.02 5.14 16 26 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 27 H 0.09 1.72 8.08 -2.39 -0.02 1.70 16 28 H 0.05 0.96 8.02 -2.39 -0.02 0.94 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.10 1.14 8.12 -2.39 -0.02 1.12 16 31 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.07 1.96 5.65 -2.39 -0.01 1.95 16 37 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 39 H 0.11 4.62 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -69.64 319.83 3.39 -66.25 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 1.04 Total: 21.62 kcal Atomic # 6 Polarization: -46.02 SS G_CDS: 3.80 Total: -42.21 kcal Atomic # 7 Polarization: -67.97 SS G_CDS: -4.03 Total: -72.00 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.22 Total: -14.31 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 0.77 Total: -4.43 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -69.64 3.39 -66.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880242151.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.019 kcal (2) G-P(sol) polarization free energy of solvation -69.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds