Wall clock time and date at job start Wed Apr 15 2020 11:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00100 * 2 1 4 4 H 1.48504 * 109.46789 * 239.99950 * 3 2 1 5 5 H 1.48501 * 109.47133 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47733 * 119.99531 * 3 2 1 7 7 C 1.38808 * 120.00176 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00509 * 201.58723 * 7 2 1 9 9 N 1.36945 * 119.99833 * 21.58537 * 7 2 1 10 10 C 1.46500 * 119.99666 * 36.74357 * 9 7 2 11 11 C 1.50702 * 109.46887 * 90.00310 * 10 9 7 12 12 C 1.38269 * 119.93653 * 270.01929 * 11 10 9 13 13 C 1.38175 * 120.09233 * 179.71872 * 12 11 10 14 14 C 1.38658 * 119.97381 * 0.53604 * 13 12 11 15 15 O 1.35955 * 120.06548 * 179.74090 * 14 13 12 16 16 C 1.38910 * 119.87034 * 359.46616 * 14 13 12 17 17 F 1.35103 * 120.04737 * 180.27633 * 16 14 13 18 18 C 1.38255 * 119.94089 * 89.99669 * 11 10 9 19 19 C 1.46500 * 119.99852 * 216.74888 * 9 7 2 20 20 C 1.54266 * 110.03461 * 62.53410 * 19 9 7 21 21 C 1.54960 * 104.15566 * 217.13511 * 20 19 9 22 22 C 1.54883 * 102.78248 * 37.88832 * 21 20 19 23 23 C 1.53870 * 110.03102 * 305.30991 * 19 9 7 24 24 H 0.97010 * 120.00110 * 354.91848 * 1 2 3 25 25 H 1.08998 * 109.47364 * 330.00506 * 10 9 7 26 26 H 1.09000 * 109.47069 * 209.99938 * 10 9 7 27 27 H 1.07994 * 119.95014 * 359.97438 * 12 11 10 28 28 H 1.08005 * 120.01508 * 180.25356 * 13 12 11 29 29 H 0.96704 * 114.00501 * 269.71921 * 15 14 13 30 30 H 1.08006 * 119.97898 * 0.02562 * 18 11 10 31 31 H 1.09003 * 110.01027 * 183.92542 * 19 9 7 32 32 H 1.08995 * 110.48466 * 335.78010 * 20 19 9 33 33 H 1.08994 * 110.48502 * 98.42330 * 20 19 9 34 34 H 1.09005 * 110.72332 * 279.57115 * 21 20 19 35 35 H 1.09009 * 110.92274 * 156.29436 * 21 20 19 36 36 H 1.09000 * 110.48872 * 203.40425 * 22 21 20 37 37 H 1.08995 * 110.60246 * 80.81328 * 22 21 20 38 38 H 1.08998 * 110.03367 * 238.56834 * 23 19 9 39 39 H 1.09001 * 110.03625 * 359.96145 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0334 -1.2348 0.3446 9 7 1.3975 -2.3467 -0.4353 10 6 0.4621 -2.2934 -1.5614 11 6 1.2144 -2.5061 -2.8498 12 6 1.7365 -1.4221 -3.5310 13 6 2.4319 -1.6139 -4.7095 14 6 2.5969 -2.8941 -5.2160 15 8 3.2762 -3.0845 -6.3782 16 6 2.0718 -3.9822 -4.5306 17 9 2.2353 -5.2317 -5.0179 18 6 1.3816 -3.7848 -3.3482 19 6 1.6775 -3.6242 0.2248 20 6 1.2264 -3.5675 1.6989 21 6 2.3075 -4.3780 2.4576 22 6 3.6112 -3.9849 1.7195 23 6 3.1931 -3.8899 0.2376 24 1 -0.4851 0.8368 0.0744 25 1 -0.0263 -1.3192 -1.5825 26 1 -0.2897 -3.0743 -1.4465 27 1 1.6042 -0.4245 -3.1391 28 1 2.8427 -0.7666 -5.2384 29 1 2.7187 -3.0614 -7.1680 30 1 0.9727 -4.6299 -2.8143 31 1 1.1611 -4.4326 -0.2929 32 1 1.2050 -2.5365 2.0519 33 1 0.2475 -4.0323 1.8164 34 1 2.1208 -5.4482 2.3683 35 1 2.3525 -4.0813 3.5056 36 1 4.3718 -4.7542 1.8527 37 1 3.9777 -3.0219 2.0749 38 1 3.4121 -4.8276 -0.2730 39 1 3.7203 -3.0686 -0.2479 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813335434.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:47 Heat of formation + Delta-G solvation = -54.355685 kcal Electronic energy + Delta-G solvation = -22381.630140 eV Core-core repulsion = 19010.882975 eV Total energy + Delta-G solvation = -3370.747165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.50983 -39.16047 -37.80637 -36.56034 -34.20699 -31.38372 -30.19536 -29.64988 -27.87107 -26.66835 -25.48285 -22.82095 -22.33966 -20.81478 -19.92147 -19.12422 -18.28707 -16.81380 -16.24886 -15.99067 -15.61325 -15.34678 -14.77253 -14.72908 -14.24114 -13.73708 -13.58699 -13.49655 -13.08523 -12.92601 -12.55382 -11.91709 -11.69466 -11.53868 -11.22833 -10.99076 -10.86559 -10.56457 -10.46723 -10.35087 -10.29441 -10.24476 -10.10578 -9.96061 -9.87321 -9.54705 -8.57761 -8.46707 -7.98049 -6.63368 -5.91497 -3.42067 1.55020 1.63953 3.29727 3.36509 3.39548 3.94714 4.31523 4.40726 4.68823 5.16202 5.20994 5.34810 5.43086 5.44041 5.59641 5.72574 5.74983 5.83842 6.11184 6.17896 6.27396 6.28916 6.35782 6.41837 6.50318 6.52374 6.57860 6.61066 6.63799 6.76964 6.83620 6.96411 7.13797 7.21976 7.23088 7.33695 7.54177 7.79187 7.82263 8.44842 9.08667 9.71511 10.29230 11.11324 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.013642 B = 0.007360 C = 0.005463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.958369 B = 3803.541844 C = 5124.159899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.015 3.985 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.248 4.248 8 H 0.063 0.937 9 N -0.567 5.567 10 C 0.171 3.829 11 C -0.048 4.048 12 C -0.094 4.094 13 C -0.120 4.120 14 C 0.042 3.958 15 O -0.493 6.493 16 C 0.065 3.935 17 F -0.145 7.145 18 C -0.142 4.142 19 C 0.172 3.828 20 C -0.129 4.129 21 C -0.124 4.124 22 C -0.117 4.117 23 C -0.134 4.134 24 H 0.258 0.742 25 H 0.111 0.889 26 H 0.037 0.963 27 H 0.132 0.868 28 H 0.128 0.872 29 H 0.381 0.619 30 H 0.128 0.872 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.045 0.955 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.047 0.953 37 H 0.062 0.938 38 H 0.043 0.957 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.417 -5.436 -5.228 7.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.186 4.186 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.378 4.378 8 H 0.080 0.920 9 N -0.284 5.284 10 C 0.045 3.955 11 C -0.051 4.051 12 C -0.113 4.113 13 C -0.139 4.139 14 C -0.003 4.003 15 O -0.301 6.301 16 C 0.045 3.955 17 F -0.124 7.124 18 C -0.162 4.162 19 C 0.065 3.935 20 C -0.169 4.169 21 C -0.162 4.162 22 C -0.155 4.155 23 C -0.173 4.173 24 H 0.068 0.932 25 H 0.128 0.872 26 H 0.055 0.945 27 H 0.150 0.850 28 H 0.146 0.854 29 H 0.235 0.765 30 H 0.146 0.854 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.766 -5.370 -4.885 7.472 hybrid contribution 0.266 0.653 -0.444 0.833 sum 2.032 -4.717 -5.329 7.401 Atomic orbital electron populations 1.69865 1.05469 1.26238 1.51272 1.25137 0.94985 0.98471 0.99968 0.86548 0.79342 0.83497 0.78579 1.20694 1.21584 1.20693 1.18903 0.94696 0.85037 1.39178 0.91955 1.43879 1.51565 1.03112 1.29879 1.20151 0.90223 1.03851 0.81289 1.21291 0.96507 0.90803 0.96536 1.21106 0.96661 1.00162 0.93363 1.21277 0.99437 0.95259 0.97916 1.18280 1.00306 0.91680 0.90060 1.84888 1.36207 1.94611 1.14432 1.18118 1.02157 0.78904 0.96285 1.91429 1.94136 1.38982 1.87846 1.21003 1.01513 0.98841 0.94854 1.21069 0.92609 0.88058 0.91802 1.22803 0.96067 1.01153 0.96845 1.22445 0.96352 0.98921 0.98450 1.22243 0.96620 1.00269 0.96350 1.22559 0.98930 1.00352 0.95474 0.93197 0.87207 0.94454 0.85023 0.85422 0.76515 0.85411 0.93422 0.89662 0.93598 0.92874 0.92831 0.93422 0.91960 0.93786 0.90933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.17 11.42 55.49 0.63 -22.53 16 2 C 0.01 0.37 4.96 -17.43 -0.09 0.28 16 3 Si 0.89 20.19 29.61 -169.99 -5.03 15.15 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.25 -6.11 7.80 -15.06 -0.12 -6.23 16 8 H 0.06 1.58 6.93 -52.49 -0.36 1.22 16 9 N -0.57 -12.68 2.37 -165.75 -0.39 -13.07 16 10 C 0.17 3.64 5.38 -5.19 -0.03 3.61 16 11 C -0.05 -0.91 5.46 -104.60 -0.57 -1.48 16 12 C -0.09 -1.74 9.69 -39.59 -0.38 -2.12 16 13 C -0.12 -1.99 9.98 -39.45 -0.39 -2.38 16 14 C 0.04 0.71 6.71 -39.18 -0.26 0.44 16 15 O -0.49 -7.27 13.37 -19.60 -0.26 -7.53 16 16 C 0.07 1.14 7.31 -39.30 -0.29 0.85 16 17 F -0.15 -2.53 17.11 2.25 0.04 -2.49 16 18 C -0.14 -2.53 9.67 -39.54 -0.38 -2.91 16 19 C 0.17 3.41 3.41 -66.81 -0.23 3.18 16 20 C -0.13 -2.48 6.43 -25.03 -0.16 -2.64 16 21 C -0.12 -2.00 6.91 -24.70 -0.17 -2.17 16 22 C -0.12 -1.95 6.83 -25.07 -0.17 -2.12 16 23 C -0.13 -2.48 6.14 -25.61 -0.16 -2.64 16 24 H 0.26 6.61 8.32 -40.82 -0.34 6.27 16 25 H 0.11 2.62 5.40 -51.93 -0.28 2.34 16 26 H 0.04 0.76 7.91 -51.93 -0.41 0.35 16 27 H 0.13 2.56 8.06 -52.49 -0.42 2.13 16 28 H 0.13 1.83 8.06 -52.48 -0.42 1.40 16 29 H 0.38 3.62 9.06 45.56 0.41 4.04 16 30 H 0.13 2.12 8.06 -52.48 -0.42 1.70 16 31 H 0.05 0.90 7.86 -51.93 -0.41 0.50 16 32 H 0.08 1.92 7.22 -51.93 -0.38 1.54 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 1.51 6.70 -51.93 -0.35 1.16 16 LS Contribution 324.33 15.07 4.89 4.89 Total: -1.00 -26.80 324.33 -8.24 -35.05 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -4.71 Total: 6.87 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -3.40 Total: -16.34 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.24 Total: -35.60 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -0.26 Total: -7.53 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.04 Total: -2.49 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.03 Total: 15.15 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -26.80 -8.24 -35.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813335434.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.306 kcal (2) G-P(sol) polarization free energy of solvation -26.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds