Wall clock time and date at job start Wed Apr 15 2020 11:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86803 * 119.99681 * 2 1 4 4 H 1.48491 * 109.47160 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46871 * 119.99895 * 3 2 1 6 6 H 1.48500 * 109.47284 * 239.99741 * 3 2 1 7 7 C 1.38659 * 120.00471 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00056 * 179.97438 * 7 2 1 9 9 O 1.34831 * 119.99510 * 0.02562 * 7 2 1 10 10 C 1.35747 * 116.99336 * 174.94088 * 9 7 2 11 11 C 1.38884 * 120.06573 * 185.26153 * 10 9 7 12 12 C 1.38106 * 119.92940 * 179.71857 * 11 10 9 13 13 C 1.38295 * 120.06731 * 0.53470 * 12 11 10 14 14 C 1.50698 * 119.93021 * 179.74212 * 13 12 11 15 15 N 1.46900 * 109.47360 * 270.01751 * 14 13 12 16 16 C 1.47446 * 110.99757 * 69.87445 * 15 14 13 17 17 C 1.54318 * 107.23367 * 123.25880 * 16 15 14 18 18 C 1.55133 * 103.02077 * 22.28348 * 17 16 15 19 19 H 1.09002 * 110.99521 * 82.43674 * 18 17 16 20 20 C 1.52997 * 110.99478 * 206.21820 * 18 17 16 21 21 F 1.39899 * 109.46911 * 298.54608 * 20 18 17 22 22 C 1.47845 * 111.00328 * 190.71200 * 15 14 13 23 23 C 1.38297 * 120.14023 * 359.76076 * 13 12 11 24 24 C 1.38095 * 120.07045 * 359.95954 * 23 13 12 25 25 H 0.97006 * 119.99673 * 180.02562 * 1 2 3 26 26 H 1.07995 * 120.03547 * 359.97438 * 11 10 9 27 27 H 1.07999 * 119.96276 * 180.27162 * 12 11 10 28 28 H 1.09001 * 109.47511 * 30.02062 * 14 13 12 29 29 H 1.09002 * 109.47201 * 150.01865 * 14 13 12 30 30 H 1.09006 * 109.88660 * 242.66504 * 16 15 14 31 31 H 1.09003 * 109.88996 * 3.84894 * 16 15 14 32 32 H 1.09003 * 110.70645 * 140.66601 * 17 16 15 33 33 H 1.08993 * 110.70638 * 263.72317 * 17 16 15 34 34 H 1.09006 * 109.47047 * 58.54104 * 20 18 17 35 35 H 1.08997 * 109.47861 * 178.54526 * 20 18 17 36 36 H 1.08994 * 110.37391 * 332.47328 * 22 15 14 37 37 H 1.09005 * 110.36579 * 94.80905 * 22 15 14 38 38 H 1.08003 * 119.96594 * 179.97438 * 23 13 12 39 39 H 1.08001 * 120.03823 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 1.2845 2.7464 0.0006 5 1 3.1032 1.6965 1.2126 6 1 3.1033 1.6965 -1.2125 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2007 0.0001 9 8 1.3348 -2.3684 0.0005 10 6 2.0702 -3.5045 -0.1056 11 6 1.4368 -4.7350 -0.2221 12 6 2.1878 -5.8885 -0.3358 13 6 3.5690 -5.8202 -0.3225 14 6 4.3854 -7.0813 -0.4409 15 7 4.6437 -7.6251 0.8991 16 6 3.4075 -8.1586 1.5001 17 6 3.6731 -9.6365 1.8561 18 6 5.2197 -9.6987 1.9591 19 1 5.5600 -9.3576 2.9369 20 6 5.7323 -11.1100 1.6653 21 9 5.2109 -12.0013 2.6091 22 6 5.6474 -8.7093 0.8466 23 6 4.2026 -4.5970 -0.2004 24 6 3.4574 -3.4394 -0.0922 25 1 -0.4850 -0.8401 0.0004 26 1 0.3583 -4.7894 -0.2280 27 1 1.6959 -6.8452 -0.4308 28 1 3.8368 -7.8152 -1.0313 29 1 5.3329 -6.8562 -0.9305 30 1 3.1620 -7.5981 2.4023 31 1 2.5880 -8.0910 0.7845 32 1 3.2127 -9.8917 2.8106 33 1 3.3099 -10.2943 1.0666 34 1 5.4150 -11.4113 0.6669 35 1 6.8209 -11.1197 1.7189 36 1 5.6255 -9.1998 -0.1265 37 1 6.6428 -8.3150 1.0514 38 1 5.2814 -4.5469 -0.1900 39 1 3.9528 -2.4844 0.0027 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880294340.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:46 Heat of formation + Delta-G solvation = -60.128279 kcal Electronic energy + Delta-G solvation = -20982.939010 eV Core-core repulsion = 17611.941527 eV Total energy + Delta-G solvation = -3370.997483 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.89444 -39.59739 -38.76132 -36.66102 -33.33894 -32.17402 -30.36039 -29.86513 -29.25844 -25.95172 -25.05051 -24.13477 -22.03905 -21.24023 -20.89540 -20.06988 -18.38881 -16.95963 -16.82166 -16.11224 -15.95585 -15.53378 -15.06431 -14.77561 -14.39051 -14.01672 -13.73165 -13.65879 -13.54982 -13.43706 -12.99923 -12.87165 -12.43376 -12.05965 -11.70339 -11.51881 -11.24349 -11.19572 -10.98639 -10.91607 -10.77816 -10.70704 -10.63654 -10.29259 -10.25526 -9.39860 -8.76992 -8.32315 -8.22777 -7.25147 -6.77185 -4.06195 2.15934 2.22561 3.23959 3.28553 3.45441 3.85435 4.10541 4.11960 4.31959 4.41806 4.61958 4.69639 4.79792 5.03421 5.05889 5.08930 5.17165 5.23152 5.29911 5.35000 5.40750 5.50863 5.63322 5.67568 5.72308 5.78238 5.88129 5.90082 6.11148 6.15487 6.35930 6.62586 6.80916 6.92486 7.01225 7.11830 7.24971 7.35691 7.57022 7.73116 8.40071 8.92049 9.61062 10.66865 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.044547 B = 0.002941 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.395315 B = 9517.510197 C = 9747.463005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.010 3.990 3 Si 1.096 2.904 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.472 4.472 8 H 0.084 0.916 9 O -0.203 6.203 10 C 0.158 3.842 11 C -0.196 4.196 12 C -0.068 4.068 13 C -0.177 4.177 14 C 0.109 3.891 15 N -0.522 5.522 16 C 0.043 3.957 17 C -0.136 4.136 18 C -0.133 4.133 19 H 0.095 0.905 20 C 0.072 3.928 21 F -0.217 7.217 22 C 0.049 3.951 23 C -0.050 4.050 24 C -0.231 4.231 25 H 0.282 0.718 26 H 0.114 0.886 27 H 0.107 0.893 28 H 0.034 0.966 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.047 0.953 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.943 -18.288 0.750 21.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.196 4.196 3 Si 0.920 3.080 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.548 4.548 8 H 0.101 0.899 9 O -0.107 6.107 10 C 0.105 3.895 11 C -0.216 4.216 12 C -0.086 4.086 13 C -0.178 4.178 14 C -0.018 4.018 15 N -0.246 5.246 16 C -0.084 4.084 17 C -0.174 4.174 18 C -0.152 4.152 19 H 0.114 0.886 20 C 0.017 3.983 21 F -0.199 7.199 22 C -0.079 4.079 23 C -0.068 4.068 24 C -0.250 4.250 25 H 0.092 0.908 26 H 0.132 0.868 27 H 0.125 0.875 28 H 0.052 0.948 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.065 0.935 37 H 0.100 0.900 38 H 0.126 0.874 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 10.641 -16.144 1.080 19.365 hybrid contribution -0.007 -2.376 -0.433 2.415 sum 10.634 -18.520 0.647 21.366 Atomic orbital electron populations 1.70576 1.06574 1.31622 1.42595 1.26541 0.96837 1.01138 0.95038 0.83112 0.74487 0.73341 0.77107 1.19786 1.20707 1.20735 1.22209 0.93105 0.82205 1.57241 0.89869 1.83663 1.35570 1.12265 1.79223 1.19239 0.90332 0.87362 0.92555 1.20143 0.99319 0.90425 1.11671 1.20471 0.93003 0.96377 0.98775 1.19061 0.93067 0.93664 1.12002 1.20964 0.98634 0.93866 0.88374 1.63676 1.08635 1.30676 1.21657 1.22865 0.92336 0.92781 1.00467 1.22834 0.94678 0.97487 1.02424 1.22941 0.96859 0.94177 1.01250 0.88642 1.21934 0.98821 0.86920 0.90638 1.92766 1.88996 1.70157 1.67943 1.22979 0.97350 0.90901 0.96623 1.20566 0.98358 0.91529 0.96392 1.21172 0.93699 0.99037 1.11085 0.90822 0.86819 0.87499 0.94753 0.90862 0.90377 0.92006 0.90458 0.91480 0.90878 0.90568 0.93501 0.89957 0.87428 0.85497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.49 13.70 55.48 0.76 -25.73 16 2 C 0.01 0.27 5.49 -17.52 -0.10 0.18 16 3 Si 1.10 23.78 29.92 -169.99 -5.09 18.70 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.47 -13.37 9.49 30.89 0.29 -13.08 16 8 H 0.08 2.22 5.20 -52.49 -0.27 1.95 16 9 O -0.20 -5.77 9.16 0.05 0.00 -5.77 16 10 C 0.16 3.85 6.65 -39.11 -0.26 3.59 16 11 C -0.20 -4.12 9.99 -39.39 -0.39 -4.52 16 12 C -0.07 -1.19 8.73 -39.61 -0.35 -1.53 16 13 C -0.18 -2.98 5.11 -104.58 -0.53 -3.51 16 14 C 0.11 1.43 4.75 -4.98 -0.02 1.41 16 15 N -0.52 -6.53 5.15 -232.68 -1.20 -7.73 16 16 C 0.04 0.52 6.26 -2.83 -0.02 0.50 16 17 C -0.14 -1.30 6.24 -24.91 -0.16 -1.46 16 18 C -0.13 -1.15 3.41 -88.49 -0.30 -1.45 16 19 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 20 C 0.07 0.52 7.02 37.16 0.26 0.78 16 21 F -0.22 -2.18 17.17 2.25 0.04 -2.14 16 22 C 0.05 0.46 6.15 -2.30 -0.01 0.45 16 23 C -0.05 -0.92 9.69 -39.61 -0.38 -1.31 16 24 C -0.23 -5.10 9.17 -39.40 -0.36 -5.46 16 25 H 0.28 8.65 7.97 -40.82 -0.33 8.33 16 26 H 0.11 2.29 8.06 -52.49 -0.42 1.86 16 27 H 0.11 1.58 6.91 -52.49 -0.36 1.21 16 28 H 0.03 0.42 7.90 -51.93 -0.41 0.01 16 29 H 0.07 0.89 8.01 -51.93 -0.42 0.48 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.76 5.49 -51.93 -0.29 0.47 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.60 8.04 -51.93 -0.42 0.19 16 34 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.05 0.39 7.68 -51.93 -0.40 -0.01 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 39 H 0.13 2.85 5.64 -52.49 -0.30 2.55 16 LS Contribution 322.34 15.07 4.86 4.86 Total: -1.00 -31.04 322.34 -8.32 -39.36 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -5.36 Total: 3.87 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: -2.33 Total: -25.41 kcal Atomic # 7 Polarization: -33.02 SS G_CDS: -0.44 Total: -33.46 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: 0.00 Total: -5.77 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 23.78 SS G_CDS: -5.09 Total: 18.70 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.04 -8.32 -39.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880294340.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.767 kcal (2) G-P(sol) polarization free energy of solvation -31.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds