Wall clock time and date at job start Wed Apr 15 2020 11:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99776 * 2 1 4 4 H 1.48499 * 109.47181 * 270.00187 * 3 2 1 5 5 H 1.48502 * 109.46941 * 30.00354 * 3 2 1 6 6 H 1.48502 * 109.46924 * 150.00034 * 3 2 1 7 7 C 1.37879 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99823 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99822 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.50415 * 299.92356 * 9 7 2 11 11 C 1.53117 * 109.50146 * 60.00138 * 9 7 2 12 12 C 1.53126 * 109.16023 * 177.63415 * 11 9 7 13 13 C 1.53046 * 109.27553 * 302.34612 * 12 11 9 14 14 N 1.46844 * 109.52125 * 59.18130 * 13 12 11 15 15 C 1.46905 * 110.99808 * 174.16324 * 14 13 12 16 16 C 1.50696 * 109.47331 * 66.03972 * 15 14 13 17 17 C 1.38260 * 119.93901 * 269.97643 * 16 15 14 18 18 C 1.38176 * 120.09432 * 179.97438 * 17 16 15 19 19 C 1.38664 * 119.97322 * 359.75787 * 18 17 16 20 20 O 1.35952 * 120.06435 * 180.25078 * 19 18 17 21 21 C 1.38915 * 119.86771 * 0.51596 * 19 18 17 22 22 F 1.35104 * 120.04385 * 179.75101 * 21 19 18 23 23 C 1.38255 * 119.93443 * 90.00471 * 16 15 14 24 24 C 1.46849 * 111.19727 * 298.25346 * 14 13 12 25 25 H 0.96996 * 119.99982 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.52134 * 57.73417 * 11 9 7 27 27 H 1.08994 * 109.52517 * 297.53900 * 11 9 7 28 28 H 1.08995 * 109.50645 * 182.40887 * 12 11 9 29 29 H 1.08996 * 109.50148 * 62.28232 * 12 11 9 30 30 H 1.08996 * 109.46405 * 299.16393 * 13 12 11 31 31 H 1.09000 * 109.46178 * 179.19413 * 13 12 11 32 32 H 1.09001 * 109.46548 * 306.03734 * 15 14 13 33 33 H 1.08997 * 109.46958 * 186.04699 * 15 14 13 34 34 H 1.07998 * 119.95191 * 359.97438 * 17 16 15 35 35 H 1.08003 * 120.01524 * 180.02562 * 18 17 16 36 36 H 0.96698 * 113.99921 * 270.26240 * 20 19 18 37 37 H 1.08000 * 119.98716 * 0.02562 * 23 16 15 38 38 H 1.09001 * 109.46164 * 181.75840 * 24 14 13 39 39 H 1.09000 * 109.46275 * 301.72700 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6257 -2.5582 0.8902 11 6 0.3701 -2.5807 -1.2502 12 6 -0.3464 -3.9338 -1.2725 13 6 0.6932 -5.0565 -1.2407 14 7 1.5099 -4.9349 -0.0264 15 6 2.4269 -6.0747 0.1077 16 6 3.4379 -6.0402 -1.0093 17 6 3.1728 -6.6906 -2.2002 18 6 4.0973 -6.6606 -3.2267 19 6 5.2905 -5.9732 -3.0645 20 8 6.1992 -5.9382 -4.0752 21 6 5.5579 -5.3249 -1.8654 22 9 6.7216 -4.6583 -1.7017 23 6 4.6289 -5.3587 -0.8410 24 6 2.2443 -3.6634 -0.0056 25 1 -0.4850 0.8400 0.0004 26 1 0.9910 -2.4826 -2.1406 27 1 -0.3673 -1.7784 -1.2290 28 1 -0.9421 -4.0152 -2.1816 29 1 -0.9969 -4.0155 -0.4018 30 1 1.3348 -4.9825 -2.1188 31 1 0.1860 -6.0213 -1.2421 32 1 1.8605 -7.0046 0.0566 33 1 2.9423 -6.0155 1.0663 34 1 2.2419 -7.2229 -2.3283 35 1 3.8887 -7.1688 -4.1566 36 1 6.8389 -6.6631 -4.0542 37 1 4.8341 -4.8521 0.0905 38 1 2.8636 -3.6163 0.8901 39 1 2.8786 -3.5959 -0.8895 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895310616.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:49 Heat of formation + Delta-G solvation = -89.331194 kcal Electronic energy + Delta-G solvation = -22230.492304 eV Core-core repulsion = 18858.228487 eV Total energy + Delta-G solvation = -3372.263816 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.97672 -41.07172 -39.60956 -37.81286 -35.55345 -33.72959 -32.00703 -31.43153 -30.71980 -27.09282 -26.89588 -24.16125 -23.91746 -22.89745 -22.28793 -20.29751 -19.60251 -18.50220 -17.99388 -17.74388 -17.07377 -16.79559 -16.22720 -16.11937 -15.73793 -15.56037 -15.02802 -14.94979 -14.77108 -14.40137 -14.14783 -13.98629 -13.44551 -13.31535 -12.89755 -12.87778 -12.73036 -12.68240 -12.54056 -12.19257 -11.77175 -11.71181 -11.64250 -11.38099 -10.88243 -10.66600 -10.38624 -9.93750 -9.58174 -9.14887 -8.09804 -6.23306 -0.01116 0.11941 1.37379 1.38334 1.48274 2.38605 2.42416 2.94556 3.16941 3.20919 3.30877 3.68002 3.82110 4.17898 4.18872 4.26389 4.29596 4.39542 4.51796 4.67845 4.72943 4.80137 4.93179 4.95529 4.95903 4.98886 5.04012 5.13142 5.15454 5.20575 5.38010 5.46703 5.54480 5.62675 5.73861 5.97133 6.12310 6.21098 6.36345 6.45723 6.68206 6.89383 7.44284 8.94573 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016677 B = 0.005680 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.578149 B = 4928.598713 C = 5936.650124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.017 3.983 3 Si 0.947 3.053 4 H -0.278 1.278 5 H -0.279 1.279 6 H -0.271 1.271 7 C -0.536 4.536 8 H 0.045 0.955 9 C 0.051 3.949 10 H -0.001 1.001 11 C -0.104 4.104 12 C -0.113 4.113 13 C 0.062 3.938 14 N -0.533 5.533 15 C 0.092 3.908 16 C -0.100 4.100 17 C -0.096 4.096 18 C -0.115 4.115 19 C 0.065 3.935 20 O -0.501 6.501 21 C 0.042 3.958 22 F -0.150 7.150 23 C -0.136 4.136 24 C 0.084 3.916 25 H 0.261 0.739 26 H 0.015 0.985 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.029 0.971 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.086 0.914 34 H 0.162 0.838 35 H 0.166 0.834 36 H 0.410 0.590 37 H 0.130 0.870 38 H 0.052 0.948 39 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.308 -18.276 -5.321 20.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.182 4.182 3 Si 0.773 3.227 4 H -0.204 1.204 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.575 4.575 8 H 0.063 0.937 9 C 0.033 3.967 10 H 0.017 0.983 11 C -0.143 4.143 12 C -0.150 4.150 13 C -0.065 4.065 14 N -0.255 5.255 15 C -0.036 4.036 16 C -0.102 4.102 17 C -0.115 4.115 18 C -0.133 4.133 19 C 0.019 3.981 20 O -0.314 6.314 21 C 0.023 3.977 22 F -0.128 7.128 23 C -0.156 4.156 24 C -0.044 4.044 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.119 0.881 32 H 0.134 0.866 33 H 0.104 0.896 34 H 0.180 0.820 35 H 0.183 0.817 36 H 0.269 0.731 37 H 0.148 0.852 38 H 0.070 0.930 39 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 5.569 -17.630 -5.051 19.167 hybrid contribution 1.684 1.382 -0.397 2.215 sum 7.254 -16.248 -5.448 18.609 Atomic orbital electron populations 1.70016 1.06974 1.27015 1.51211 1.25649 0.95644 1.02044 0.94840 0.85722 0.78863 0.79937 0.78152 1.20391 1.20439 1.19543 1.21509 0.92728 0.92502 1.50769 0.93701 1.18595 0.93044 0.91287 0.93808 0.98308 1.21455 0.98992 0.96771 0.97060 1.21605 0.97708 0.94704 1.01015 1.22138 0.94763 0.99383 0.90252 1.62359 1.22935 1.01845 1.38402 1.21463 0.91269 0.95364 0.95472 1.20763 0.94476 0.96444 0.98503 1.21379 1.00056 0.98565 0.91457 1.21599 0.92265 0.98518 1.00915 1.18609 0.92918 1.00362 0.86178 1.84839 1.45370 1.54802 1.46347 1.18461 0.83963 0.99426 0.95865 1.91444 1.46518 1.78808 1.96063 1.21162 0.94139 1.01299 0.99004 1.21943 0.95242 0.89053 0.98133 0.93023 0.96638 0.92547 0.91249 0.92849 0.95239 0.88126 0.86552 0.89579 0.82000 0.81667 0.73063 0.85209 0.92979 0.96748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.89 11.35 21.45 0.24 -53.65 16 2 C 0.02 0.98 5.30 84.66 0.45 1.43 16 3 Si 0.95 45.15 29.54 68.60 2.03 47.17 16 4 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.54 -30.72 8.57 25.60 0.22 -30.50 16 8 H 0.04 2.56 7.74 -2.91 -0.02 2.54 16 9 C 0.05 2.66 2.26 -11.49 -0.03 2.63 16 10 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 11 C -0.10 -5.08 5.02 30.68 0.15 -4.92 16 12 C -0.11 -4.18 6.09 30.65 0.19 -3.99 16 13 C 0.06 1.88 4.82 86.33 0.42 2.30 16 14 N -0.53 -17.62 4.86 -900.92 -4.38 -22.00 16 15 C 0.09 2.21 5.55 85.55 0.48 2.68 16 16 C -0.10 -2.45 4.04 -19.86 -0.08 -2.53 16 17 C -0.10 -1.90 8.10 22.26 0.18 -1.72 16 18 C -0.11 -2.28 9.98 22.36 0.22 -2.06 16 19 C 0.07 1.63 6.71 22.53 0.15 1.78 16 20 O -0.50 -11.17 13.37 -93.01 -1.24 -12.42 16 21 C 0.04 1.26 7.31 22.45 0.16 1.42 16 22 F -0.15 -4.89 17.11 44.97 0.77 -4.12 16 23 C -0.14 -3.92 7.98 22.30 0.18 -3.74 16 24 C 0.08 3.53 3.76 86.32 0.32 3.86 16 25 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 26 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 3.11 6.15 -2.39 -0.01 3.09 16 28 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.03 0.91 6.55 -2.39 -0.02 0.89 16 31 H 0.10 2.27 8.06 -2.39 -0.02 2.25 16 32 H 0.12 2.04 8.00 -2.39 -0.02 2.02 16 33 H 0.09 2.03 8.08 -2.39 -0.02 2.01 16 34 H 0.16 2.23 8.03 -2.91 -0.02 2.21 16 35 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 36 H 0.41 4.61 9.06 -74.06 -0.67 3.94 16 37 H 0.13 3.84 8.02 -2.91 -0.02 3.82 16 38 H 0.05 2.20 8.12 -2.39 -0.02 2.18 16 39 H 0.01 0.63 6.46 -2.39 -0.02 0.62 16 Total: -1.00 -69.05 316.30 0.82 -68.23 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: 0.39 Total: 10.16 kcal Atomic # 6 Polarization: -36.40 SS G_CDS: 3.02 Total: -33.38 kcal Atomic # 7 Polarization: -71.51 SS G_CDS: -4.13 Total: -75.65 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: -1.24 Total: -12.42 kcal Atomic # 9 Polarization: -4.89 SS G_CDS: 0.77 Total: -4.12 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -69.05 0.82 -68.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895310616.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.103 kcal (2) G-P(sol) polarization free energy of solvation -69.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds