Wall clock time and date at job start Wed Apr 15 2020 11:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86796 * 120.00144 * 2 1 4 4 H 1.48511 * 109.46705 * 270.00117 * 3 2 1 5 5 H 1.48492 * 109.47036 * 29.99788 * 3 2 1 6 6 H 1.48498 * 109.47318 * 150.00462 * 3 2 1 7 7 C 1.38653 * 119.99684 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00392 * 0.02562 * 7 2 1 9 9 O 1.34828 * 119.99807 * 179.97438 * 7 2 1 10 10 C 1.35758 * 116.99987 * 185.06038 * 9 7 2 11 11 C 1.38875 * 120.06735 * 354.46176 * 10 9 7 12 12 C 1.38100 * 119.92866 * 180.02562 * 11 10 9 13 13 C 1.38294 * 120.07005 * 0.02671 * 12 11 10 14 14 C 1.50703 * 119.93393 * 179.97438 * 13 12 11 15 15 N 1.46900 * 109.46978 * 89.99758 * 14 13 12 16 16 C 1.47847 * 111.00137 * 49.16001 * 15 14 13 17 17 C 1.54907 * 104.79721 * 146.36169 * 16 15 14 18 18 C 1.55138 * 101.65223 * 322.93075 * 17 16 15 19 19 H 1.08999 * 110.71198 * 277.27021 * 18 17 16 20 20 C 1.53000 * 110.70601 * 154.21024 * 18 17 16 21 21 F 1.39898 * 109.47723 * 181.45472 * 20 18 17 22 22 C 1.47443 * 111.00087 * 170.00415 * 15 14 13 23 23 C 1.38305 * 120.13940 * 0.25025 * 13 12 11 24 24 C 1.38098 * 120.06653 * 359.45406 * 23 13 12 25 25 H 0.96996 * 119.99635 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.03547 * 0.02562 * 11 10 9 27 27 H 1.08007 * 119.96569 * 180.02562 * 12 11 10 28 28 H 1.09003 * 109.47103 * 330.00297 * 14 13 12 29 29 H 1.08990 * 109.47405 * 210.00082 * 14 13 12 30 30 H 1.09002 * 110.36808 * 27.53355 * 16 15 14 31 31 H 1.08997 * 110.37269 * 265.19597 * 16 15 14 32 32 H 1.09007 * 110.98819 * 204.84118 * 17 16 15 33 33 H 1.08993 * 110.99286 * 81.02626 * 17 16 15 34 34 H 1.08997 * 109.47292 * 301.45912 * 20 18 17 35 35 H 1.09006 * 109.47137 * 61.45400 * 20 18 17 36 36 H 1.08994 * 109.89548 * 117.33871 * 22 15 14 37 37 H 1.09006 * 110.02161 * 356.22163 * 22 15 14 38 38 H 1.08001 * 119.96596 * 179.70913 * 23 13 12 39 39 H 1.07997 * 120.03442 * 180.27774 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0463 -1.4002 5 1 1.4471 2.6526 0.7000 6 1 3.5472 1.4401 0.6999 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1362 0.0005 9 8 3.3571 -1.2008 0.0000 10 6 3.9733 -2.4058 -0.1061 11 6 3.2233 -3.5745 -0.0921 12 6 3.8532 -4.7988 -0.1997 13 6 5.2294 -4.8617 -0.3208 14 6 5.9137 -6.1994 -0.4374 15 7 6.0174 -6.5744 -1.8540 16 6 6.5687 -5.4626 -2.6575 17 6 7.3998 -6.1515 -3.7685 18 6 8.0120 -7.3534 -3.0021 19 1 8.9046 -7.0481 -2.4561 20 6 8.3336 -8.5002 -3.9625 21 9 8.8525 -9.5809 -3.2414 22 6 6.8856 -7.7537 -2.0262 23 6 5.9796 -3.6999 -0.3293 24 6 5.3552 -2.4723 -0.2282 25 1 -0.4849 0.8400 0.0004 26 1 2.1486 -3.5260 0.0029 27 1 3.2705 -5.7081 -0.1893 28 1 5.3333 -6.9521 0.0961 29 1 6.9118 -6.1359 -0.0044 30 1 7.2085 -4.8304 -2.0418 31 1 5.7621 -4.8750 -3.0960 32 1 8.1800 -5.4875 -4.1410 33 1 6.7585 -6.4923 -4.5812 34 1 7.4236 -8.8098 -4.4764 35 1 9.0685 -8.1657 -4.6948 36 1 6.3102 -8.5802 -2.4430 37 1 7.3127 -8.0460 -1.0668 38 1 7.0546 -3.7525 -0.4193 39 1 5.9411 -1.5652 -0.2394 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880294339.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:44 Heat of formation + Delta-G solvation = -69.259612 kcal Electronic energy + Delta-G solvation = -21123.469457 eV Core-core repulsion = 17752.076010 eV Total energy + Delta-G solvation = -3371.393447 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.52558 -41.07969 -40.04905 -38.23510 -34.63940 -34.12036 -31.89634 -30.97996 -30.34618 -27.74477 -26.49952 -25.13637 -23.80142 -22.47314 -21.45091 -21.27446 -19.84127 -19.09132 -17.63696 -16.94516 -16.69980 -16.50831 -16.35191 -16.17636 -15.73212 -15.66249 -15.27464 -14.91383 -14.87518 -14.33714 -14.21427 -14.08400 -13.91464 -13.48365 -13.03910 -12.97551 -12.59737 -12.47387 -12.36643 -12.20386 -11.99400 -11.92442 -11.82616 -11.54082 -11.49397 -11.27650 -10.90386 -9.80430 -9.27213 -8.95713 -8.50578 -6.23414 0.55613 0.60508 1.31197 1.35346 1.51835 2.27706 2.70469 2.98288 3.11609 3.28670 3.46976 3.55898 3.77176 3.99429 4.02562 4.14362 4.16504 4.25872 4.31867 4.44116 4.53424 4.56747 4.59483 4.66612 4.68691 4.83375 4.93254 4.96026 5.00866 5.06919 5.16200 5.24157 5.32186 5.37282 5.54840 5.74507 5.80628 5.90010 6.07956 6.13429 6.24231 6.83682 7.57706 8.61234 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.041568 B = 0.003152 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.426514 B = 8882.415402 C = 9068.127323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.009 3.991 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.262 1.262 7 C -0.400 4.400 8 H 0.079 0.921 9 O -0.244 6.244 10 C 0.122 3.878 11 C -0.238 4.238 12 C -0.055 4.055 13 C -0.150 4.150 14 C 0.108 3.892 15 N -0.538 5.538 16 C 0.040 3.960 17 C -0.115 4.115 18 C -0.137 4.137 19 H 0.089 0.911 20 C 0.071 3.929 21 F -0.235 7.235 22 C 0.046 3.954 23 C -0.059 4.059 24 C -0.190 4.190 25 H 0.285 0.715 26 H 0.106 0.894 27 H 0.129 0.871 28 H 0.083 0.917 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.149 0.851 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.845 -14.279 -6.856 24.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.186 1.186 7 C -0.476 4.476 8 H 0.097 0.903 9 O -0.152 6.152 10 C 0.073 3.927 11 C -0.257 4.257 12 C -0.074 4.074 13 C -0.151 4.151 14 C -0.019 4.019 15 N -0.263 5.263 16 C -0.087 4.087 17 C -0.153 4.153 18 C -0.157 4.157 19 H 0.107 0.893 20 C 0.016 3.984 21 F -0.217 7.217 22 C -0.082 4.082 23 C -0.077 4.077 24 C -0.209 4.209 25 H 0.094 0.906 26 H 0.124 0.876 27 H 0.147 0.853 28 H 0.101 0.899 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.167 0.833 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 18.245 -14.099 -6.969 24.088 hybrid contribution -0.003 0.862 0.550 1.023 sum 18.242 -13.237 -6.419 23.435 Atomic orbital electron populations 1.69735 1.06975 1.29634 1.50184 1.25302 0.95883 1.02229 0.95487 0.85195 0.78783 0.77272 0.79317 1.18994 1.19224 1.18629 1.20702 0.78147 0.96087 1.52656 0.90310 1.83512 1.21177 1.27453 1.83054 1.19670 0.93234 0.84980 0.94845 1.21268 1.00117 0.93250 1.11066 1.20864 0.94667 0.95949 0.95904 1.19613 0.93071 0.95210 1.07236 1.21048 0.98814 0.92837 0.89184 1.63708 1.49184 1.05224 1.08150 1.23061 0.97332 0.93572 0.94771 1.22690 0.99280 0.95928 0.97412 1.22974 0.99149 0.96136 0.97425 0.89270 1.22135 1.00669 0.82585 0.93031 1.92736 1.89202 1.58664 1.81049 1.22903 0.92454 0.93562 0.99262 1.20921 0.99911 0.90143 0.96764 1.20477 0.90482 0.99689 1.10262 0.90553 0.87634 0.85294 0.89876 0.92834 0.92649 0.92174 0.88787 0.89975 0.89501 0.88541 0.90469 0.92186 0.83334 0.85255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.70 13.96 21.61 0.30 -55.39 16 2 C 0.01 0.54 5.49 84.83 0.47 1.00 16 3 Si 0.97 45.51 28.62 68.60 1.96 47.47 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 5 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 6 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.40 -23.78 9.95 67.92 0.68 -23.10 16 8 H 0.08 4.94 5.44 -2.91 -0.02 4.92 16 9 O -0.24 -13.34 8.59 -22.81 -0.20 -13.53 16 10 C 0.12 5.70 6.65 22.58 0.15 5.85 16 11 C -0.24 -10.60 9.17 22.39 0.21 -10.40 16 12 C -0.06 -1.96 9.69 22.25 0.22 -1.74 16 13 C -0.15 -4.47 4.63 -19.83 -0.09 -4.56 16 14 C 0.11 2.48 5.02 85.56 0.43 2.91 16 15 N -0.54 -11.84 5.31 -890.08 -4.72 -16.57 16 16 C 0.04 0.83 5.35 86.77 0.46 1.29 16 17 C -0.12 -1.61 6.52 31.98 0.21 -1.40 16 18 C -0.14 -1.83 3.29 -9.61 -0.03 -1.87 16 19 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 20 C 0.07 0.80 6.85 71.98 0.49 1.29 16 21 F -0.24 -4.10 17.23 44.97 0.78 -3.32 16 22 C 0.05 0.79 6.36 86.65 0.55 1.34 16 23 C -0.06 -1.75 8.19 22.25 0.18 -1.57 16 24 C -0.19 -7.11 9.99 22.39 0.22 -6.88 16 25 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 26 H 0.11 5.22 5.64 -2.91 -0.02 5.21 16 27 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 28 H 0.08 1.83 8.08 -2.39 -0.02 1.81 16 29 H 0.05 1.06 7.90 -2.39 -0.02 1.05 16 30 H 0.06 1.11 5.71 -2.39 -0.01 1.09 16 31 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.08 1.11 8.05 -2.39 -0.02 1.09 16 34 H 0.09 0.84 8.10 -2.39 -0.02 0.83 16 35 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 36 H 0.08 1.36 7.80 -2.39 -0.02 1.34 16 37 H 0.06 1.01 7.50 -2.38 -0.02 0.99 16 38 H 0.15 3.29 7.12 -2.91 -0.02 3.27 16 39 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -66.85 320.52 3.31 -63.54 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 1.05 Total: 15.63 kcal Atomic # 6 Polarization: -41.97 SS G_CDS: 4.14 Total: -37.83 kcal Atomic # 7 Polarization: -67.54 SS G_CDS: -4.42 Total: -71.96 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.20 Total: -13.53 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.78 Total: -3.32 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.96 Total: 47.47 kcal Total: -66.85 3.31 -63.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880294339.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.720 kcal (2) G-P(sol) polarization free energy of solvation -66.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds