Wall clock time and date at job start Wed Apr 15 2020 11:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86796 * 120.00144 * 2 1 4 4 H 1.48511 * 109.46705 * 270.00117 * 3 2 1 5 5 H 1.48492 * 109.47036 * 29.99788 * 3 2 1 6 6 H 1.48498 * 109.47318 * 150.00462 * 3 2 1 7 7 C 1.38653 * 119.99684 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00392 * 0.02562 * 7 2 1 9 9 O 1.34828 * 119.99807 * 179.97438 * 7 2 1 10 10 C 1.35758 * 116.99987 * 185.06038 * 9 7 2 11 11 C 1.38875 * 120.06735 * 354.46176 * 10 9 7 12 12 C 1.38100 * 119.92866 * 180.02562 * 11 10 9 13 13 C 1.38294 * 120.07005 * 0.02671 * 12 11 10 14 14 C 1.50703 * 119.93393 * 179.97438 * 13 12 11 15 15 N 1.46900 * 109.46978 * 89.99758 * 14 13 12 16 16 C 1.47847 * 111.00137 * 49.16001 * 15 14 13 17 17 C 1.54907 * 104.79721 * 146.36169 * 16 15 14 18 18 C 1.55138 * 101.65223 * 322.93075 * 17 16 15 19 19 H 1.08999 * 110.71198 * 277.27021 * 18 17 16 20 20 C 1.53000 * 110.70601 * 154.21024 * 18 17 16 21 21 F 1.39898 * 109.47723 * 181.45472 * 20 18 17 22 22 C 1.47443 * 111.00087 * 170.00415 * 15 14 13 23 23 C 1.38305 * 120.13940 * 0.25025 * 13 12 11 24 24 C 1.38098 * 120.06653 * 359.45406 * 23 13 12 25 25 H 0.96996 * 119.99635 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.03547 * 0.02562 * 11 10 9 27 27 H 1.08007 * 119.96569 * 180.02562 * 12 11 10 28 28 H 1.09003 * 109.47103 * 330.00297 * 14 13 12 29 29 H 1.08990 * 109.47405 * 210.00082 * 14 13 12 30 30 H 1.09002 * 110.36808 * 27.53355 * 16 15 14 31 31 H 1.08997 * 110.37269 * 265.19597 * 16 15 14 32 32 H 1.09007 * 110.98819 * 204.84118 * 17 16 15 33 33 H 1.08993 * 110.99286 * 81.02626 * 17 16 15 34 34 H 1.08997 * 109.47292 * 301.45912 * 20 18 17 35 35 H 1.09006 * 109.47137 * 61.45400 * 20 18 17 36 36 H 1.08994 * 109.89548 * 117.33871 * 22 15 14 37 37 H 1.09006 * 110.02161 * 356.22163 * 22 15 14 38 38 H 1.08001 * 119.96596 * 179.70913 * 23 13 12 39 39 H 1.07997 * 120.03442 * 180.27774 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0463 -1.4002 5 1 1.4471 2.6526 0.7000 6 1 3.5472 1.4401 0.6999 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1362 0.0005 9 8 3.3571 -1.2008 0.0000 10 6 3.9733 -2.4058 -0.1061 11 6 3.2233 -3.5745 -0.0921 12 6 3.8532 -4.7988 -0.1997 13 6 5.2294 -4.8617 -0.3208 14 6 5.9137 -6.1994 -0.4374 15 7 6.0174 -6.5744 -1.8540 16 6 6.5687 -5.4626 -2.6575 17 6 7.3998 -6.1515 -3.7685 18 6 8.0120 -7.3534 -3.0021 19 1 8.9046 -7.0481 -2.4561 20 6 8.3336 -8.5002 -3.9625 21 9 8.8525 -9.5809 -3.2414 22 6 6.8856 -7.7537 -2.0262 23 6 5.9796 -3.6999 -0.3293 24 6 5.3552 -2.4723 -0.2282 25 1 -0.4849 0.8400 0.0004 26 1 2.1486 -3.5260 0.0029 27 1 3.2705 -5.7081 -0.1893 28 1 5.3333 -6.9521 0.0961 29 1 6.9118 -6.1359 -0.0044 30 1 7.2085 -4.8304 -2.0418 31 1 5.7621 -4.8750 -3.0960 32 1 8.1800 -5.4875 -4.1410 33 1 6.7585 -6.4923 -4.5812 34 1 7.4236 -8.8098 -4.4764 35 1 9.0685 -8.1657 -4.6948 36 1 6.3102 -8.5802 -2.4430 37 1 7.3127 -8.0460 -1.0668 38 1 7.0546 -3.7525 -0.4193 39 1 5.9411 -1.5652 -0.2394 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880294339.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:44 Heat of formation + Delta-G solvation = -51.556694 kcal Electronic energy + Delta-G solvation = -21122.701801 eV Core-core repulsion = 17752.076010 eV Total energy + Delta-G solvation = -3370.625791 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -47.86062 -39.69009 -38.77868 -36.69872 -33.34530 -32.34919 -30.38149 -29.73527 -29.42257 -26.24001 -25.18612 -24.03021 -22.27864 -21.21009 -20.62575 -20.14181 -17.93236 -17.29973 -16.82912 -16.11722 -15.84948 -15.51381 -14.96991 -14.81541 -14.34453 -13.98630 -13.82236 -13.73165 -13.63670 -13.16736 -12.75291 -12.63079 -12.41199 -12.20397 -11.89894 -11.70926 -11.44052 -11.25834 -11.15294 -10.98609 -10.89019 -10.70928 -10.66074 -10.55568 -10.16079 -9.39883 -8.88655 -8.30214 -8.24835 -7.33541 -6.43351 -4.10007 2.10372 2.15776 3.20394 3.24068 3.38528 3.97972 4.16400 4.21905 4.22119 4.41884 4.57362 4.69531 4.82703 4.88506 5.08682 5.12084 5.20388 5.23064 5.25840 5.36755 5.39188 5.58030 5.63544 5.65697 5.75356 5.82596 5.89423 6.01461 6.08880 6.12136 6.32821 6.54438 6.76539 6.90565 7.04676 7.10806 7.24459 7.31845 7.59193 7.78713 8.02065 8.91845 9.54012 10.64318 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.041568 B = 0.003152 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.426514 B = 8882.415402 C = 9068.127323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.390 4.390 8 H 0.107 0.893 9 O -0.217 6.217 10 C 0.162 3.838 11 C -0.222 4.222 12 C -0.051 4.051 13 C -0.178 4.178 14 C 0.106 3.894 15 N -0.523 5.523 16 C 0.046 3.954 17 C -0.124 4.124 18 C -0.145 4.145 19 H 0.085 0.915 20 C 0.073 3.927 21 F -0.220 7.220 22 C 0.047 3.953 23 C -0.070 4.070 24 C -0.193 4.193 25 H 0.280 0.720 26 H 0.133 0.867 27 H 0.111 0.889 28 H 0.075 0.925 29 H 0.034 0.966 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.056 0.944 38 H 0.108 0.892 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.334 -13.117 -6.067 21.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.465 4.465 8 H 0.124 0.876 9 O -0.122 6.122 10 C 0.109 3.891 11 C -0.241 4.241 12 C -0.069 4.069 13 C -0.179 4.179 14 C -0.020 4.020 15 N -0.248 5.248 16 C -0.081 4.081 17 C -0.162 4.162 18 C -0.165 4.165 19 H 0.103 0.897 20 C 0.018 3.982 21 F -0.201 7.201 22 C -0.081 4.081 23 C -0.089 4.089 24 C -0.213 4.213 25 H 0.090 0.910 26 H 0.151 0.849 27 H 0.129 0.871 28 H 0.094 0.906 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.126 0.874 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 14.704 -12.891 -6.173 20.506 hybrid contribution 0.911 0.846 0.346 1.291 sum 15.614 -12.045 -5.827 20.563 Atomic orbital electron populations 1.69648 1.05577 1.28510 1.47965 1.24471 0.95024 0.98830 0.95672 0.86180 0.80317 0.81438 0.78955 1.19877 1.20774 1.18386 1.20778 0.76872 0.96658 1.52203 0.87585 1.83570 1.22647 1.25802 1.80206 1.19132 0.91677 0.85507 0.92744 1.21287 1.01146 0.91850 1.09834 1.20636 0.93358 0.96703 0.96237 1.19167 0.93890 0.93313 1.11497 1.21029 0.98100 0.94822 0.88098 1.63786 1.47747 1.04310 1.08910 1.23054 0.97703 0.93588 0.93755 1.22737 0.99245 0.95876 0.98363 1.23040 0.99814 0.95946 0.97683 0.89706 1.21990 0.99549 0.83520 0.93174 1.92764 1.88928 1.57807 1.80570 1.22867 0.92117 0.94635 0.98445 1.20495 0.97940 0.91522 0.98937 1.20152 0.91990 0.97696 1.11439 0.91029 0.84949 0.87114 0.90616 0.94804 0.92868 0.89727 0.90601 0.90351 0.90378 0.90767 0.90459 0.92537 0.87387 0.86642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.34 13.96 55.48 0.77 -24.57 16 2 C 0.06 1.77 5.49 -17.51 -0.10 1.67 16 3 Si 0.91 21.55 28.62 -169.99 -4.86 16.69 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.26 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.39 -10.93 9.95 30.89 0.31 -10.62 16 8 H 0.11 3.04 5.44 -52.48 -0.29 2.76 16 9 O -0.22 -5.70 8.59 0.03 0.00 -5.70 16 10 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 11 C -0.22 -4.75 9.17 -39.40 -0.36 -5.11 16 12 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 13 C -0.18 -2.87 4.63 -104.57 -0.48 -3.35 16 14 C 0.11 1.41 5.02 -4.97 -0.02 1.39 16 15 N -0.52 -6.57 5.31 -232.69 -1.24 -7.81 16 16 C 0.05 0.55 5.35 -2.30 -0.01 0.54 16 17 C -0.12 -1.09 6.52 -24.59 -0.16 -1.25 16 18 C -0.15 -1.24 3.29 -88.80 -0.29 -1.54 16 19 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 20 C 0.07 0.54 6.85 37.16 0.25 0.80 16 21 F -0.22 -2.22 17.23 2.25 0.04 -2.18 16 22 C 0.05 0.49 6.36 -2.83 -0.02 0.47 16 23 C -0.07 -1.15 8.19 -39.61 -0.32 -1.47 16 24 C -0.19 -3.74 9.99 -39.39 -0.39 -4.14 16 25 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.13 2.99 5.64 -52.49 -0.30 2.70 16 27 H 0.11 1.79 8.06 -52.48 -0.42 1.36 16 28 H 0.08 0.97 8.08 -51.93 -0.42 0.55 16 29 H 0.03 0.42 7.90 -51.93 -0.41 0.01 16 30 H 0.05 0.64 5.71 -51.93 -0.30 0.34 16 31 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.66 8.05 -51.93 -0.42 0.24 16 34 H 0.08 0.51 8.10 -51.93 -0.42 0.09 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.79 7.80 -51.93 -0.41 0.38 16 37 H 0.06 0.58 7.50 -51.93 -0.39 0.19 16 38 H 0.11 1.48 7.12 -52.49 -0.37 1.11 16 39 H 0.12 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 320.52 15.07 4.83 4.83 Total: -1.00 -29.29 320.52 -8.09 -37.38 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -5.39 Total: 1.84 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: -2.25 Total: -20.49 kcal Atomic # 7 Polarization: -31.91 SS G_CDS: -0.46 Total: -32.37 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: 0.00 Total: -5.70 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.86 Total: 16.69 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.29 -8.09 -37.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880294339.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.173 kcal (2) G-P(sol) polarization free energy of solvation -29.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds