Wall clock time and date at job start Wed Apr 15 2020 11:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99830 * 2 1 4 4 H 1.48508 * 109.46862 * 269.99418 * 3 2 1 5 5 H 1.48497 * 109.47541 * 29.99501 * 3 2 1 6 6 H 1.48506 * 109.47227 * 150.00172 * 3 2 1 7 7 C 1.37878 * 120.00490 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99509 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00511 * 179.97438 * 7 2 1 10 10 H 1.08996 * 109.47202 * 300.00680 * 9 7 2 11 11 O 1.42905 * 109.46640 * 60.00642 * 9 7 2 12 12 C 1.53000 * 109.47198 * 180.02562 * 9 7 2 13 13 N 1.46906 * 109.47072 * 180.02562 * 12 9 7 14 14 C 1.48560 * 110.99659 * 285.42352 * 13 12 9 15 15 C 1.54386 * 104.59321 * 200.96075 * 14 13 12 16 16 C 1.54259 * 105.05829 * 23.84795 * 15 14 13 17 17 C 1.48558 * 111.00058 * 170.00065 * 13 12 9 18 18 H 1.08998 * 110.41028 * 40.14062 * 17 13 12 19 19 C 1.50699 * 110.41283 * 277.81725 * 17 13 12 20 20 C 1.38262 * 119.98546 * 319.72775 * 19 17 13 21 21 C 1.38230 * 120.05126 * 179.76879 * 20 19 17 22 22 C 1.38217 * 120.02057 * 0.50009 * 21 20 19 23 23 C 1.38438 * 119.97900 * 359.75171 * 22 21 20 24 24 F 1.35095 * 120.02821 * 179.97438 * 23 22 21 25 25 C 1.38175 * 119.98516 * 139.99996 * 19 17 13 26 26 H 0.97000 * 120.00226 * 0.02562 * 1 2 3 27 27 H 0.96699 * 114.00063 * 60.00410 * 11 9 7 28 28 H 1.08993 * 109.47007 * 60.00472 * 12 9 7 29 29 H 1.08996 * 109.47340 * 300.00278 * 12 9 7 30 30 H 1.08996 * 110.41118 * 319.73083 * 14 13 12 31 31 H 1.08992 * 110.41578 * 82.17914 * 14 13 12 32 32 H 1.08996 * 110.32013 * 264.95515 * 15 14 13 33 33 H 1.08997 * 110.32638 * 142.74630 * 15 14 13 34 34 H 1.09000 * 110.32708 * 241.10491 * 16 15 14 35 35 H 1.09003 * 110.32443 * 118.90197 * 16 15 14 36 36 H 1.08002 * 119.97793 * 0.02562 * 20 19 17 37 37 H 1.08004 * 119.98921 * 180.25249 * 21 20 19 38 38 H 1.07999 * 120.00938 * 179.72754 * 22 21 20 39 39 H 1.07998 * 120.01395 * 359.97438 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8746 -0.6807 -0.8904 11 8 3.9883 -0.5197 1.1662 12 6 4.0216 -2.6365 0.0001 13 7 5.4907 -2.6365 0.0001 14 6 6.0230 -2.2677 -1.3369 15 6 7.4649 -2.8193 -1.3471 16 6 7.4649 -3.9603 -0.3090 17 6 6.0231 -4.0023 0.2411 18 1 5.4303 -4.7418 -0.2972 19 6 6.0321 -4.3103 1.7162 20 6 6.4048 -3.3357 2.6233 21 6 6.4089 -3.6152 3.9771 22 6 6.0503 -4.8728 4.4246 23 6 5.6819 -5.8510 3.5169 24 9 5.3317 -7.0807 3.9532 25 6 5.6732 -5.5682 2.1613 26 1 -0.4850 0.8400 -0.0004 27 1 3.7033 -0.9228 1.9977 28 1 3.6580 -3.1505 -0.8896 29 1 3.6586 -3.1502 0.8902 30 1 5.4316 -2.7356 -2.1238 31 1 6.0295 -1.1846 -1.4580 32 1 8.1699 -2.0412 -1.0544 33 1 7.7154 -3.2061 -2.3349 34 1 8.1700 -3.7424 0.4932 35 1 7.7154 -4.9072 -0.7873 36 1 6.6889 -2.3539 2.2743 37 1 6.6963 -2.8519 4.6851 38 1 6.0578 -5.0923 5.4820 39 1 5.3860 -6.3305 1.4522 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809572443.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:36 Heat of formation + Delta-G solvation = -84.224810 kcal Electronic energy + Delta-G solvation = -22085.939293 eV Core-core repulsion = 18713.896906 eV Total energy + Delta-G solvation = -3372.042387 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.87048 -40.88359 -39.07871 -37.58402 -34.40109 -33.21211 -32.83798 -31.37878 -29.83185 -28.68934 -26.35099 -23.92961 -23.62906 -22.75704 -21.30728 -21.18396 -19.36788 -18.28733 -17.41993 -16.99503 -16.83074 -16.67393 -16.55833 -16.18161 -16.05840 -15.83571 -15.02859 -14.84005 -14.58531 -14.10990 -13.98750 -13.83125 -13.58999 -13.46093 -13.09841 -12.90796 -12.67478 -12.36577 -12.35776 -12.19379 -12.07516 -11.79499 -11.68838 -11.34605 -11.05792 -10.80153 -10.12141 -9.86056 -9.52635 -9.35448 -8.35188 -6.50161 0.26781 0.30504 1.40522 1.46220 1.77160 2.44871 2.65404 2.98008 3.04048 3.36752 3.65345 3.79003 3.88749 4.00203 4.09195 4.18283 4.21753 4.33659 4.38605 4.40197 4.52086 4.53939 4.69854 4.83997 4.89602 4.97317 5.01130 5.06557 5.19020 5.21236 5.24123 5.31085 5.44153 5.47763 5.50533 5.63541 5.99471 6.05447 6.09829 6.12200 6.62448 7.22589 7.37779 8.79267 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.017088 B = 0.005497 C = 0.004739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.186188 B = 5092.104677 C = 5907.103744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.028 3.972 3 Si 0.940 3.060 4 H -0.285 1.285 5 H -0.299 1.299 6 H -0.201 1.201 7 C -0.568 4.568 8 H 0.031 0.969 9 C 0.217 3.783 10 H 0.048 0.952 11 O -0.568 6.568 12 C 0.047 3.953 13 N -0.494 5.494 14 C 0.025 3.975 15 C -0.113 4.113 16 C -0.106 4.106 17 C 0.093 3.907 18 H 0.053 0.947 19 C -0.047 4.047 20 C -0.099 4.099 21 C -0.092 4.092 22 C -0.158 4.158 23 C 0.074 3.926 24 F -0.151 7.151 25 C -0.161 4.161 26 H 0.266 0.734 27 H 0.362 0.638 28 H 0.025 0.975 29 H 0.058 0.942 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.136 0.864 37 H 0.156 0.844 38 H 0.151 0.849 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.943 -8.701 3.661 21.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.171 4.171 3 Si 0.764 3.236 4 H -0.212 1.212 5 H -0.226 1.226 6 H -0.123 1.123 7 C -0.606 4.606 8 H 0.049 0.951 9 C 0.158 3.842 10 H 0.066 0.934 11 O -0.374 6.374 12 C -0.081 4.081 13 N -0.218 5.218 14 C -0.103 4.103 15 C -0.151 4.151 16 C -0.144 4.144 17 C -0.015 4.015 18 H 0.071 0.929 19 C -0.048 4.048 20 C -0.118 4.118 21 C -0.110 4.110 22 C -0.177 4.177 23 C 0.055 3.945 24 F -0.130 7.130 25 C -0.180 4.180 26 H 0.075 0.925 27 H 0.209 0.791 28 H 0.043 0.957 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.154 0.846 37 H 0.174 0.826 38 H 0.168 0.832 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 19.230 -7.903 3.636 21.106 hybrid contribution -1.561 -0.652 -0.377 1.733 sum 17.669 -8.555 3.259 19.900 Atomic orbital electron populations 1.70092 1.08608 1.28406 1.50996 1.25869 0.95239 1.03709 0.92301 0.85972 0.82105 0.77147 0.78368 1.21204 1.22555 1.12267 1.21872 0.92665 0.93130 1.52946 0.95068 1.19361 0.89796 0.88988 0.86023 0.93450 1.86581 1.77503 1.57036 1.16242 1.22602 0.87484 0.98520 0.99529 1.65297 1.07190 1.21389 1.27878 1.23197 0.96371 1.01214 0.89518 1.22274 0.95013 0.98005 0.99792 1.22318 0.93647 0.99596 0.98802 1.21628 0.97474 0.90843 0.91591 0.92900 1.19551 0.97337 0.92501 0.95372 1.21254 0.98217 0.99636 0.92682 1.21341 0.97598 0.96054 0.96015 1.21385 1.02397 0.93369 1.00508 1.17836 1.02717 0.80820 0.93157 1.91455 1.90063 1.41168 1.90335 1.21091 1.04219 0.98497 0.94242 0.92482 0.79079 0.95669 0.92380 0.94326 0.90877 0.90245 0.89589 0.90311 0.89584 0.84578 0.82616 0.83156 0.84718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.92 13.96 21.45 0.30 -58.62 16 2 C 0.03 1.64 5.47 84.65 0.46 2.10 16 3 Si 0.94 45.11 26.99 68.60 1.85 46.96 16 4 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 5 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 6 H -0.20 -9.14 5.30 99.48 0.53 -8.61 16 7 C -0.57 -31.99 9.34 25.60 0.24 -31.75 16 8 H 0.03 1.95 7.99 -2.91 -0.02 1.92 16 9 C 0.22 9.84 2.37 29.85 0.07 9.91 16 10 H 0.05 2.21 6.90 -2.39 -0.02 2.20 16 11 O -0.57 -24.53 10.01 -148.98 -1.49 -26.02 16 12 C 0.05 1.82 4.38 86.30 0.38 2.20 16 13 N -0.49 -15.15 4.20 -861.04 -3.62 -18.76 16 14 C 0.02 0.68 5.91 86.45 0.51 1.19 16 15 C -0.11 -2.20 7.00 31.49 0.22 -1.98 16 16 C -0.11 -2.04 6.52 31.49 0.21 -1.84 16 17 C 0.09 2.36 2.45 44.32 0.11 2.47 16 18 H 0.05 1.39 7.88 -2.39 -0.02 1.37 16 19 C -0.05 -1.20 4.53 -19.87 -0.09 -1.29 16 20 C -0.10 -2.42 9.14 22.27 0.20 -2.22 16 21 C -0.09 -1.93 10.04 22.26 0.22 -1.70 16 22 C -0.16 -3.42 10.03 22.31 0.22 -3.20 16 23 C 0.07 1.86 7.30 22.38 0.16 2.03 16 24 F -0.15 -4.01 17.27 44.97 0.78 -3.23 16 25 C -0.16 -4.08 9.66 22.31 0.22 -3.86 16 26 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 27 H 0.36 14.40 9.04 -74.06 -0.67 13.73 16 28 H 0.03 1.00 7.77 -2.39 -0.02 0.98 16 29 H 0.06 2.33 7.78 -2.39 -0.02 2.31 16 30 H 0.04 1.08 7.75 -2.39 -0.02 1.06 16 31 H 0.07 2.15 7.85 -2.39 -0.02 2.13 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.08 1.47 7.70 -2.39 -0.02 1.45 16 35 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.14 3.46 7.76 -2.91 -0.02 3.44 16 37 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 38 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 39 H 0.13 3.12 8.04 -2.91 -0.02 3.09 16 Total: -1.00 -66.20 321.39 1.16 -65.04 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: 0.20 Total: 22.57 kcal Atomic # 6 Polarization: -31.08 SS G_CDS: 3.14 Total: -27.94 kcal Atomic # 7 Polarization: -74.07 SS G_CDS: -3.32 Total: -77.38 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -1.49 Total: -26.02 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.78 Total: -3.23 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.85 Total: 46.96 kcal Total: -66.20 1.16 -65.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809572443.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.183 kcal (2) G-P(sol) polarization free energy of solvation -66.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds