Wall clock time and date at job start Wed Apr 15 2020 11:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00129 * 2 1 4 4 H 1.48496 * 109.47319 * 239.99985 * 3 2 1 5 5 H 1.48503 * 109.46734 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47266 * 119.99799 * 3 2 1 7 7 C 1.37878 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00306 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46959 * 299.99551 * 9 7 2 11 11 O 1.42903 * 109.47184 * 59.99808 * 9 7 2 12 12 C 1.53000 * 109.47083 * 179.97438 * 9 7 2 13 13 N 1.46905 * 109.47123 * 179.97438 * 12 9 7 14 14 C 1.47443 * 110.99841 * 69.87398 * 13 12 9 15 15 C 1.54314 * 107.23065 * 123.25629 * 14 13 12 16 16 C 1.55140 * 103.02211 * 22.28737 * 15 14 13 17 17 C 1.47845 * 110.99959 * 190.72175 * 13 12 9 18 18 H 1.09002 * 110.37227 * 332.46494 * 17 13 12 19 19 C 1.50698 * 110.37349 * 94.80793 * 17 13 12 20 20 C 1.38268 * 119.99009 * 39.72829 * 19 17 13 21 21 C 1.38219 * 120.05152 * 179.72690 * 20 19 17 22 22 C 1.38221 * 120.02456 * 0.54315 * 21 20 19 23 23 C 1.38437 * 119.97353 * 359.72712 * 22 21 20 24 24 F 1.35106 * 120.02504 * 180.02562 * 23 22 21 25 25 C 1.38179 * 119.98544 * 219.99575 * 19 17 13 26 26 H 0.96999 * 120.00073 * 0.02562 * 1 2 3 27 27 H 0.96700 * 114.00234 * 59.99791 * 11 9 7 28 28 H 1.08992 * 109.47399 * 299.99938 * 12 9 7 29 29 H 1.09004 * 109.46724 * 60.00424 * 12 9 7 30 30 H 1.08994 * 109.89405 * 242.66485 * 14 13 12 31 31 H 1.08999 * 109.89031 * 3.85461 * 14 13 12 32 32 H 1.09000 * 110.70546 * 140.66428 * 15 14 13 33 33 H 1.08997 * 110.71323 * 263.72843 * 15 14 13 34 34 H 1.09005 * 110.99655 * 82.43191 * 16 15 14 35 35 H 1.08996 * 110.99620 * 206.21834 * 16 15 14 36 36 H 1.08002 * 119.96975 * 359.97438 * 20 19 17 37 37 H 1.08004 * 119.98670 * 180.26910 * 21 20 19 38 38 H 1.08001 * 120.01164 * 179.70966 * 22 21 20 39 39 H 1.08007 * 120.01207 * 0.02699 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 8 0.4299 -2.5751 -1.1665 12 6 2.2453 -3.6620 0.0005 13 7 1.5108 -4.9343 0.0012 14 6 0.8360 -5.1554 -1.2910 15 6 1.3380 -6.5059 -1.8436 16 6 1.8349 -7.2414 -0.5712 17 6 2.4205 -6.0711 0.2580 18 1 3.4292 -5.8339 -0.0803 19 6 2.4256 -6.4181 1.7244 20 6 1.2462 -6.3889 2.4457 21 6 1.2485 -6.7123 3.7895 22 6 2.4318 -7.0545 4.4165 23 6 3.6141 -7.0787 3.6967 24 9 4.7713 -7.4135 4.3084 25 6 3.6097 -6.7599 2.3491 26 1 -0.4850 0.8400 -0.0004 27 1 0.9223 -2.5299 -1.9976 28 1 2.8720 -3.6044 -0.8894 29 1 2.8719 -3.6043 0.8906 30 1 -0.2433 -5.1930 -1.1441 31 1 1.0904 -4.3536 -1.9842 32 1 0.5233 -7.0568 -2.3136 33 1 2.1556 -6.3542 -2.5483 34 1 1.0061 -7.7158 -0.0456 35 1 2.6067 -7.9704 -0.8178 36 1 0.3219 -6.1170 1.9576 37 1 0.3260 -6.6934 4.3508 38 1 2.4341 -7.3027 5.4676 39 1 4.5316 -6.7780 1.7867 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809572444.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:44 Heat of formation + Delta-G solvation = -67.203223 kcal Electronic energy + Delta-G solvation = -21921.694898 eV Core-core repulsion = 18550.390622 eV Total energy + Delta-G solvation = -3371.304276 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.81115 -39.71713 -37.95728 -35.53995 -32.18287 -31.76418 -31.50401 -30.33921 -27.82242 -27.53940 -24.47753 -22.74091 -22.60148 -21.22024 -20.31055 -19.80141 -17.29992 -16.90150 -16.30170 -15.97228 -15.51594 -15.40694 -14.96671 -14.61729 -14.36296 -13.99136 -13.65354 -13.36560 -13.23325 -12.82982 -12.58837 -12.45931 -12.15798 -11.75662 -11.59042 -11.38332 -11.21353 -10.94494 -10.86673 -10.81176 -10.70785 -10.59517 -10.24330 -10.01688 -9.00350 -8.85245 -8.56425 -8.50061 -8.05610 -7.75906 -6.00011 -4.18357 1.29317 1.32841 3.28807 3.34279 3.36051 3.68887 4.18228 4.37655 4.54178 4.74709 4.88350 4.95018 5.02941 5.18320 5.25171 5.27003 5.42133 5.49936 5.54784 5.70903 5.90577 5.91434 5.95320 6.04545 6.16275 6.17977 6.21775 6.28298 6.32615 6.47337 6.55788 6.63615 6.72575 6.88403 7.02994 7.49899 7.58639 7.76855 7.94868 8.21210 8.84872 9.37697 9.58533 11.03981 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016519 B = 0.005001 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.579661 B = 5597.828189 C = 6573.714680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.081 3.919 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.574 4.574 8 H 0.053 0.947 9 C 0.239 3.761 10 H 0.062 0.938 11 O -0.558 6.558 12 C 0.029 3.971 13 N -0.516 5.516 14 C 0.055 3.945 15 C -0.147 4.147 16 C -0.117 4.117 17 C 0.103 3.897 18 H 0.059 0.941 19 C -0.033 4.033 20 C -0.092 4.092 21 C -0.097 4.097 22 C -0.161 4.161 23 C 0.089 3.911 24 F -0.146 7.146 25 C -0.153 4.153 26 H 0.261 0.739 27 H 0.338 0.662 28 H 0.023 0.977 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.139 0.861 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.563 -15.651 1.880 16.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.125 4.125 3 Si 0.715 3.285 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.613 4.613 8 H 0.071 0.929 9 C 0.181 3.819 10 H 0.080 0.920 11 O -0.361 6.361 12 C -0.099 4.099 13 N -0.240 5.240 14 C -0.073 4.073 15 C -0.186 4.186 16 C -0.155 4.155 17 C -0.006 4.006 18 H 0.077 0.923 19 C -0.034 4.034 20 C -0.110 4.110 21 C -0.115 4.115 22 C -0.180 4.180 23 C 0.070 3.930 24 F -0.125 7.125 25 C -0.173 4.173 26 H 0.070 0.930 27 H 0.182 0.818 28 H 0.042 0.958 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.157 0.843 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.580 -15.544 2.753 15.996 hybrid contribution 1.970 1.043 -0.749 2.352 sum 4.550 -14.501 2.004 15.329 Atomic orbital electron populations 1.70068 1.05873 1.26482 1.46890 1.25004 0.94666 0.98994 0.93832 0.86758 0.79749 0.83312 0.78663 1.20229 1.21175 1.20174 1.21599 0.93058 0.91643 1.54973 0.92897 1.19321 0.87987 0.88420 0.86184 0.91986 1.86653 1.38491 1.95906 1.15080 1.23173 0.97143 0.90183 0.99420 1.63424 1.27682 1.01185 1.31694 1.22874 0.99732 0.94879 0.89777 1.22918 1.00776 0.97731 0.97153 1.22709 1.00523 0.96473 0.95792 1.21472 0.96341 0.92151 0.90590 0.92304 1.19613 0.92168 0.96100 0.95507 1.21168 0.99124 0.97231 0.93462 1.21058 0.97362 0.98061 0.94997 1.21079 0.91821 1.04557 1.00504 1.17605 0.81667 1.02396 0.91352 1.91470 1.47512 1.90230 1.83292 1.20971 0.99322 1.03863 0.93111 0.92957 0.81766 0.95832 0.91696 0.90574 0.91252 0.91108 0.91968 0.90577 0.91327 0.84340 0.85206 0.85302 0.85326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.19 12.84 55.43 0.71 -24.48 16 2 C 0.08 2.27 5.40 -17.82 -0.10 2.17 16 3 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.57 -15.62 8.76 -34.44 -0.30 -15.92 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 9 C 0.24 5.92 3.08 -27.88 -0.09 5.83 16 10 H 0.06 1.75 8.14 -51.93 -0.42 1.33 16 11 O -0.56 -13.63 10.34 -35.23 -0.36 -13.99 16 12 C 0.03 0.58 4.40 -3.82 -0.02 0.56 16 13 N -0.52 -8.84 4.10 -224.75 -0.92 -9.77 16 14 C 0.05 0.87 5.51 -2.84 -0.02 0.85 16 15 C -0.15 -1.81 6.94 -24.91 -0.17 -1.98 16 16 C -0.12 -1.40 6.47 -24.59 -0.16 -1.56 16 17 C 0.10 1.48 2.58 -67.34 -0.17 1.30 16 18 H 0.06 0.85 7.70 -51.93 -0.40 0.45 16 19 C -0.03 -0.47 5.03 -104.63 -0.53 -1.00 16 20 C -0.09 -1.28 9.18 -39.58 -0.36 -1.64 16 21 C -0.10 -1.19 10.04 -39.59 -0.40 -1.59 16 22 C -0.16 -1.98 10.03 -39.51 -0.40 -2.38 16 23 C 0.09 1.21 7.30 -39.42 -0.29 0.92 16 24 F -0.15 -2.03 17.27 2.25 0.04 -1.99 16 25 C -0.15 -2.09 9.66 -39.52 -0.38 -2.47 16 26 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.34 7.41 7.92 45.56 0.36 7.78 16 28 H 0.02 0.47 7.96 -51.93 -0.41 0.05 16 29 H 0.06 1.35 8.07 -51.93 -0.42 0.93 16 30 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.07 1.17 5.20 -51.93 -0.27 0.90 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.90 7.92 -51.93 -0.41 0.49 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.14 2.00 7.74 -52.49 -0.41 1.60 16 37 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 38 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.13 1.57 8.04 -52.48 -0.42 1.15 16 LS Contribution 323.23 15.07 4.87 4.87 Total: -1.00 -29.59 323.23 -8.94 -38.53 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -4.88 Total: 7.61 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -3.38 Total: -16.90 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: -0.21 Total: -34.24 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.36 Total: -13.99 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.59 -8.94 -38.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809572444.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.674 kcal (2) G-P(sol) polarization free energy of solvation -29.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds