Wall clock time and date at job start Wed Apr 15 2020 11:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00129 * 2 1 4 4 H 1.48496 * 109.47319 * 239.99985 * 3 2 1 5 5 H 1.48503 * 109.46734 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47266 * 119.99799 * 3 2 1 7 7 C 1.37878 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00306 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46959 * 299.99551 * 9 7 2 11 11 O 1.42903 * 109.47184 * 59.99808 * 9 7 2 12 12 C 1.53000 * 109.47083 * 179.97438 * 9 7 2 13 13 N 1.46905 * 109.47123 * 179.97438 * 12 9 7 14 14 C 1.47443 * 110.99841 * 69.87398 * 13 12 9 15 15 C 1.54314 * 107.23065 * 123.25629 * 14 13 12 16 16 C 1.55140 * 103.02211 * 22.28737 * 15 14 13 17 17 C 1.47845 * 110.99959 * 190.72175 * 13 12 9 18 18 H 1.09002 * 110.37227 * 332.46494 * 17 13 12 19 19 C 1.50698 * 110.37349 * 94.80793 * 17 13 12 20 20 C 1.38268 * 119.99009 * 39.72829 * 19 17 13 21 21 C 1.38219 * 120.05152 * 179.72690 * 20 19 17 22 22 C 1.38221 * 120.02456 * 0.54315 * 21 20 19 23 23 C 1.38437 * 119.97353 * 359.72712 * 22 21 20 24 24 F 1.35106 * 120.02504 * 180.02562 * 23 22 21 25 25 C 1.38179 * 119.98544 * 219.99575 * 19 17 13 26 26 H 0.96999 * 120.00073 * 0.02562 * 1 2 3 27 27 H 0.96700 * 114.00234 * 59.99791 * 11 9 7 28 28 H 1.08992 * 109.47399 * 299.99938 * 12 9 7 29 29 H 1.09004 * 109.46724 * 60.00424 * 12 9 7 30 30 H 1.08994 * 109.89405 * 242.66485 * 14 13 12 31 31 H 1.08999 * 109.89031 * 3.85461 * 14 13 12 32 32 H 1.09000 * 110.70546 * 140.66428 * 15 14 13 33 33 H 1.08997 * 110.71323 * 263.72843 * 15 14 13 34 34 H 1.09005 * 110.99655 * 82.43191 * 16 15 14 35 35 H 1.08996 * 110.99620 * 206.21834 * 16 15 14 36 36 H 1.08002 * 119.96975 * 359.97438 * 20 19 17 37 37 H 1.08004 * 119.98670 * 180.26910 * 21 20 19 38 38 H 1.08001 * 120.01164 * 179.70966 * 22 21 20 39 39 H 1.08007 * 120.01207 * 0.02699 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 8 0.4299 -2.5751 -1.1665 12 6 2.2453 -3.6620 0.0005 13 7 1.5108 -4.9343 0.0012 14 6 0.8360 -5.1554 -1.2910 15 6 1.3380 -6.5059 -1.8436 16 6 1.8349 -7.2414 -0.5712 17 6 2.4205 -6.0711 0.2580 18 1 3.4292 -5.8339 -0.0803 19 6 2.4256 -6.4181 1.7244 20 6 1.2462 -6.3889 2.4457 21 6 1.2485 -6.7123 3.7895 22 6 2.4318 -7.0545 4.4165 23 6 3.6141 -7.0787 3.6967 24 9 4.7713 -7.4135 4.3084 25 6 3.6097 -6.7599 2.3491 26 1 -0.4850 0.8400 -0.0004 27 1 0.9223 -2.5299 -1.9976 28 1 2.8720 -3.6044 -0.8894 29 1 2.8719 -3.6043 0.8906 30 1 -0.2433 -5.1930 -1.1441 31 1 1.0904 -4.3536 -1.9842 32 1 0.5233 -7.0568 -2.3136 33 1 2.1556 -6.3542 -2.5483 34 1 1.0061 -7.7158 -0.0456 35 1 2.6067 -7.9704 -0.8178 36 1 0.3219 -6.1170 1.9576 37 1 0.3260 -6.6934 4.3508 38 1 2.4341 -7.3027 5.4676 39 1 4.5316 -6.7780 1.7867 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809572444.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:42 Heat of formation + Delta-G solvation = -85.411515 kcal Electronic energy + Delta-G solvation = -21922.484468 eV Core-core repulsion = 18550.390622 eV Total energy + Delta-G solvation = -3372.093846 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -49.86726 -40.88201 -39.17989 -37.32059 -34.26738 -32.98122 -32.82326 -31.37497 -29.58816 -28.68166 -26.30117 -23.87105 -23.65458 -22.77405 -21.61749 -21.07722 -19.02551 -18.20893 -17.47896 -17.01197 -16.66989 -16.60283 -16.54466 -16.31299 -16.19242 -15.44484 -14.91306 -14.74263 -14.45629 -14.09583 -13.96104 -13.65910 -13.40247 -13.19723 -13.12513 -12.83366 -12.74818 -12.59875 -12.41087 -12.24623 -11.97312 -11.79777 -11.69781 -11.46524 -11.00106 -10.69620 -10.03804 -9.83931 -9.53095 -9.13975 -8.12570 -6.38458 0.26203 0.29659 1.40122 1.41457 1.49560 2.38183 2.64443 3.04478 3.13287 3.39689 3.67402 3.84320 3.92013 3.99934 4.12788 4.21494 4.28264 4.35640 4.43724 4.50410 4.50752 4.58919 4.73475 4.92085 4.96822 5.03220 5.05061 5.11995 5.18594 5.19124 5.26497 5.41119 5.47968 5.62986 5.64026 5.76228 6.00361 6.03501 6.28336 6.30502 6.74683 7.34259 7.56263 8.91351 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016519 B = 0.005001 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.579661 B = 5597.828189 C = 6573.714680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.029 3.971 3 Si 0.956 3.044 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.589 4.589 8 H 0.055 0.945 9 C 0.243 3.757 10 H 0.018 0.982 11 O -0.567 6.567 12 C 0.050 3.950 13 N -0.527 5.527 14 C 0.053 3.947 15 C -0.136 4.136 16 C -0.108 4.108 17 C 0.102 3.898 18 H 0.060 0.940 19 C -0.045 4.045 20 C -0.106 4.106 21 C -0.095 4.095 22 C -0.158 4.158 23 C 0.076 3.924 24 F -0.149 7.149 25 C -0.159 4.159 26 H 0.261 0.739 27 H 0.350 0.650 28 H 0.028 0.972 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.127 0.873 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.659 -16.605 1.794 17.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.173 4.173 3 Si 0.781 3.219 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.628 4.628 8 H 0.074 0.926 9 C 0.185 3.815 10 H 0.036 0.964 11 O -0.371 6.371 12 C -0.078 4.078 13 N -0.251 5.251 14 C -0.075 4.075 15 C -0.174 4.174 16 C -0.146 4.146 17 C -0.006 4.006 18 H 0.078 0.922 19 C -0.046 4.046 20 C -0.124 4.124 21 C -0.113 4.113 22 C -0.177 4.177 23 C 0.057 3.943 24 F -0.128 7.128 25 C -0.178 4.178 26 H 0.070 0.930 27 H 0.195 0.805 28 H 0.047 0.953 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.111 0.889 36 H 0.145 0.855 37 H 0.172 0.828 38 H 0.170 0.830 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.691 -16.516 2.660 17.131 hybrid contribution 1.588 1.298 -0.689 2.164 sum 5.280 -15.218 1.971 16.228 Atomic orbital electron populations 1.70207 1.07552 1.27351 1.48266 1.25840 0.95438 1.02682 0.93379 0.85670 0.78431 0.78782 0.79019 1.19154 1.20918 1.19633 1.22006 0.93380 0.92946 1.54427 0.92635 1.19051 0.87753 0.89845 0.84816 0.96381 1.86592 1.38946 1.96038 1.15542 1.22694 0.95676 0.90332 0.99094 1.63289 1.28210 1.00889 1.32736 1.22805 0.98799 0.96798 0.89071 1.22846 1.01642 0.95499 0.97413 1.22701 1.01135 0.95864 0.94889 1.21539 0.95855 0.91851 0.91334 0.92200 1.19644 0.92528 0.96876 0.95530 1.21215 0.98731 0.98050 0.94443 1.21320 0.98476 0.97033 0.94437 1.21366 0.91202 1.03497 1.01622 1.17804 0.82027 1.02855 0.91590 1.91461 1.47733 1.90310 1.83302 1.21086 0.99523 1.03795 0.93399 0.93004 0.80528 0.95341 0.92632 0.92193 0.92615 0.89255 0.90912 0.90392 0.88917 0.85459 0.82825 0.82964 0.84264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.71 12.84 21.45 0.28 -53.44 16 2 C 0.03 1.64 5.40 84.65 0.46 2.10 16 3 Si 0.96 43.45 29.54 68.60 2.03 45.47 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.59 -32.47 8.76 25.60 0.22 -32.24 16 8 H 0.06 2.96 7.74 -2.91 -0.02 2.94 16 9 C 0.24 12.43 3.08 29.85 0.09 12.52 16 10 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 11 O -0.57 -28.43 10.34 -148.98 -1.54 -29.97 16 12 C 0.05 2.07 4.40 86.30 0.38 2.45 16 13 N -0.53 -18.13 4.10 -864.98 -3.54 -21.68 16 14 C 0.05 1.65 5.51 86.64 0.48 2.13 16 15 C -0.14 -3.04 6.94 31.77 0.22 -2.82 16 16 C -0.11 -2.34 6.47 31.98 0.21 -2.13 16 17 C 0.10 2.82 2.58 44.64 0.12 2.94 16 18 H 0.06 1.65 7.70 -2.39 -0.02 1.63 16 19 C -0.04 -1.24 5.03 -19.87 -0.10 -1.34 16 20 C -0.11 -2.90 9.18 22.27 0.20 -2.70 16 21 C -0.09 -2.19 10.04 22.26 0.22 -1.97 16 22 C -0.16 -3.61 10.03 22.31 0.22 -3.39 16 23 C 0.08 1.97 7.30 22.37 0.16 2.13 16 24 F -0.15 -3.93 17.27 44.97 0.78 -3.16 16 25 C -0.16 -4.14 9.66 22.31 0.22 -3.93 16 26 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 27 H 0.35 15.60 7.92 -74.06 -0.59 15.01 16 28 H 0.03 1.12 7.96 -2.39 -0.02 1.11 16 29 H 0.06 2.35 8.07 -2.39 -0.02 2.33 16 30 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.06 1.89 5.20 -2.39 -0.01 1.87 16 32 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.08 1.68 7.92 -2.38 -0.02 1.66 16 35 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.13 3.73 7.74 -2.91 -0.02 3.71 16 37 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 38 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 39 H 0.14 3.22 8.04 -2.91 -0.02 3.19 16 Total: -1.00 -64.01 323.23 1.56 -62.45 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: 0.46 Total: 26.56 kcal Atomic # 6 Polarization: -29.35 SS G_CDS: 3.10 Total: -26.24 kcal Atomic # 7 Polarization: -71.85 SS G_CDS: -3.27 Total: -75.12 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -1.54 Total: -29.97 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.78 Total: -3.16 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -64.01 1.56 -62.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809572444.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.957 kcal (2) G-P(sol) polarization free energy of solvation -64.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds