Wall clock time and date at job start Wed Apr 15 2020 11:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99776 * 2 1 4 4 H 1.48499 * 109.47181 * 270.00187 * 3 2 1 5 5 H 1.48502 * 109.46941 * 30.00354 * 3 2 1 6 6 H 1.48502 * 109.46924 * 150.00034 * 3 2 1 7 7 C 1.37879 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99823 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99822 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.50415 * 299.92356 * 9 7 2 11 11 C 1.53117 * 109.50146 * 60.00138 * 9 7 2 12 12 C 1.53126 * 109.16023 * 177.63415 * 11 9 7 13 13 C 1.53046 * 109.27553 * 302.34612 * 12 11 9 14 14 N 1.46844 * 109.52125 * 59.18130 * 13 12 11 15 15 C 1.46905 * 110.99808 * 174.16324 * 14 13 12 16 16 C 1.50696 * 109.47331 * 66.03972 * 15 14 13 17 17 C 1.38260 * 119.93901 * 269.97643 * 16 15 14 18 18 C 1.38176 * 120.09432 * 179.97438 * 17 16 15 19 19 C 1.38664 * 119.97322 * 359.75787 * 18 17 16 20 20 O 1.35952 * 120.06435 * 180.25078 * 19 18 17 21 21 C 1.38915 * 119.86771 * 0.51596 * 19 18 17 22 22 F 1.35104 * 120.04385 * 179.75101 * 21 19 18 23 23 C 1.38255 * 119.93443 * 90.00471 * 16 15 14 24 24 C 1.46849 * 111.19727 * 298.25346 * 14 13 12 25 25 H 0.96996 * 119.99982 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.52134 * 57.73417 * 11 9 7 27 27 H 1.08994 * 109.52517 * 297.53900 * 11 9 7 28 28 H 1.08995 * 109.50645 * 182.40887 * 12 11 9 29 29 H 1.08996 * 109.50148 * 62.28232 * 12 11 9 30 30 H 1.08996 * 109.46405 * 299.16393 * 13 12 11 31 31 H 1.09000 * 109.46178 * 179.19413 * 13 12 11 32 32 H 1.09001 * 109.46548 * 306.03734 * 15 14 13 33 33 H 1.08997 * 109.46958 * 186.04699 * 15 14 13 34 34 H 1.07998 * 119.95191 * 359.97438 * 17 16 15 35 35 H 1.08003 * 120.01524 * 180.02562 * 18 17 16 36 36 H 0.96698 * 113.99921 * 270.26240 * 20 19 18 37 37 H 1.08000 * 119.98716 * 0.02562 * 23 16 15 38 38 H 1.09001 * 109.46164 * 181.75840 * 24 14 13 39 39 H 1.09000 * 109.46275 * 301.72700 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6257 -2.5582 0.8902 11 6 0.3701 -2.5807 -1.2502 12 6 -0.3464 -3.9338 -1.2725 13 6 0.6932 -5.0565 -1.2407 14 7 1.5099 -4.9349 -0.0264 15 6 2.4269 -6.0747 0.1077 16 6 3.4379 -6.0402 -1.0093 17 6 3.1728 -6.6906 -2.2002 18 6 4.0973 -6.6606 -3.2267 19 6 5.2905 -5.9732 -3.0645 20 8 6.1992 -5.9382 -4.0752 21 6 5.5579 -5.3249 -1.8654 22 9 6.7216 -4.6583 -1.7017 23 6 4.6289 -5.3587 -0.8410 24 6 2.2443 -3.6634 -0.0056 25 1 -0.4850 0.8400 0.0004 26 1 0.9910 -2.4826 -2.1406 27 1 -0.3673 -1.7784 -1.2290 28 1 -0.9421 -4.0152 -2.1816 29 1 -0.9969 -4.0155 -0.4018 30 1 1.3348 -4.9825 -2.1188 31 1 0.1860 -6.0213 -1.2421 32 1 1.8605 -7.0046 0.0566 33 1 2.9423 -6.0155 1.0663 34 1 2.2419 -7.2229 -2.3283 35 1 3.8887 -7.1688 -4.1566 36 1 6.8389 -6.6631 -4.0542 37 1 4.8341 -4.8521 0.0905 38 1 2.8636 -3.6163 0.8901 39 1 2.8786 -3.5959 -0.8895 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895310616.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:50 Heat of formation + Delta-G solvation = -68.578098 kcal Electronic energy + Delta-G solvation = -22229.592382 eV Core-core repulsion = 18858.228487 eV Total energy + Delta-G solvation = -3371.363895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.83575 -39.98332 -38.34454 -36.65850 -33.82930 -32.06871 -30.81575 -29.86940 -29.45874 -25.81032 -24.97128 -23.06869 -22.55890 -21.34772 -20.97517 -18.81685 -18.45713 -16.98298 -16.70232 -16.35720 -16.02089 -15.17223 -15.03819 -14.55209 -14.40275 -14.19028 -13.96371 -13.69633 -13.36928 -12.70974 -12.64586 -12.41700 -12.25603 -11.91645 -11.65565 -11.57020 -11.20978 -10.92670 -10.73147 -10.63312 -10.62130 -10.10274 -9.83235 -9.48473 -9.08728 -8.92486 -8.70065 -8.54276 -8.28630 -7.76049 -5.95688 -4.01590 0.97555 1.11004 3.32888 3.37501 3.39481 3.43075 3.87256 4.26346 4.41413 4.56593 4.67244 4.81199 5.10690 5.21436 5.34532 5.40854 5.63413 5.66966 5.81118 5.89407 5.94488 6.00137 6.04864 6.08886 6.23826 6.41721 6.44706 6.50054 6.66282 6.71208 6.76350 6.96114 7.21554 7.38609 7.43076 7.60388 7.73591 7.79424 8.08970 8.18616 8.49609 9.02239 9.62807 11.10291 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016677 B = 0.005680 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.578149 B = 4928.598713 C = 5936.650124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.053 0.947 9 C 0.055 3.945 10 H 0.034 0.966 11 C -0.111 4.111 12 C -0.118 4.118 13 C 0.058 3.942 14 N -0.524 5.524 15 C 0.089 3.911 16 C -0.090 4.090 17 C -0.105 4.105 18 C -0.119 4.119 19 C 0.065 3.935 20 O -0.488 6.488 21 C 0.075 3.925 22 F -0.134 7.134 23 C -0.123 4.123 24 C 0.063 3.937 25 H 0.259 0.741 26 H 0.029 0.971 27 H 0.091 0.909 28 H 0.046 0.954 29 H 0.060 0.940 30 H 0.029 0.971 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.387 0.613 37 H 0.140 0.860 38 H 0.058 0.942 39 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.519 -16.088 -4.183 17.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.071 0.929 9 C 0.036 3.964 10 H 0.052 0.948 11 C -0.149 4.149 12 C -0.156 4.156 13 C -0.070 4.070 14 N -0.246 5.246 15 C -0.039 4.039 16 C -0.092 4.092 17 C -0.124 4.124 18 C -0.137 4.137 19 C 0.019 3.981 20 O -0.298 6.298 21 C 0.055 3.945 22 F -0.113 7.113 23 C -0.143 4.143 24 C -0.064 4.064 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.109 0.891 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.149 0.851 35 H 0.154 0.846 36 H 0.242 0.758 37 H 0.158 0.842 38 H 0.076 0.924 39 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 5.761 -15.413 -3.915 16.914 hybrid contribution 1.599 0.739 -0.726 1.906 sum 7.360 -14.674 -4.641 17.060 Atomic orbital electron populations 1.69885 1.05817 1.26294 1.50749 1.24915 0.94811 0.98899 0.95117 0.86654 0.79937 0.83701 0.78070 1.20782 1.21212 1.19947 1.21138 0.92807 0.90675 1.50632 0.92913 1.18662 0.92585 0.90314 0.94817 0.94804 1.21657 1.00037 0.94749 0.98488 1.21682 0.97170 0.96493 1.00215 1.22120 0.95531 0.98698 0.90676 1.62466 1.22151 1.02302 1.37692 1.21367 0.91447 0.95912 0.95173 1.20749 0.94962 0.95824 0.97702 1.21021 0.99173 0.99722 0.92520 1.21270 0.93386 0.99277 0.99814 1.18416 0.92018 1.00875 0.86778 1.84909 1.44762 1.53159 1.46943 1.18128 0.83918 0.97898 0.94548 1.91495 1.45701 1.78219 1.95875 1.21106 0.93224 1.00700 0.99226 1.22398 0.96656 0.88343 0.98965 0.93077 0.95239 0.89074 0.93525 0.92076 0.95248 0.92414 0.90062 0.89835 0.85061 0.84640 0.75759 0.84172 0.92375 0.95601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.50 11.35 55.43 0.63 -24.88 16 2 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -14.23 8.57 -34.44 -0.30 -14.52 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.05 1.38 2.26 -91.70 -0.21 1.17 16 10 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 11 C -0.11 -2.65 5.02 -26.61 -0.13 -2.78 16 12 C -0.12 -2.27 6.09 -26.64 -0.16 -2.43 16 13 C 0.06 0.97 4.82 -3.83 -0.02 0.95 16 14 N -0.52 -9.16 4.86 -236.11 -1.15 -10.30 16 15 C 0.09 1.21 5.55 -4.98 -0.03 1.18 16 16 C -0.09 -1.21 4.04 -104.61 -0.42 -1.63 16 17 C -0.11 -1.26 8.10 -39.60 -0.32 -1.58 16 18 C -0.12 -1.39 9.98 -39.45 -0.39 -1.79 16 19 C 0.06 0.87 6.71 -39.17 -0.26 0.60 16 20 O -0.49 -5.89 13.37 -19.59 -0.26 -6.15 16 21 C 0.07 1.11 7.31 -39.30 -0.29 0.83 16 22 F -0.13 -2.14 17.11 2.25 0.04 -2.10 16 23 C -0.12 -1.78 7.98 -39.54 -0.32 -2.10 16 24 C 0.06 1.31 3.76 -3.83 -0.01 1.30 16 25 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.03 0.51 6.55 -51.93 -0.34 0.17 16 31 H 0.06 0.82 8.06 -51.93 -0.42 0.40 16 32 H 0.08 0.92 8.00 -51.93 -0.42 0.51 16 33 H 0.08 1.07 8.08 -51.93 -0.42 0.65 16 34 H 0.13 1.31 8.03 -52.49 -0.42 0.88 16 35 H 0.14 1.26 8.06 -52.48 -0.42 0.84 16 36 H 0.39 2.56 9.06 45.56 0.41 2.98 16 37 H 0.14 1.99 8.02 -52.49 -0.42 1.57 16 38 H 0.06 1.19 8.12 -51.93 -0.42 0.77 16 39 H 0.03 0.56 6.46 -51.93 -0.34 0.23 16 LS Contribution 316.30 15.07 4.77 4.77 Total: -1.00 -30.73 316.30 -8.71 -39.44 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -4.76 Total: 1.74 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -2.96 Total: -19.12 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: -0.52 Total: -35.18 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.26 Total: -6.15 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.10 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.73 -8.71 -39.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895310616.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.138 kcal (2) G-P(sol) polarization free energy of solvation -30.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds