Wall clock time and date at job start Wed Apr 15 2020 11:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86809 * 119.99517 * 2 1 4 4 H 1.48495 * 109.47014 * 269.99993 * 3 2 1 5 5 H 1.48498 * 109.46807 * 30.00097 * 3 2 1 6 6 H 1.48497 * 109.47179 * 150.00023 * 3 2 1 7 7 C 1.37868 * 120.00632 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00023 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00285 * 180.02562 * 7 2 1 10 10 C 1.53120 * 109.52298 * 180.02562 * 9 7 2 11 11 C 1.53035 * 109.27767 * 177.62317 * 10 9 7 12 12 N 1.46851 * 109.52509 * 300.81689 * 11 10 9 13 13 C 1.46895 * 111.00243 * 185.84233 * 12 11 10 14 14 C 1.50702 * 109.47044 * 170.00036 * 13 12 11 15 15 C 1.38264 * 119.93610 * 89.99918 * 14 13 12 16 16 C 1.38185 * 120.09170 * 179.97438 * 15 14 13 17 17 C 1.38656 * 119.97132 * 0.02562 * 16 15 14 18 18 O 1.35958 * 120.06437 * 180.02562 * 17 16 15 19 19 C 1.38912 * 119.87576 * 359.97438 * 17 16 15 20 20 F 1.35097 * 120.04767 * 180.02562 * 19 17 16 21 21 C 1.38251 * 119.93611 * 269.97722 * 14 13 12 22 22 C 1.46844 * 111.19681 * 61.73938 * 12 11 10 23 23 C 1.53040 * 109.52605 * 298.26208 * 22 12 11 24 24 H 0.96992 * 120.00783 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.52532 * 59.87111 * 9 7 2 26 26 H 1.08998 * 109.50754 * 57.67810 * 10 9 7 27 27 H 1.09001 * 109.53381 * 297.57843 * 10 9 7 28 28 H 1.09001 * 109.46249 * 180.80176 * 11 10 9 29 29 H 1.08999 * 109.45563 * 60.82949 * 11 10 9 30 30 H 1.09001 * 109.47551 * 50.00067 * 13 12 11 31 31 H 1.09005 * 109.47000 * 289.99865 * 13 12 11 32 32 H 1.07991 * 119.95333 * 0.25328 * 15 14 13 33 33 H 1.07998 * 120.01220 * 180.02562 * 16 15 14 34 34 H 0.96695 * 114.00197 * 89.99328 * 18 17 16 35 35 H 1.08003 * 119.98636 * 0.02562 * 21 14 13 36 36 H 1.09008 * 109.46006 * 58.27763 * 22 12 11 37 37 H 1.08997 * 109.46536 * 178.24411 * 22 12 11 38 38 H 1.08995 * 109.50285 * 299.23549 * 23 22 12 39 39 H 1.09004 * 109.53362 * 179.13668 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4463 2.6527 0.7001 6 1 3.5465 1.4404 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1938 0.0000 10 6 4.0234 -2.6369 -0.0014 11 6 5.5526 -2.6306 -0.0607 12 7 5.9937 -1.9348 -1.2763 13 6 7.4507 -2.0294 -1.4377 14 6 7.8385 -1.5252 -2.8038 15 6 8.1370 -0.1875 -2.9866 16 6 8.4935 0.2782 -4.2378 17 6 8.5516 -0.5968 -5.3119 18 8 8.9027 -0.1407 -6.5436 19 6 8.2515 -1.9404 -5.1269 20 9 8.3075 -2.7960 -6.1708 21 6 7.8957 -2.4011 -3.8719 22 6 5.5542 -0.5337 -1.2752 23 6 4.0250 -0.4774 -1.2521 24 1 -0.4851 0.8399 0.0004 25 1 3.8755 -0.6787 0.8891 26 1 3.6276 -3.1626 -0.8703 27 1 3.6966 -3.1404 0.9085 28 1 5.9196 -3.6569 -0.0762 29 1 5.9477 -2.1168 0.8156 30 1 7.7613 -3.0689 -1.3324 31 1 7.9408 -1.4247 -0.6746 32 1 8.0958 0.4934 -2.1494 33 1 8.7268 1.3232 -4.3789 34 1 9.8530 -0.1741 -6.7193 35 1 7.6620 -3.4455 -3.7266 36 1 5.9495 -0.0297 -0.3931 37 1 5.9223 -0.0368 -2.1727 38 1 3.6293 -0.9690 -2.1407 39 1 3.6988 0.5626 -1.2358 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893488103.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:48 Heat of formation + Delta-G solvation = -60.675748 kcal Electronic energy + Delta-G solvation = -21756.171951 eV Core-core repulsion = 18385.150728 eV Total energy + Delta-G solvation = -3371.021223 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.98971 -39.97183 -38.54379 -37.00566 -34.12026 -31.95558 -30.95123 -30.40753 -29.85464 -26.72421 -24.39950 -23.28968 -22.46946 -21.86875 -20.95457 -18.89048 -18.78430 -17.10986 -16.86529 -16.66071 -16.19176 -15.76600 -15.30558 -14.77560 -14.36523 -14.27231 -14.10534 -13.93150 -13.38181 -13.11474 -12.95671 -12.59327 -12.36791 -12.19301 -11.98656 -11.71650 -11.45857 -11.35963 -10.85273 -10.79916 -10.57056 -10.08092 -9.91164 -9.62770 -9.14480 -9.05536 -8.91006 -8.71207 -8.49574 -8.01179 -6.04623 -4.02961 0.83787 0.98548 3.21205 3.27806 3.36553 3.39452 3.74311 4.13129 4.28103 4.42547 4.50161 4.65945 4.99595 5.06933 5.22385 5.27518 5.39758 5.49439 5.58491 5.65685 5.76902 5.80206 5.87392 5.88654 5.97471 6.08208 6.16163 6.30960 6.35820 6.43149 6.52855 6.73104 6.82176 6.92521 7.22405 7.31698 7.35068 7.47222 7.63580 7.80900 8.56131 9.00111 9.58393 11.09016 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.022437 B = 0.004448 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.637958 B = 6293.446177 C = 6767.120311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.069 3.931 3 Si 0.886 3.114 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.268 1.268 7 C -0.510 4.510 8 H 0.073 0.927 9 C 0.013 3.987 10 C -0.096 4.096 11 C 0.057 3.943 12 N -0.529 5.529 13 C 0.090 3.910 14 C -0.048 4.048 15 C -0.108 4.108 16 C -0.117 4.117 17 C 0.067 3.933 18 O -0.489 6.489 19 C 0.073 3.927 20 F -0.135 7.135 21 C -0.118 4.118 22 C 0.051 3.949 23 C -0.116 4.116 24 H 0.263 0.737 25 H 0.021 0.979 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.027 0.973 30 H 0.084 0.916 31 H 0.044 0.956 32 H 0.132 0.868 33 H 0.138 0.862 34 H 0.388 0.612 35 H 0.141 0.859 36 H 0.025 0.975 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.724 -1.727 -6.362 22.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.132 4.132 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.226 1.226 6 H -0.193 1.193 7 C -0.548 4.548 8 H 0.091 0.909 9 C -0.006 4.006 10 C -0.134 4.134 11 C -0.070 4.070 12 N -0.254 5.254 13 C -0.038 4.038 14 C -0.048 4.048 15 C -0.126 4.126 16 C -0.135 4.135 17 C 0.021 3.979 18 O -0.298 6.298 19 C 0.053 3.947 20 F -0.114 7.114 21 C -0.137 4.137 22 C -0.077 4.077 23 C -0.154 4.154 24 H 0.073 0.927 25 H 0.039 0.961 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.046 0.954 30 H 0.102 0.898 31 H 0.062 0.938 32 H 0.150 0.850 33 H 0.155 0.845 34 H 0.244 0.756 35 H 0.159 0.841 36 H 0.044 0.956 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 20.726 -1.799 -6.848 21.902 hybrid contribution 1.193 1.246 0.371 1.764 sum 21.919 -0.554 -6.477 22.863 Atomic orbital electron populations 1.69894 1.06275 1.26838 1.51138 1.25020 0.94658 0.98972 0.94597 0.86862 0.79797 0.83780 0.77882 1.20556 1.22585 1.19275 1.21062 0.88874 0.94417 1.50446 0.90859 1.19186 0.96660 0.91975 0.92760 1.21497 0.91203 0.99332 1.01379 1.22209 0.98319 0.97239 0.89212 1.61956 1.09110 1.15311 1.38995 1.21053 0.89776 1.01179 0.91767 1.19690 0.96634 0.92961 0.95562 1.21074 0.99155 0.95241 0.97166 1.21272 1.00775 1.00061 0.91415 1.18423 1.03835 0.89820 0.85831 1.84903 1.29437 1.85638 1.29835 1.18093 1.04884 0.86880 0.84844 1.91490 1.94102 1.69524 1.56236 1.20963 1.00856 1.01653 0.90261 1.22305 0.98399 0.87549 0.99399 1.22016 0.91329 0.99977 1.02063 0.92739 0.96077 0.91738 0.92259 0.91681 0.95440 0.89758 0.93816 0.85020 0.84466 0.75601 0.84090 0.95635 0.91556 0.91272 0.93400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 2 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 3 Si 0.89 22.05 24.36 -169.99 -4.14 17.91 16 4 H -0.28 -6.78 6.89 56.52 0.39 -6.39 16 5 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.27 -6.33 6.53 56.52 0.37 -5.96 16 7 C -0.51 -14.32 9.15 -34.44 -0.32 -14.64 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C 0.01 0.30 1.75 -91.65 -0.16 0.14 16 10 C -0.10 -1.88 5.32 -26.65 -0.14 -2.02 16 11 C 0.06 0.90 5.46 -3.83 -0.02 0.88 16 12 N -0.53 -8.26 4.65 -236.11 -1.10 -9.36 16 13 C 0.09 1.07 5.12 -4.98 -0.03 1.05 16 14 C -0.05 -0.56 4.89 -104.61 -0.51 -1.07 16 15 C -0.11 -1.17 7.86 -39.59 -0.31 -1.48 16 16 C -0.12 -1.22 9.98 -39.45 -0.39 -1.61 16 17 C 0.07 0.77 6.71 -39.18 -0.26 0.51 16 18 O -0.49 -5.12 13.37 -19.61 -0.26 -5.38 16 19 C 0.07 0.91 7.31 -39.30 -0.29 0.62 16 20 F -0.13 -1.79 17.11 2.25 0.04 -1.75 16 21 C -0.12 -1.40 9.67 -39.54 -0.38 -1.79 16 22 C 0.05 0.88 5.16 -3.83 -0.02 0.86 16 23 C -0.12 -2.51 4.84 -26.65 -0.13 -2.64 16 24 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 25 H 0.02 0.51 7.20 -51.93 -0.37 0.13 16 26 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.06 0.87 8.02 -51.93 -0.42 0.46 16 29 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.87 7.93 -51.93 -0.41 0.46 16 31 H 0.04 0.48 8.07 -51.93 -0.42 0.07 16 32 H 0.13 1.27 7.96 -52.49 -0.42 0.86 16 33 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.39 2.02 9.06 45.56 0.41 2.43 16 35 H 0.14 1.52 8.06 -52.48 -0.42 1.10 16 36 H 0.03 0.43 8.14 -51.92 -0.42 0.01 16 37 H 0.07 1.07 5.75 -51.93 -0.30 0.77 16 38 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 39 H 0.05 1.09 3.38 -51.93 -0.18 0.92 16 LS Contribution 313.12 15.07 4.72 4.72 Total: -1.00 -32.21 313.12 -7.69 -39.90 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -4.66 Total: 0.35 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: -3.06 Total: -19.30 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: -0.32 Total: -36.44 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -0.26 Total: -5.38 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.14 Total: 17.91 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.21 -7.69 -39.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893488103.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.779 kcal (2) G-P(sol) polarization free energy of solvation -32.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds