Wall clock time and date at job start Wed Apr 15 2020 11:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86809 * 119.99517 * 2 1 4 4 H 1.48495 * 109.47014 * 269.99993 * 3 2 1 5 5 H 1.48498 * 109.46807 * 30.00097 * 3 2 1 6 6 H 1.48497 * 109.47179 * 150.00023 * 3 2 1 7 7 C 1.37868 * 120.00632 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00023 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00285 * 180.02562 * 7 2 1 10 10 C 1.53120 * 109.52298 * 180.02562 * 9 7 2 11 11 C 1.53035 * 109.27767 * 177.62317 * 10 9 7 12 12 N 1.46851 * 109.52509 * 300.81689 * 11 10 9 13 13 C 1.46895 * 111.00243 * 185.84233 * 12 11 10 14 14 C 1.50702 * 109.47044 * 170.00036 * 13 12 11 15 15 C 1.38264 * 119.93610 * 89.99918 * 14 13 12 16 16 C 1.38185 * 120.09170 * 179.97438 * 15 14 13 17 17 C 1.38656 * 119.97132 * 0.02562 * 16 15 14 18 18 O 1.35958 * 120.06437 * 180.02562 * 17 16 15 19 19 C 1.38912 * 119.87576 * 359.97438 * 17 16 15 20 20 F 1.35097 * 120.04767 * 180.02562 * 19 17 16 21 21 C 1.38251 * 119.93611 * 269.97722 * 14 13 12 22 22 C 1.46844 * 111.19681 * 61.73938 * 12 11 10 23 23 C 1.53040 * 109.52605 * 298.26208 * 22 12 11 24 24 H 0.96992 * 120.00783 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.52532 * 59.87111 * 9 7 2 26 26 H 1.08998 * 109.50754 * 57.67810 * 10 9 7 27 27 H 1.09001 * 109.53381 * 297.57843 * 10 9 7 28 28 H 1.09001 * 109.46249 * 180.80176 * 11 10 9 29 29 H 1.08999 * 109.45563 * 60.82949 * 11 10 9 30 30 H 1.09001 * 109.47551 * 50.00067 * 13 12 11 31 31 H 1.09005 * 109.47000 * 289.99865 * 13 12 11 32 32 H 1.07991 * 119.95333 * 0.25328 * 15 14 13 33 33 H 1.07998 * 120.01220 * 180.02562 * 16 15 14 34 34 H 0.96695 * 114.00197 * 89.99328 * 18 17 16 35 35 H 1.08003 * 119.98636 * 0.02562 * 21 14 13 36 36 H 1.09008 * 109.46006 * 58.27763 * 22 12 11 37 37 H 1.08997 * 109.46536 * 178.24411 * 22 12 11 38 38 H 1.08995 * 109.50285 * 299.23549 * 23 22 12 39 39 H 1.09004 * 109.53362 * 179.13668 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4463 2.6527 0.7001 6 1 3.5465 1.4404 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1938 0.0000 10 6 4.0234 -2.6369 -0.0014 11 6 5.5526 -2.6306 -0.0607 12 7 5.9937 -1.9348 -1.2763 13 6 7.4507 -2.0294 -1.4377 14 6 7.8385 -1.5252 -2.8038 15 6 8.1370 -0.1875 -2.9866 16 6 8.4935 0.2782 -4.2378 17 6 8.5516 -0.5968 -5.3119 18 8 8.9027 -0.1407 -6.5436 19 6 8.2515 -1.9404 -5.1269 20 9 8.3075 -2.7960 -6.1708 21 6 7.8957 -2.4011 -3.8719 22 6 5.5542 -0.5337 -1.2752 23 6 4.0250 -0.4774 -1.2521 24 1 -0.4851 0.8399 0.0004 25 1 3.8755 -0.6787 0.8891 26 1 3.6276 -3.1626 -0.8703 27 1 3.6966 -3.1404 0.9085 28 1 5.9196 -3.6569 -0.0762 29 1 5.9477 -2.1168 0.8156 30 1 7.7613 -3.0689 -1.3324 31 1 7.9408 -1.4247 -0.6746 32 1 8.0958 0.4934 -2.1494 33 1 8.7268 1.3232 -4.3789 34 1 9.8530 -0.1741 -6.7193 35 1 7.6620 -3.4455 -3.7266 36 1 5.9495 -0.0297 -0.3931 37 1 5.9223 -0.0368 -2.1727 38 1 3.6293 -0.9690 -2.1407 39 1 3.6988 0.5626 -1.2358 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893488103.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:47 Heat of formation + Delta-G solvation = -83.874988 kcal Electronic energy + Delta-G solvation = -21757.177945 eV Core-core repulsion = 18385.150728 eV Total energy + Delta-G solvation = -3372.027218 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.92463 -40.87545 -39.74647 -37.94923 -35.70827 -33.80151 -31.88719 -31.75432 -31.03075 -28.19613 -25.79967 -24.33637 -23.76058 -23.16198 -22.12050 -20.45166 -19.61069 -18.82488 -18.01869 -17.71660 -17.26416 -16.99433 -16.21838 -16.10135 -15.84927 -15.45814 -15.01183 -14.93177 -14.88022 -14.80083 -14.37622 -13.89977 -13.57358 -13.42196 -13.30781 -13.01841 -12.68611 -12.51646 -12.43277 -12.12516 -11.97200 -11.66127 -11.58929 -11.36719 -10.96340 -10.80014 -10.60455 -9.91682 -9.58397 -9.14598 -8.28894 -6.32037 0.00355 0.16450 1.29941 1.34078 1.45263 2.32902 2.37484 2.97188 3.06757 3.17230 3.32593 3.66638 3.83754 4.11997 4.16721 4.19955 4.23791 4.30617 4.37162 4.54236 4.62896 4.71221 4.74760 4.82810 4.84897 4.95352 4.98336 4.99990 5.05264 5.17029 5.20394 5.28283 5.48529 5.56226 5.68987 5.75571 5.80127 6.18467 6.26711 6.34395 6.71055 6.75615 7.33316 8.88507 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.022437 B = 0.004448 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.637958 B = 6293.446177 C = 6767.120311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.008 3.992 3 Si 0.951 3.049 4 H -0.269 1.269 5 H -0.300 1.300 6 H -0.242 1.242 7 C -0.518 4.518 8 H 0.029 0.971 9 C 0.012 3.988 10 C -0.094 4.094 11 C 0.067 3.933 12 N -0.544 5.544 13 C 0.094 3.906 14 C -0.059 4.059 15 C -0.106 4.106 16 C -0.117 4.117 17 C 0.065 3.935 18 O -0.502 6.502 19 C 0.047 3.953 20 F -0.147 7.147 21 C -0.122 4.122 22 C 0.061 3.939 23 C -0.115 4.115 24 H 0.264 0.736 25 H 0.022 0.978 26 H 0.046 0.954 27 H 0.057 0.943 28 H 0.094 0.906 29 H 0.039 0.961 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.149 0.851 33 H 0.159 0.841 34 H 0.410 0.590 35 H 0.146 0.854 36 H 0.038 0.962 37 H 0.081 0.919 38 H 0.047 0.953 39 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.093 -0.587 -6.132 25.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.189 4.189 3 Si 0.778 3.222 4 H -0.195 1.195 5 H -0.228 1.228 6 H -0.166 1.166 7 C -0.556 4.556 8 H 0.047 0.953 9 C -0.007 4.007 10 C -0.132 4.132 11 C -0.060 4.060 12 N -0.269 5.269 13 C -0.033 4.033 14 C -0.059 4.059 15 C -0.125 4.125 16 C -0.135 4.135 17 C 0.019 3.981 18 O -0.315 6.315 19 C 0.028 3.972 20 F -0.125 7.125 21 C -0.141 4.141 22 C -0.067 4.067 23 C -0.153 4.153 24 H 0.073 0.927 25 H 0.040 0.960 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.112 0.888 29 H 0.057 0.943 30 H 0.121 0.879 31 H 0.080 0.920 32 H 0.167 0.833 33 H 0.177 0.823 34 H 0.270 0.730 35 H 0.164 0.836 36 H 0.056 0.944 37 H 0.099 0.901 38 H 0.066 0.934 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 24.146 -0.682 -6.625 25.047 hybrid contribution 0.098 0.795 0.248 0.838 sum 24.244 0.112 -6.376 25.069 Atomic orbital electron populations 1.70060 1.08333 1.27927 1.53189 1.25936 0.95427 1.03180 0.94332 0.85799 0.79256 0.78537 0.78587 1.19477 1.22769 1.16597 1.21455 0.91936 0.92749 1.49447 0.95256 1.19160 0.93162 0.94781 0.93595 1.21406 0.94688 0.96591 1.00535 1.22087 0.94795 0.99276 0.89872 1.61852 1.11971 1.14118 1.38967 1.21114 0.87090 1.02898 0.92200 1.19748 0.97390 0.93393 0.95407 1.21330 0.98153 0.95149 0.97827 1.21510 1.00165 1.00918 0.90905 1.18600 1.03404 0.89630 0.86426 1.84836 1.31650 1.85461 1.29562 1.18364 1.06449 0.87423 0.84979 1.91454 1.94375 1.69945 1.56757 1.21084 1.00633 1.02153 0.90226 1.22126 0.94719 0.89138 1.00725 1.21867 0.95019 0.98501 0.99887 0.92694 0.96041 0.93546 0.92455 0.88771 0.94276 0.87896 0.91960 0.83286 0.82326 0.73045 0.83618 0.94396 0.90074 0.93400 0.94522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.01 13.96 21.44 0.30 -60.72 16 2 C 0.01 0.44 5.45 84.65 0.46 0.91 16 3 Si 0.95 45.36 24.36 68.60 1.67 47.03 16 4 H -0.27 -12.29 6.89 99.48 0.69 -11.60 16 5 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 6 H -0.24 -10.47 6.53 99.48 0.65 -9.82 16 7 C -0.52 -30.04 9.15 25.60 0.23 -29.80 16 8 H 0.03 1.89 7.99 -2.91 -0.02 1.86 16 9 C 0.01 0.55 1.75 -11.46 -0.02 0.53 16 10 C -0.09 -3.61 5.32 30.65 0.16 -3.44 16 11 C 0.07 1.88 5.46 86.32 0.47 2.35 16 12 N -0.54 -15.08 4.65 -900.92 -4.19 -19.27 16 13 C 0.09 1.82 5.12 85.56 0.44 2.26 16 14 C -0.06 -1.18 4.89 -19.85 -0.10 -1.28 16 15 C -0.11 -1.90 7.86 22.26 0.17 -1.73 16 16 C -0.12 -2.06 9.98 22.36 0.22 -1.83 16 17 C 0.07 1.37 6.71 22.53 0.15 1.52 16 18 O -0.50 -9.54 13.37 -93.08 -1.24 -10.79 16 19 C 0.05 1.12 7.31 22.45 0.16 1.28 16 20 F -0.15 -3.81 17.11 44.97 0.77 -3.04 16 21 C -0.12 -2.64 9.67 22.30 0.22 -2.43 16 22 C 0.06 1.89 5.16 86.33 0.45 2.33 16 23 C -0.11 -4.80 4.84 30.65 0.15 -4.65 16 24 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 25 H 0.02 0.99 7.20 -2.39 -0.02 0.97 16 26 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.09 2.14 8.02 -2.39 -0.02 2.12 16 29 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.10 1.65 7.93 -2.39 -0.02 1.63 16 31 H 0.06 1.03 8.07 -2.38 -0.02 1.02 16 32 H 0.15 2.15 7.96 -2.92 -0.02 2.12 16 33 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 34 H 0.41 3.42 9.06 -74.06 -0.67 2.75 16 35 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 36 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.08 2.30 5.75 -2.39 -0.01 2.29 16 38 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.04 1.60 3.38 -2.39 -0.01 1.59 16 Total: -1.00 -71.97 313.12 0.80 -71.18 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 0.31 Total: 9.58 kcal Atomic # 6 Polarization: -37.16 SS G_CDS: 3.17 Total: -33.98 kcal Atomic # 7 Polarization: -76.09 SS G_CDS: -3.89 Total: -79.98 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -1.24 Total: -10.79 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.77 Total: -3.04 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.67 Total: 47.03 kcal Total: -71.97 0.80 -71.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893488103.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.696 kcal (2) G-P(sol) polarization free energy of solvation -71.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds