Wall clock time and date at job start Wed Apr 15 2020 11:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00100 * 2 1 4 4 H 1.48504 * 109.46789 * 239.99950 * 3 2 1 5 5 H 1.48501 * 109.47133 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47733 * 119.99531 * 3 2 1 7 7 C 1.38808 * 120.00176 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00509 * 201.58723 * 7 2 1 9 9 N 1.36945 * 119.99833 * 21.58537 * 7 2 1 10 10 C 1.46500 * 119.99666 * 36.74357 * 9 7 2 11 11 C 1.50702 * 109.46887 * 90.00310 * 10 9 7 12 12 C 1.38269 * 119.93653 * 270.01929 * 11 10 9 13 13 C 1.38175 * 120.09233 * 179.71872 * 12 11 10 14 14 C 1.38658 * 119.97381 * 0.53604 * 13 12 11 15 15 O 1.35955 * 120.06548 * 179.74090 * 14 13 12 16 16 C 1.38910 * 119.87034 * 359.46616 * 14 13 12 17 17 F 1.35103 * 120.04737 * 180.27633 * 16 14 13 18 18 C 1.38255 * 119.94089 * 89.99669 * 11 10 9 19 19 C 1.46500 * 119.99852 * 216.74888 * 9 7 2 20 20 C 1.54266 * 110.03461 * 62.53410 * 19 9 7 21 21 C 1.54960 * 104.15566 * 217.13511 * 20 19 9 22 22 C 1.54883 * 102.78248 * 37.88832 * 21 20 19 23 23 C 1.53870 * 110.03102 * 305.30991 * 19 9 7 24 24 H 0.97010 * 120.00110 * 354.91848 * 1 2 3 25 25 H 1.08998 * 109.47364 * 330.00506 * 10 9 7 26 26 H 1.09000 * 109.47069 * 209.99938 * 10 9 7 27 27 H 1.07994 * 119.95014 * 359.97438 * 12 11 10 28 28 H 1.08005 * 120.01508 * 180.25356 * 13 12 11 29 29 H 0.96704 * 114.00501 * 269.71921 * 15 14 13 30 30 H 1.08006 * 119.97898 * 0.02562 * 18 11 10 31 31 H 1.09003 * 110.01027 * 183.92542 * 19 9 7 32 32 H 1.08995 * 110.48466 * 335.78010 * 20 19 9 33 33 H 1.08994 * 110.48502 * 98.42330 * 20 19 9 34 34 H 1.09005 * 110.72332 * 279.57115 * 21 20 19 35 35 H 1.09009 * 110.92274 * 156.29436 * 21 20 19 36 36 H 1.09000 * 110.48872 * 203.40425 * 22 21 20 37 37 H 1.08995 * 110.60246 * 80.81328 * 22 21 20 38 38 H 1.08998 * 110.03367 * 238.56834 * 23 19 9 39 39 H 1.09001 * 110.03625 * 359.96145 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0334 -1.2348 0.3446 9 7 1.3975 -2.3467 -0.4353 10 6 0.4621 -2.2934 -1.5614 11 6 1.2144 -2.5061 -2.8498 12 6 1.7365 -1.4221 -3.5310 13 6 2.4319 -1.6139 -4.7095 14 6 2.5969 -2.8941 -5.2160 15 8 3.2762 -3.0845 -6.3782 16 6 2.0718 -3.9822 -4.5306 17 9 2.2353 -5.2317 -5.0179 18 6 1.3816 -3.7848 -3.3482 19 6 1.6775 -3.6242 0.2248 20 6 1.2264 -3.5675 1.6989 21 6 2.3075 -4.3780 2.4576 22 6 3.6112 -3.9849 1.7195 23 6 3.1931 -3.8899 0.2376 24 1 -0.4851 0.8368 0.0744 25 1 -0.0263 -1.3192 -1.5825 26 1 -0.2897 -3.0743 -1.4465 27 1 1.6042 -0.4245 -3.1391 28 1 2.8427 -0.7666 -5.2384 29 1 2.7187 -3.0614 -7.1680 30 1 0.9727 -4.6299 -2.8143 31 1 1.1611 -4.4326 -0.2929 32 1 1.2050 -2.5365 2.0519 33 1 0.2475 -4.0323 1.8164 34 1 2.1208 -5.4482 2.3683 35 1 2.3525 -4.0813 3.5056 36 1 4.3718 -4.7542 1.8527 37 1 3.9777 -3.0219 2.0749 38 1 3.4121 -4.8276 -0.2730 39 1 3.7203 -3.0686 -0.2479 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813335434.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:46 Heat of formation + Delta-G solvation = -68.086437 kcal Electronic energy + Delta-G solvation = -22382.225550 eV Core-core repulsion = 19010.882975 eV Total energy + Delta-G solvation = -3371.342575 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -49.87632 -40.54328 -39.30788 -37.87768 -35.84350 -33.15424 -31.62292 -31.11595 -29.34162 -28.23168 -27.17848 -24.40117 -23.77964 -22.30579 -21.30714 -20.76276 -19.54399 -18.42290 -17.73382 -17.49646 -16.96149 -16.94727 -16.35994 -16.09908 -15.91172 -15.19719 -15.10381 -14.87012 -14.58204 -14.43124 -14.04299 -13.37958 -13.25498 -13.08194 -12.90091 -12.68249 -12.52693 -12.18957 -12.05192 -11.90649 -11.75791 -11.71309 -11.63522 -11.51508 -11.32147 -11.14777 -10.46141 -9.84431 -9.39084 -8.45002 -7.80711 -5.33863 0.17029 0.25681 1.46277 1.50463 1.55003 2.49079 2.60973 3.03452 3.28607 3.38491 3.74187 3.84811 3.99474 4.01794 4.14106 4.32544 4.35640 4.40621 4.69324 4.76558 4.81422 4.88987 4.96319 4.97679 4.99616 5.08287 5.15668 5.21178 5.25371 5.30655 5.33125 5.53221 5.59372 5.65980 5.72738 5.83252 5.85608 5.92945 6.56295 6.75968 7.22524 7.91831 8.44461 9.19123 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.013642 B = 0.007360 C = 0.005463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.958369 B = 3803.541844 C = 5124.159899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.023 4.023 3 Si 0.937 3.063 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.283 1.283 7 C -0.242 4.242 8 H 0.051 0.949 9 N -0.578 5.578 10 C 0.176 3.824 11 C -0.061 4.061 12 C -0.104 4.104 13 C -0.115 4.115 14 C 0.057 3.943 15 O -0.497 6.497 16 C 0.057 3.943 17 F -0.144 7.144 18 C -0.138 4.138 19 C 0.164 3.836 20 C -0.128 4.128 21 C -0.113 4.113 22 C -0.114 4.114 23 C -0.128 4.128 24 H 0.252 0.748 25 H 0.083 0.917 26 H 0.040 0.960 27 H 0.116 0.884 28 H 0.153 0.847 29 H 0.407 0.593 30 H 0.138 0.862 31 H 0.058 0.942 32 H 0.045 0.955 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.046 0.954 38 H 0.060 0.940 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.604 -6.891 -6.155 9.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.221 4.221 3 Si 0.767 3.233 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.209 1.209 7 C -0.372 4.372 8 H 0.068 0.932 9 N -0.297 5.297 10 C 0.050 3.950 11 C -0.064 4.064 12 C -0.123 4.123 13 C -0.133 4.133 14 C 0.012 3.988 15 O -0.310 6.310 16 C 0.038 3.962 17 F -0.122 7.122 18 C -0.157 4.157 19 C 0.057 3.943 20 C -0.167 4.167 21 C -0.150 4.150 22 C -0.151 4.151 23 C -0.167 4.167 24 H 0.062 0.938 25 H 0.100 0.900 26 H 0.059 0.941 27 H 0.134 0.866 28 H 0.171 0.829 29 H 0.266 0.734 30 H 0.156 0.844 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.960 -6.843 -5.845 9.474 hybrid contribution -0.087 1.026 -0.275 1.066 sum 2.873 -5.817 -6.120 8.919 Atomic orbital electron populations 1.69973 1.06353 1.26131 1.53215 1.25569 0.95441 1.00420 1.00674 0.85814 0.78222 0.80985 0.78320 1.20389 1.22022 1.20912 1.18895 0.94099 0.86025 1.38195 0.93177 1.44011 1.51384 1.03401 1.30893 1.19934 0.90315 1.02390 0.82330 1.20981 0.97339 0.91794 0.96271 1.21053 0.97540 0.99326 0.94390 1.21421 0.98657 0.96247 0.97000 1.18293 0.98749 0.91245 0.90563 1.84819 1.36867 1.94429 1.14838 1.18179 1.02480 0.79261 0.96313 1.91434 1.94143 1.38896 1.87757 1.20989 1.01308 0.98394 0.95041 1.21269 0.93768 0.87241 0.92005 1.22700 0.97612 0.99416 0.96986 1.22400 0.94440 0.99734 0.98464 1.22223 0.97602 1.00470 0.94840 1.22461 0.97424 0.99987 0.96827 0.93816 0.89974 0.94116 0.86593 0.82949 0.73407 0.84417 0.92404 0.93652 0.93200 0.90407 0.91760 0.90635 0.93522 0.92115 0.93662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.42 11.42 21.65 0.25 -49.17 16 2 C -0.02 -1.21 4.96 84.86 0.42 -0.79 16 3 Si 0.94 42.42 29.61 68.60 2.03 44.45 16 4 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.24 -12.20 7.80 84.03 0.66 -11.55 16 8 H 0.05 2.62 6.93 -2.91 -0.02 2.60 16 9 N -0.58 -26.34 2.37 -678.32 -1.61 -27.95 16 10 C 0.18 7.67 5.38 85.63 0.46 8.13 16 11 C -0.06 -2.32 5.46 -19.85 -0.11 -2.42 16 12 C -0.10 -3.83 9.69 22.26 0.22 -3.61 16 13 C -0.11 -3.57 9.98 22.36 0.22 -3.35 16 14 C 0.06 1.76 6.71 22.53 0.15 1.91 16 15 O -0.50 -12.93 13.37 -93.04 -1.24 -14.17 16 16 C 0.06 1.88 7.31 22.45 0.16 2.05 16 17 F -0.14 -4.64 17.11 44.97 0.77 -3.87 16 18 C -0.14 -4.72 9.67 22.29 0.22 -4.50 16 19 C 0.16 6.42 3.41 45.71 0.16 6.57 16 20 C -0.13 -4.86 6.43 31.69 0.20 -4.66 16 21 C -0.11 -3.39 6.91 31.91 0.22 -3.17 16 22 C -0.11 -3.57 6.83 31.67 0.22 -3.35 16 23 C -0.13 -4.59 6.14 31.32 0.19 -4.40 16 24 H 0.25 13.42 8.32 -92.70 -0.77 12.65 16 25 H 0.08 4.09 5.40 -2.39 -0.01 4.07 16 26 H 0.04 1.68 7.91 -2.39 -0.02 1.66 16 27 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 28 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 29 H 0.41 6.17 9.06 -74.05 -0.67 5.50 16 30 H 0.14 4.36 8.06 -2.91 -0.02 4.33 16 31 H 0.06 2.13 7.86 -2.39 -0.02 2.11 16 32 H 0.04 2.08 7.22 -2.39 -0.02 2.07 16 33 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 35 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 36 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.04 1.87 6.70 -2.39 -0.02 1.85 16 Total: -1.00 -57.80 324.33 3.97 -53.84 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.39 Total: 20.01 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: 3.39 Total: -23.14 kcal Atomic # 7 Polarization: -75.76 SS G_CDS: -1.36 Total: -77.13 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -1.24 Total: -14.17 kcal Atomic # 9 Polarization: -4.64 SS G_CDS: 0.77 Total: -3.87 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -57.80 3.97 -53.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813335434.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.250 kcal (2) G-P(sol) polarization free energy of solvation -57.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds