Wall clock time and date at job start Wed Apr 15 2020 11:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99925 * 2 1 4 4 H 1.48504 * 109.46885 * 269.99832 * 3 2 1 5 5 H 1.48497 * 109.47239 * 29.99674 * 3 2 1 6 6 H 1.48499 * 109.47198 * 149.99918 * 3 2 1 7 7 C 1.37878 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00048 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99829 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.50309 * 59.92501 * 9 7 2 11 11 C 1.53120 * 109.50402 * 299.79997 * 9 7 2 12 12 C 1.53120 * 109.15972 * 182.40395 * 11 9 7 13 13 C 1.53034 * 109.27663 * 57.65936 * 12 11 9 14 14 N 1.46850 * 109.52564 * 300.81923 * 13 12 11 15 15 C 1.46895 * 110.99945 * 185.83944 * 14 13 12 16 16 C 1.50701 * 109.47508 * 45.79090 * 15 14 13 17 17 C 1.38255 * 119.93639 * 89.99527 * 16 15 14 18 18 C 1.38187 * 120.09684 * 179.97438 * 17 16 15 19 19 C 1.38662 * 119.96543 * 359.97438 * 18 17 16 20 20 O 1.35950 * 120.06283 * 180.02562 * 19 18 17 21 21 C 1.38910 * 119.87671 * 0.02562 * 19 18 17 22 22 F 1.35090 * 120.05003 * 180.02562 * 21 19 18 23 23 C 1.38251 * 119.93617 * 269.72277 * 16 15 14 24 24 C 1.46850 * 111.19713 * 61.73898 * 14 13 12 25 25 H 0.96991 * 119.99983 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.52458 * 302.31729 * 11 9 7 27 27 H 1.08999 * 109.51695 * 62.44011 * 11 9 7 28 28 H 1.09000 * 109.49976 * 177.59581 * 12 11 9 29 29 H 1.08997 * 109.50809 * 297.71813 * 12 11 9 30 30 H 1.09007 * 109.46201 * 60.83416 * 13 12 11 31 31 H 1.09001 * 109.46285 * 180.81057 * 13 12 11 32 32 H 1.09001 * 109.46962 * 165.78905 * 15 14 13 33 33 H 1.09002 * 109.47442 * 285.78739 * 15 14 13 34 34 H 1.08001 * 119.95788 * 359.95724 * 17 16 15 35 35 H 1.08000 * 120.01820 * 180.02562 * 18 17 16 36 36 H 0.96699 * 114.00151 * 89.99868 * 20 19 18 37 37 H 1.08002 * 119.98260 * 0.02562 * 23 16 15 38 38 H 1.08995 * 109.45831 * 178.23975 * 24 14 13 39 39 H 1.08998 * 109.45719 * 58.27825 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6235 -2.5571 -0.8888 11 6 0.3737 -2.5830 1.2527 12 6 -0.3420 -3.9364 1.2753 13 6 0.6980 -5.0585 1.2390 14 7 1.5112 -4.9348 0.0224 15 6 2.4283 -6.0740 -0.1157 16 6 1.6823 -7.3552 0.1545 17 6 1.0624 -8.0248 -0.8841 18 6 0.3779 -9.2002 -0.6402 19 6 0.3130 -9.7094 0.6479 20 8 -0.3594 -10.8658 0.8901 21 6 0.9364 -9.0355 1.6905 22 9 0.8759 -9.5287 2.9467 23 6 1.6240 -7.8617 1.4395 24 6 2.2449 -3.6629 0.0012 25 1 -0.4850 0.8400 -0.0004 26 1 0.9971 -2.4856 2.1414 27 1 -0.3635 -1.7803 1.2352 28 1 -0.9350 -4.0193 2.1860 29 1 -0.9950 -4.0174 0.4064 30 1 1.3421 -4.9852 2.1154 31 1 0.1913 -6.0235 1.2404 32 1 2.8316 -6.0950 -1.1282 33 1 3.2452 -5.9716 0.5986 34 1 1.1128 -7.6287 -1.8876 35 1 -0.1056 -9.7225 -1.4525 36 1 0.1859 -11.6609 0.8154 37 1 2.1126 -7.3388 2.2485 38 1 2.8616 -3.6144 -0.8962 39 1 2.8816 -3.5962 0.8833 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895310617.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:51 Heat of formation + Delta-G solvation = -86.658278 kcal Electronic energy + Delta-G solvation = -21698.459905 eV Core-core repulsion = 18326.311995 eV Total energy + Delta-G solvation = -3372.147910 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.94431 -40.94963 -39.63668 -37.89676 -35.54128 -33.69901 -31.98637 -31.52364 -30.84832 -27.00536 -26.85634 -24.00168 -23.84926 -23.30996 -22.00539 -20.34803 -19.59857 -18.46708 -17.91291 -17.71848 -17.09888 -16.75673 -16.42174 -16.12244 -15.74697 -15.41032 -14.95331 -14.92022 -14.62417 -14.55839 -14.29830 -13.88377 -13.57480 -13.28116 -12.91697 -12.85303 -12.75576 -12.65360 -12.43472 -12.29841 -11.82208 -11.71436 -11.60086 -11.37084 -10.87584 -10.65176 -10.37373 -9.91818 -9.59096 -9.09512 -8.06451 -6.20502 0.00302 0.13297 1.42730 1.43431 1.53269 2.37413 2.45792 2.95444 3.20848 3.23243 3.31545 3.63468 3.80002 4.15259 4.18370 4.22070 4.27633 4.38080 4.54250 4.59683 4.66673 4.75080 4.84307 4.88980 4.94362 4.99594 5.03047 5.10285 5.17702 5.19029 5.38208 5.50918 5.53732 5.64960 5.74065 5.96475 6.12236 6.20997 6.30819 6.46263 6.72095 6.92615 7.47535 8.98267 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.039230 B = 0.003595 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.566942 B = 7786.253239 C = 7922.148753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 0.954 3.046 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.535 4.535 8 H 0.054 0.946 9 C 0.052 3.948 10 H -0.001 1.001 11 C -0.103 4.103 12 C -0.112 4.112 13 C 0.067 3.933 14 N -0.539 5.539 15 C 0.091 3.909 16 C -0.061 4.061 17 C -0.090 4.090 18 C -0.112 4.112 19 C 0.070 3.930 20 O -0.500 6.500 21 C 0.051 3.949 22 F -0.145 7.145 23 C -0.137 4.137 24 C 0.081 3.919 25 H 0.260 0.740 26 H 0.021 0.979 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.024 0.976 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.045 0.955 34 H 0.153 0.847 35 H 0.164 0.836 36 H 0.411 0.589 37 H 0.136 0.864 38 H 0.066 0.934 39 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.296 -20.246 -0.308 20.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.185 4.185 3 Si 0.780 3.220 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.573 4.573 8 H 0.072 0.928 9 C 0.033 3.967 10 H 0.017 0.983 11 C -0.142 4.142 12 C -0.150 4.150 13 C -0.061 4.061 14 N -0.263 5.263 15 C -0.036 4.036 16 C -0.062 4.062 17 C -0.108 4.108 18 C -0.130 4.130 19 C 0.024 3.976 20 O -0.313 6.313 21 C 0.031 3.969 22 F -0.124 7.124 23 C -0.156 4.156 24 C -0.046 4.046 25 H 0.069 0.931 26 H 0.040 0.960 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.098 0.902 32 H 0.119 0.881 33 H 0.064 0.936 34 H 0.171 0.829 35 H 0.182 0.818 36 H 0.271 0.729 37 H 0.154 0.846 38 H 0.084 0.916 39 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 2.372 -19.788 -0.566 19.938 hybrid contribution 1.109 0.845 1.101 1.777 sum 3.481 -18.943 0.535 19.268 Atomic orbital electron populations 1.70041 1.07213 1.27020 1.51284 1.25724 0.95629 1.02346 0.94848 0.85622 0.78712 0.79477 0.78224 1.20088 1.21126 1.19269 1.21532 0.93069 0.92087 1.50661 0.92814 1.18590 0.93024 0.91397 0.93642 0.98264 1.21463 0.99137 0.95974 0.97594 1.21590 0.97629 0.95116 1.00628 1.22073 0.95163 0.98692 0.90188 1.62109 1.24320 1.01758 1.38148 1.21173 0.92918 0.86439 1.03030 1.19670 0.98343 0.95782 0.92405 1.21272 0.95436 0.93833 1.00279 1.21564 0.98854 0.97072 0.95519 1.18556 0.96705 0.90521 0.91832 1.84828 1.38809 1.15077 1.92610 1.18245 1.02508 0.96434 0.79667 1.91455 1.95060 1.87477 1.38433 1.21079 1.01090 0.95060 0.98403 1.22016 0.95288 0.88324 0.98983 0.93136 0.95973 0.92485 0.91875 0.93106 0.95756 0.90218 0.88112 0.93632 0.82928 0.81848 0.72943 0.84618 0.91592 0.96442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.40 11.36 21.45 0.24 -53.16 16 2 C 0.01 0.73 5.30 84.65 0.45 1.18 16 3 Si 0.95 43.58 29.54 68.60 2.03 45.61 16 4 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 7 C -0.53 -29.43 8.56 25.60 0.22 -29.21 16 8 H 0.05 2.88 7.74 -2.91 -0.02 2.85 16 9 C 0.05 2.64 2.26 -11.49 -0.03 2.61 16 10 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 11 C -0.10 -5.02 5.03 30.67 0.15 -4.86 16 12 C -0.11 -4.43 6.09 30.65 0.19 -4.25 16 13 C 0.07 2.27 4.58 86.32 0.40 2.67 16 14 N -0.54 -18.46 4.80 -900.93 -4.32 -22.78 16 15 C 0.09 2.35 5.43 85.56 0.46 2.81 16 16 C -0.06 -1.40 4.11 -19.86 -0.08 -1.49 16 17 C -0.09 -1.73 9.69 22.26 0.22 -1.52 16 18 C -0.11 -1.96 9.99 22.36 0.22 -1.74 16 19 C 0.07 1.44 6.71 22.53 0.15 1.59 16 20 O -0.50 -9.07 13.37 -92.99 -1.24 -10.31 16 21 C 0.05 1.22 7.31 22.45 0.16 1.38 16 22 F -0.15 -3.80 17.11 44.97 0.77 -3.03 16 23 C -0.14 -3.21 7.78 22.30 0.17 -3.04 16 24 C 0.08 3.31 4.65 86.33 0.40 3.71 16 25 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 26 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.06 3.14 6.16 -2.39 -0.01 3.12 16 28 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.02 0.82 8.14 -2.38 -0.02 0.81 16 31 H 0.08 2.49 5.65 -2.39 -0.01 2.47 16 32 H 0.10 2.28 8.08 -2.39 -0.02 2.26 16 33 H 0.05 1.14 8.02 -2.39 -0.02 1.12 16 34 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 35 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 36 H 0.41 3.15 9.06 -74.06 -0.67 2.48 16 37 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 38 H 0.07 2.59 8.12 -2.39 -0.02 2.57 16 39 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -64.75 319.18 0.95 -63.81 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 0.38 Total: 10.00 kcal Atomic # 6 Polarization: -33.24 SS G_CDS: 3.09 Total: -30.15 kcal Atomic # 7 Polarization: -71.86 SS G_CDS: -4.08 Total: -75.94 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -1.24 Total: -10.31 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.77 Total: -3.03 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -64.75 0.95 -63.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895310617.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.851 kcal (2) G-P(sol) polarization free energy of solvation -64.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds