Wall clock time and date at job start Wed Apr 15 2020 11:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86803 * 119.99681 * 2 1 4 4 H 1.48491 * 109.47160 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46871 * 119.99895 * 3 2 1 6 6 H 1.48500 * 109.47284 * 239.99741 * 3 2 1 7 7 C 1.38659 * 120.00471 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00056 * 179.97438 * 7 2 1 9 9 O 1.34831 * 119.99510 * 0.02562 * 7 2 1 10 10 C 1.35747 * 116.99336 * 174.94088 * 9 7 2 11 11 C 1.38884 * 120.06573 * 185.26153 * 10 9 7 12 12 C 1.38106 * 119.92940 * 179.71857 * 11 10 9 13 13 C 1.38295 * 120.06731 * 0.53470 * 12 11 10 14 14 C 1.50698 * 119.93021 * 179.74212 * 13 12 11 15 15 N 1.46900 * 109.47360 * 270.01751 * 14 13 12 16 16 C 1.47446 * 110.99757 * 69.87445 * 15 14 13 17 17 C 1.54318 * 107.23367 * 123.25880 * 16 15 14 18 18 C 1.55133 * 103.02077 * 22.28348 * 17 16 15 19 19 H 1.09002 * 110.99521 * 82.43674 * 18 17 16 20 20 C 1.52997 * 110.99478 * 206.21820 * 18 17 16 21 21 F 1.39899 * 109.46911 * 298.54608 * 20 18 17 22 22 C 1.47845 * 111.00328 * 190.71200 * 15 14 13 23 23 C 1.38297 * 120.14023 * 359.76076 * 13 12 11 24 24 C 1.38095 * 120.07045 * 359.95954 * 23 13 12 25 25 H 0.97006 * 119.99673 * 180.02562 * 1 2 3 26 26 H 1.07995 * 120.03547 * 359.97438 * 11 10 9 27 27 H 1.07999 * 119.96276 * 180.27162 * 12 11 10 28 28 H 1.09001 * 109.47511 * 30.02062 * 14 13 12 29 29 H 1.09002 * 109.47201 * 150.01865 * 14 13 12 30 30 H 1.09006 * 109.88660 * 242.66504 * 16 15 14 31 31 H 1.09003 * 109.88996 * 3.84894 * 16 15 14 32 32 H 1.09003 * 110.70645 * 140.66601 * 17 16 15 33 33 H 1.08993 * 110.70638 * 263.72317 * 17 16 15 34 34 H 1.09006 * 109.47047 * 58.54104 * 20 18 17 35 35 H 1.08997 * 109.47861 * 178.54526 * 20 18 17 36 36 H 1.08994 * 110.37391 * 332.47328 * 22 15 14 37 37 H 1.09005 * 110.36579 * 94.80905 * 22 15 14 38 38 H 1.08003 * 119.96594 * 179.97438 * 23 13 12 39 39 H 1.08001 * 120.03823 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 1.2845 2.7464 0.0006 5 1 3.1032 1.6965 1.2126 6 1 3.1033 1.6965 -1.2125 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2007 0.0001 9 8 1.3348 -2.3684 0.0005 10 6 2.0702 -3.5045 -0.1056 11 6 1.4368 -4.7350 -0.2221 12 6 2.1878 -5.8885 -0.3358 13 6 3.5690 -5.8202 -0.3225 14 6 4.3854 -7.0813 -0.4409 15 7 4.6437 -7.6251 0.8991 16 6 3.4075 -8.1586 1.5001 17 6 3.6731 -9.6365 1.8561 18 6 5.2197 -9.6987 1.9591 19 1 5.5600 -9.3576 2.9369 20 6 5.7323 -11.1100 1.6653 21 9 5.2109 -12.0013 2.6091 22 6 5.6474 -8.7093 0.8466 23 6 4.2026 -4.5970 -0.2004 24 6 3.4574 -3.4394 -0.0922 25 1 -0.4850 -0.8401 0.0004 26 1 0.3583 -4.7894 -0.2280 27 1 1.6959 -6.8452 -0.4308 28 1 3.8368 -7.8152 -1.0313 29 1 5.3329 -6.8562 -0.9305 30 1 3.1620 -7.5981 2.4023 31 1 2.5880 -8.0910 0.7845 32 1 3.2127 -9.8917 2.8106 33 1 3.3099 -10.2943 1.0666 34 1 5.4150 -11.4113 0.6669 35 1 6.8209 -11.1197 1.7189 36 1 5.6255 -9.1998 -0.1265 37 1 6.6428 -8.3150 1.0514 38 1 5.2814 -4.5469 -0.1900 39 1 3.9528 -2.4844 0.0027 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880294340.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:46 Heat of formation + Delta-G solvation = -79.507563 kcal Electronic energy + Delta-G solvation = -20983.779358 eV Core-core repulsion = 17611.941527 eV Total energy + Delta-G solvation = -3371.837832 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.54626 -41.02386 -40.04346 -38.28940 -34.64409 -33.91509 -31.91598 -30.98387 -30.37459 -27.30288 -26.54312 -25.27864 -23.65176 -22.61424 -21.66562 -21.18088 -20.26496 -18.70522 -17.64723 -17.00031 -16.94918 -16.57177 -16.35086 -16.04928 -15.70495 -15.63601 -15.30560 -15.10446 -14.93059 -14.47356 -14.31503 -14.02103 -13.60718 -13.12630 -12.93406 -12.81645 -12.52127 -12.35401 -12.28891 -12.11090 -11.95544 -11.91997 -11.79365 -11.59121 -11.47619 -11.25656 -10.75660 -9.83740 -9.26953 -8.99222 -8.93470 -6.25027 0.53184 0.61204 1.48295 1.60794 1.78596 2.35716 2.72435 3.03190 3.24021 3.33069 3.41649 3.64405 3.77001 3.99471 3.99865 4.11519 4.13676 4.21041 4.27300 4.39963 4.45789 4.53479 4.61415 4.66464 4.72105 4.75944 4.81634 4.93296 5.00020 5.05206 5.12610 5.21477 5.24535 5.31277 5.50276 5.70918 5.74951 6.04156 6.06560 6.15470 6.29603 6.86055 7.62462 8.49988 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.044547 B = 0.002941 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.395315 B = 9517.510197 C = 9747.463005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.045 4.045 3 Si 1.145 2.855 4 H -0.273 1.273 5 H -0.260 1.260 6 H -0.259 1.259 7 C -0.488 4.488 8 H 0.091 0.909 9 O -0.254 6.254 10 C 0.115 3.885 11 C -0.205 4.205 12 C -0.060 4.060 13 C -0.149 4.149 14 C 0.111 3.889 15 N -0.541 5.541 16 C 0.040 3.960 17 C -0.132 4.132 18 C -0.128 4.128 19 H 0.086 0.914 20 C 0.071 3.929 21 F -0.235 7.235 22 C 0.052 3.948 23 C -0.051 4.051 24 C -0.242 4.242 25 H 0.259 0.741 26 H 0.113 0.887 27 H 0.144 0.856 28 H 0.054 0.946 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.139 0.861 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.926 -20.986 0.070 25.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.241 4.241 3 Si 0.960 3.040 4 H -0.198 1.198 5 H -0.185 1.185 6 H -0.184 1.184 7 C -0.563 4.563 8 H 0.108 0.892 9 O -0.162 6.162 10 C 0.065 3.935 11 C -0.225 4.225 12 C -0.078 4.078 13 C -0.150 4.150 14 C -0.016 4.016 15 N -0.266 5.266 16 C -0.087 4.087 17 C -0.170 4.170 18 C -0.147 4.147 19 H 0.104 0.896 20 C 0.016 3.984 21 F -0.216 7.216 22 C -0.075 4.075 23 C -0.069 4.069 24 C -0.261 4.261 25 H 0.068 0.932 26 H 0.131 0.869 27 H 0.162 0.838 28 H 0.072 0.928 29 H 0.111 0.889 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.116 0.884 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.157 0.843 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 13.665 -18.918 0.401 23.341 hybrid contribution -0.783 -1.944 -0.221 2.107 sum 12.881 -20.862 0.180 24.519 Atomic orbital electron populations 1.70715 1.07770 1.30013 1.46834 1.28405 0.96903 1.04922 0.93870 0.82594 0.73777 0.68810 0.78791 1.19792 1.18483 1.18382 1.22587 0.93664 0.82964 1.57123 0.89176 1.83641 1.36856 1.13200 1.82484 1.19821 0.91602 0.87368 0.94689 1.20435 0.99871 0.90574 1.11579 1.20887 0.93492 0.96532 0.96907 1.19643 0.93223 0.95029 1.07100 1.20987 0.99111 0.92132 0.89384 1.63555 1.09323 1.32675 1.21020 1.22825 0.92285 0.94098 0.99525 1.22792 0.95650 0.95964 1.02623 1.22884 0.95938 0.95153 1.00773 0.89573 1.22096 1.00051 0.85409 0.90853 1.92735 1.89368 1.70725 1.68819 1.23028 0.96591 0.90104 0.97770 1.20923 0.99816 0.90813 0.95369 1.21277 0.93094 1.00131 1.11582 0.93214 0.86936 0.83829 0.92762 0.88902 0.92552 0.92213 0.90839 0.90330 0.89140 0.88417 0.91469 0.89053 0.84335 0.86675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.39 13.70 21.61 0.30 -58.09 16 2 C -0.05 -2.64 5.49 84.84 0.47 -2.17 16 3 Si 1.14 48.73 29.92 68.60 2.05 50.78 16 4 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 5 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 6 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 7 C -0.49 -29.08 9.49 67.92 0.64 -28.43 16 8 H 0.09 5.01 5.20 -2.91 -0.02 5.00 16 9 O -0.25 -15.40 9.16 -22.72 -0.21 -15.61 16 10 C 0.11 5.80 6.65 22.58 0.15 5.95 16 11 C -0.21 -8.73 9.99 22.39 0.22 -8.50 16 12 C -0.06 -1.97 8.73 22.25 0.19 -1.77 16 13 C -0.15 -4.54 5.11 -19.84 -0.10 -4.64 16 14 C 0.11 2.38 4.75 85.56 0.41 2.79 16 15 N -0.54 -11.38 5.15 -890.08 -4.58 -15.96 16 16 C 0.04 0.86 6.26 86.65 0.54 1.40 16 17 C -0.13 -2.15 6.24 31.77 0.20 -1.95 16 18 C -0.13 -1.76 3.41 -9.41 -0.03 -1.80 16 19 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 20 C 0.07 0.75 7.02 71.98 0.51 1.25 16 21 F -0.24 -4.09 17.17 44.97 0.77 -3.32 16 22 C 0.05 0.73 6.15 86.77 0.53 1.26 16 23 C -0.05 -1.77 9.69 22.25 0.22 -1.55 16 24 C -0.24 -10.79 9.17 22.39 0.21 -10.59 16 25 H 0.26 17.19 7.97 -92.70 -0.74 16.45 16 26 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 27 H 0.14 3.69 6.91 -2.91 -0.02 3.67 16 28 H 0.05 1.01 7.90 -2.39 -0.02 0.99 16 29 H 0.09 1.72 8.01 -2.39 -0.02 1.70 16 30 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.06 1.26 5.49 -2.39 -0.01 1.25 16 32 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 1.12 8.04 -2.39 -0.02 1.10 16 34 H 0.09 0.67 8.10 -2.38 -0.02 0.65 16 35 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.07 0.71 7.68 -2.39 -0.02 0.69 16 37 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 39 H 0.12 5.32 5.64 -2.91 -0.02 5.30 16 Total: -1.00 -72.77 322.34 3.56 -69.21 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 1.08 Total: 21.73 kcal Atomic # 6 Polarization: -52.90 SS G_CDS: 4.15 Total: -48.75 kcal Atomic # 7 Polarization: -69.76 SS G_CDS: -4.29 Total: -74.05 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.21 Total: -15.61 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.77 Total: -3.32 kcal Atomic # 14 Polarization: 48.73 SS G_CDS: 2.05 Total: 50.78 kcal Total: -72.77 3.56 -69.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880294340.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.297 kcal (2) G-P(sol) polarization free energy of solvation -72.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds