Wall clock time and date at job start Wed Apr 15 2020 11:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99830 * 2 1 4 4 H 1.48508 * 109.46862 * 269.99418 * 3 2 1 5 5 H 1.48497 * 109.47541 * 29.99501 * 3 2 1 6 6 H 1.48506 * 109.47227 * 150.00172 * 3 2 1 7 7 C 1.37878 * 120.00490 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99509 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00511 * 179.97438 * 7 2 1 10 10 H 1.08996 * 109.47202 * 300.00680 * 9 7 2 11 11 O 1.42905 * 109.46640 * 60.00642 * 9 7 2 12 12 C 1.53000 * 109.47198 * 180.02562 * 9 7 2 13 13 N 1.46906 * 109.47072 * 180.02562 * 12 9 7 14 14 C 1.48560 * 110.99659 * 285.42352 * 13 12 9 15 15 C 1.54386 * 104.59321 * 200.96075 * 14 13 12 16 16 C 1.54259 * 105.05829 * 23.84795 * 15 14 13 17 17 C 1.48558 * 111.00058 * 170.00065 * 13 12 9 18 18 H 1.08998 * 110.41028 * 40.14062 * 17 13 12 19 19 C 1.50699 * 110.41283 * 277.81725 * 17 13 12 20 20 C 1.38262 * 119.98546 * 319.72775 * 19 17 13 21 21 C 1.38230 * 120.05126 * 179.76879 * 20 19 17 22 22 C 1.38217 * 120.02057 * 0.50009 * 21 20 19 23 23 C 1.38438 * 119.97900 * 359.75171 * 22 21 20 24 24 F 1.35095 * 120.02821 * 179.97438 * 23 22 21 25 25 C 1.38175 * 119.98516 * 139.99996 * 19 17 13 26 26 H 0.97000 * 120.00226 * 0.02562 * 1 2 3 27 27 H 0.96699 * 114.00063 * 60.00410 * 11 9 7 28 28 H 1.08993 * 109.47007 * 60.00472 * 12 9 7 29 29 H 1.08996 * 109.47340 * 300.00278 * 12 9 7 30 30 H 1.08996 * 110.41118 * 319.73083 * 14 13 12 31 31 H 1.08992 * 110.41578 * 82.17914 * 14 13 12 32 32 H 1.08996 * 110.32013 * 264.95515 * 15 14 13 33 33 H 1.08997 * 110.32638 * 142.74630 * 15 14 13 34 34 H 1.09000 * 110.32708 * 241.10491 * 16 15 14 35 35 H 1.09003 * 110.32443 * 118.90197 * 16 15 14 36 36 H 1.08002 * 119.97793 * 0.02562 * 20 19 17 37 37 H 1.08004 * 119.98921 * 180.25249 * 21 20 19 38 38 H 1.07999 * 120.00938 * 179.72754 * 22 21 20 39 39 H 1.07998 * 120.01395 * 359.97438 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8746 -0.6807 -0.8904 11 8 3.9883 -0.5197 1.1662 12 6 4.0216 -2.6365 0.0001 13 7 5.4907 -2.6365 0.0001 14 6 6.0230 -2.2677 -1.3369 15 6 7.4649 -2.8193 -1.3471 16 6 7.4649 -3.9603 -0.3090 17 6 6.0231 -4.0023 0.2411 18 1 5.4303 -4.7418 -0.2972 19 6 6.0321 -4.3103 1.7162 20 6 6.4048 -3.3357 2.6233 21 6 6.4089 -3.6152 3.9771 22 6 6.0503 -4.8728 4.4246 23 6 5.6819 -5.8510 3.5169 24 9 5.3317 -7.0807 3.9532 25 6 5.6732 -5.5682 2.1613 26 1 -0.4850 0.8400 -0.0004 27 1 3.7033 -0.9228 1.9977 28 1 3.6580 -3.1505 -0.8896 29 1 3.6586 -3.1502 0.8902 30 1 5.4316 -2.7356 -2.1238 31 1 6.0295 -1.1846 -1.4580 32 1 8.1699 -2.0412 -1.0544 33 1 7.7154 -3.2061 -2.3349 34 1 8.1700 -3.7424 0.4932 35 1 7.7154 -4.9072 -0.7873 36 1 6.6889 -2.3539 2.2743 37 1 6.6963 -2.8519 4.6851 38 1 6.0578 -5.0923 5.4820 39 1 5.3860 -6.3305 1.4522 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809572443.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:39 Heat of formation + Delta-G solvation = -64.152339 kcal Electronic energy + Delta-G solvation = -22085.068886 eV Core-core repulsion = 18713.896906 eV Total energy + Delta-G solvation = -3371.171979 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 3.97 seconds Orbital eigenvalues (eV) -48.84201 -39.80398 -37.94602 -35.86889 -32.21086 -31.97695 -31.76761 -30.40050 -28.05417 -27.67458 -24.62738 -22.82167 -22.65621 -21.31751 -20.13028 -19.88482 -17.48022 -17.16300 -16.32698 -16.00808 -15.55148 -15.42188 -15.10977 -14.67329 -14.46809 -14.26828 -13.93119 -13.51932 -13.07282 -12.84143 -12.74362 -12.53187 -12.42378 -12.09584 -11.69446 -11.43656 -11.38182 -11.09287 -10.90466 -10.86840 -10.72107 -10.44519 -10.32857 -9.88866 -9.02572 -8.91477 -8.61112 -8.54003 -8.27535 -7.98864 -6.11692 -4.22953 1.23878 1.28468 3.39848 3.49605 3.64017 3.77248 4.10520 4.42538 4.55184 4.66123 4.79846 4.86512 4.95829 5.07331 5.19092 5.24160 5.36235 5.39809 5.46254 5.62506 5.78556 5.84743 5.86930 5.90402 5.91201 6.02012 6.14266 6.15168 6.21478 6.28490 6.30935 6.45837 6.60598 6.64499 6.97841 7.12122 7.33409 7.44489 7.68035 8.30718 8.84983 9.12320 9.53363 10.99051 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.017088 B = 0.005497 C = 0.004739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.186188 B = 5092.104677 C = 5907.103744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.084 3.916 3 Si 0.871 3.129 4 H -0.289 1.289 5 H -0.297 1.297 6 H -0.214 1.214 7 C -0.566 4.566 8 H 0.070 0.930 9 C 0.207 3.793 10 H 0.051 0.949 11 O -0.569 6.569 12 C 0.030 3.970 13 N -0.491 5.491 14 C 0.033 3.967 15 C -0.123 4.123 16 C -0.113 4.113 17 C 0.094 3.906 18 H 0.057 0.943 19 C -0.037 4.037 20 C -0.091 4.091 21 C -0.096 4.096 22 C -0.159 4.159 23 C 0.090 3.910 24 F -0.146 7.146 25 C -0.153 4.153 26 H 0.264 0.736 27 H 0.353 0.647 28 H 0.035 0.965 29 H 0.068 0.932 30 H 0.042 0.958 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.142 0.858 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.343 -9.024 3.223 18.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.121 4.121 3 Si 0.697 3.303 4 H -0.216 1.216 5 H -0.223 1.223 6 H -0.137 1.137 7 C -0.604 4.604 8 H 0.088 0.912 9 C 0.149 3.851 10 H 0.068 0.932 11 O -0.374 6.374 12 C -0.098 4.098 13 N -0.214 5.214 14 C -0.095 4.095 15 C -0.161 4.161 16 C -0.151 4.151 17 C -0.015 4.015 18 H 0.075 0.925 19 C -0.037 4.037 20 C -0.110 4.110 21 C -0.114 4.114 22 C -0.178 4.178 23 C 0.071 3.929 24 F -0.124 7.124 25 C -0.172 4.172 26 H 0.074 0.926 27 H 0.199 0.801 28 H 0.053 0.947 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.159 0.841 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 16.609 -8.206 3.196 18.799 hybrid contribution -0.719 -0.467 -0.268 0.898 sum 15.890 -8.673 2.928 18.338 Atomic orbital electron populations 1.69962 1.06819 1.27438 1.48924 1.24982 0.94588 0.99979 0.92504 0.87029 0.83202 0.81734 0.78290 1.21568 1.22340 1.13659 1.21526 0.90001 0.94748 1.54104 0.91229 1.19612 0.92879 0.86688 0.85942 0.93155 1.86651 1.77901 1.56865 1.16005 1.23019 0.84891 1.01415 1.00478 1.65386 1.09905 1.19381 1.26764 1.23107 0.94202 1.01711 0.90516 1.22306 0.97381 0.97883 0.98533 1.22318 0.95471 0.98610 0.98663 1.21561 0.96090 0.92598 0.91237 0.92490 1.19511 0.96677 0.92214 0.95328 1.21201 0.97835 0.99983 0.91948 1.21063 0.98595 0.95594 0.96136 1.21103 1.03426 0.93705 0.99556 1.17604 1.01980 0.80615 0.92734 1.91472 1.89901 1.40756 1.90297 1.20982 1.04059 0.98250 0.93892 0.92621 0.80148 0.94670 0.91312 0.93932 0.89758 0.91055 0.91665 0.90871 0.91537 0.84061 0.85151 0.85256 0.85304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.37 13.96 55.43 0.77 -26.60 16 2 C 0.08 2.41 5.47 -17.82 -0.10 2.31 16 3 Si 0.87 21.79 26.99 -169.99 -4.59 17.20 16 4 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.21 -5.23 5.30 56.52 0.30 -4.93 16 7 C -0.57 -15.63 9.34 -34.44 -0.32 -15.95 16 8 H 0.07 2.09 7.99 -52.48 -0.42 1.67 16 9 C 0.21 4.73 2.37 -27.88 -0.07 4.67 16 10 H 0.05 1.20 6.90 -51.93 -0.36 0.84 16 11 O -0.57 -12.75 10.01 -35.23 -0.35 -13.11 16 12 C 0.03 0.57 4.38 -3.82 -0.02 0.56 16 13 N -0.49 -7.81 4.20 -223.51 -0.94 -8.75 16 14 C 0.03 0.47 5.91 -2.18 -0.01 0.46 16 15 C -0.12 -1.38 7.00 -25.35 -0.18 -1.56 16 16 C -0.11 -1.25 6.52 -25.35 -0.17 -1.41 16 17 C 0.09 1.26 2.45 -67.22 -0.16 1.10 16 18 H 0.06 0.78 7.88 -51.93 -0.41 0.37 16 19 C -0.04 -0.49 4.53 -104.64 -0.47 -0.97 16 20 C -0.09 -1.20 9.14 -39.58 -0.36 -1.56 16 21 C -0.10 -1.12 10.04 -39.59 -0.40 -1.51 16 22 C -0.16 -1.89 10.03 -39.52 -0.40 -2.29 16 23 C 0.09 1.19 7.30 -39.42 -0.29 0.90 16 24 F -0.15 -1.99 17.27 2.25 0.04 -1.95 16 25 C -0.15 -2.00 9.66 -39.51 -0.38 -2.38 16 26 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 27 H 0.35 7.26 9.04 45.56 0.41 7.67 16 28 H 0.04 0.69 7.77 -51.93 -0.40 0.28 16 29 H 0.07 1.37 7.78 -51.93 -0.40 0.96 16 30 H 0.04 0.62 7.75 -51.93 -0.40 0.21 16 31 H 0.08 1.30 7.85 -51.93 -0.41 0.89 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.79 7.70 -51.93 -0.40 0.39 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.14 1.93 7.76 -52.49 -0.41 1.52 16 37 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 38 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.13 1.53 8.04 -52.49 -0.42 1.10 16 LS Contribution 321.39 15.07 4.84 4.84 Total: -1.00 -30.69 321.39 -8.52 -39.21 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -4.97 Total: 6.78 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -3.32 Total: -17.63 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: -0.17 Total: -35.35 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -0.35 Total: -13.11 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.59 Total: 17.20 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.69 -8.52 -39.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809572443.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.942 kcal (2) G-P(sol) polarization free energy of solvation -30.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.98 seconds