Wall clock time and date at job start Wed Apr 15 2020 11:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99663 * 2 1 4 4 H 1.48501 * 109.47499 * 269.99789 * 3 2 1 5 5 H 1.48497 * 109.47282 * 30.00252 * 3 2 1 6 6 H 1.48503 * 109.47280 * 150.00008 * 3 2 1 7 7 C 1.37876 * 120.00307 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00070 * 173.59594 * 7 2 1 9 9 C 1.50696 * 120.00151 * 353.60225 * 7 2 1 10 10 C 1.52996 * 115.55442 * 85.43735 * 9 7 2 11 11 N 1.46907 * 109.46915 * 65.04957 * 10 9 7 12 12 C 1.46898 * 111.00050 * 185.34788 * 11 10 9 13 13 C 1.53002 * 109.46925 * 179.97438 * 12 11 10 14 14 H 1.08991 * 109.47382 * 305.00182 * 13 12 11 15 15 O 1.42901 * 109.46987 * 65.00881 * 13 12 11 16 16 C 1.50702 * 109.46664 * 185.00220 * 13 12 11 17 17 C 1.38268 * 119.98576 * 100.00523 * 16 13 12 18 18 C 1.38221 * 120.05056 * 179.97438 * 17 16 13 19 19 C 1.38219 * 120.02810 * 359.97438 * 18 17 16 20 20 C 1.38437 * 119.97233 * 0.02562 * 19 18 17 21 21 F 1.35102 * 120.02531 * 180.02562 * 20 19 18 22 22 C 1.38179 * 119.98814 * 279.72708 * 16 13 12 23 23 C 1.53007 * 117.49769 * 231.11437 * 9 7 2 24 24 C 1.53003 * 117.49755 * 299.77256 * 9 7 2 25 25 H 0.97000 * 120.00145 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47114 * 305.05258 * 10 9 7 27 27 H 1.08998 * 109.47613 * 185.04910 * 10 9 7 28 28 H 1.00898 * 110.99507 * 61.39647 * 11 10 9 29 29 H 1.09002 * 109.46557 * 60.00707 * 12 11 10 30 30 H 1.08993 * 109.47454 * 300.00496 * 12 11 10 31 31 H 0.96696 * 114.00113 * 59.99014 * 15 13 12 32 32 H 1.08001 * 119.97634 * 359.97438 * 17 16 13 33 33 H 1.08007 * 119.98581 * 180.02562 * 18 17 16 34 34 H 1.08004 * 120.01472 * 180.02562 * 19 18 17 35 35 H 1.07994 * 120.01392 * 0.02562 * 22 16 13 36 36 H 1.09003 * 117.49462 * 215.00099 * 23 9 7 37 37 H 1.08995 * 117.49616 * 0.02562 * 23 9 7 38 38 H 1.09006 * 117.49746 * 359.97254 * 24 9 7 39 39 H 1.08998 * 117.50191 * 144.97613 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0795 -1.1969 -0.1038 9 6 1.2582 -2.4950 0.1465 10 6 0.7038 -3.0870 -1.1507 11 7 1.8170 -3.4588 -2.0343 12 6 1.3229 -3.9136 -3.3408 13 6 2.5085 -4.2906 -4.2313 14 1 3.1966 -3.4478 -4.2963 15 8 3.1862 -5.4168 -3.6707 16 6 2.0101 -4.6395 -5.6101 17 6 2.0902 -3.7092 -6.6298 18 6 1.6339 -4.0281 -7.8950 19 6 1.0974 -5.2777 -8.1423 20 6 1.0167 -6.2099 -7.1221 21 9 0.4930 -7.4318 -7.3627 22 6 1.4784 -5.8910 -5.8560 23 6 1.7459 -3.4729 1.2176 24 6 0.4402 -2.7007 1.4231 25 1 -0.4850 0.8400 0.0004 26 1 0.0763 -2.3476 -1.6485 27 1 0.1104 -3.9721 -0.9218 28 1 2.4010 -4.1604 -1.6043 29 1 0.7545 -3.1124 -3.8131 30 1 0.6801 -4.7831 -3.2036 31 1 2.6331 -6.2051 -3.5831 32 1 2.5096 -2.7327 -6.4377 33 1 1.6974 -3.3007 -8.6909 34 1 0.7413 -5.5267 -9.1311 35 1 1.4197 -6.6189 -5.0604 36 1 1.6718 -4.5379 0.9978 37 1 2.6063 -3.1749 1.8168 38 1 0.4423 -1.8952 2.1574 39 1 -0.4930 -3.2575 1.3386 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819280516.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:53 Heat of formation + Delta-G solvation = -48.046458 kcal Electronic energy + Delta-G solvation = -21128.050965 eV Core-core repulsion = 17757.577390 eV Total energy + Delta-G solvation = -3370.473576 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -49.08816 -39.76281 -37.45130 -36.60173 -33.86777 -31.84638 -31.70568 -30.77921 -28.05108 -25.58702 -24.43342 -22.98498 -22.40173 -21.29508 -20.93484 -18.96717 -18.07765 -16.74596 -16.48357 -16.36923 -15.82350 -15.77936 -15.27258 -14.62303 -14.50659 -14.23560 -13.84887 -13.64659 -13.49611 -13.09962 -12.77317 -12.55542 -12.12015 -11.86811 -11.67815 -11.43618 -11.25001 -11.02027 -10.89909 -10.65122 -10.43023 -10.20256 -10.10367 -9.44276 -9.17423 -8.86831 -8.76644 -8.34089 -8.03519 -7.57051 -5.93241 -3.94420 0.92417 0.96935 3.33348 3.35867 3.42309 3.46686 3.96741 4.32066 4.42524 4.49878 4.51764 4.73247 4.92592 5.08949 5.13120 5.25755 5.32706 5.37442 5.50327 5.57825 5.78799 5.84737 5.92862 5.98235 6.09427 6.19705 6.34337 6.36676 6.51199 6.64747 6.65788 6.76909 6.88786 7.14591 7.49908 7.55457 7.58662 7.92615 8.00119 8.17930 8.58973 9.04952 9.68588 11.16727 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.021630 B = 0.003815 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.189649 B = 7337.619336 C = 8011.698207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.067 3.933 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.468 4.468 8 H 0.060 0.940 9 C 0.053 3.947 10 C 0.108 3.892 11 N -0.664 5.664 12 C 0.036 3.964 13 C 0.147 3.853 14 H 0.124 0.876 15 O -0.550 6.550 16 C -0.078 4.078 17 C -0.117 4.117 18 C -0.088 4.088 19 C -0.159 4.159 20 C 0.098 3.902 21 F -0.142 7.142 22 C -0.148 4.148 23 C -0.215 4.215 24 C -0.159 4.159 25 H 0.257 0.743 26 H 0.076 0.924 27 H -0.007 1.007 28 H 0.337 0.663 29 H 0.079 0.921 30 H 0.021 0.979 31 H 0.368 0.632 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.416 -10.454 -13.994 17.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.135 4.135 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.200 1.200 7 C -0.506 4.506 8 H 0.078 0.922 9 C 0.052 3.948 10 C -0.021 4.021 11 N -0.295 5.295 12 C -0.094 4.094 13 C 0.088 3.912 14 H 0.141 0.859 15 O -0.354 6.354 16 C -0.079 4.079 17 C -0.135 4.135 18 C -0.106 4.106 19 C -0.177 4.177 20 C 0.079 3.921 21 F -0.120 7.120 22 C -0.167 4.167 23 C -0.252 4.252 24 C -0.197 4.197 25 H 0.066 0.934 26 H 0.094 0.906 27 H 0.011 0.989 28 H 0.155 0.845 29 H 0.098 0.902 30 H 0.039 0.961 31 H 0.215 0.785 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.838 -9.298 -14.191 17.065 hybrid contribution -0.748 -0.561 0.097 0.940 sum 1.090 -9.859 -14.094 17.234 Atomic orbital electron populations 1.70010 1.05818 1.26114 1.50553 1.24938 0.94747 0.98718 0.95088 0.86665 0.79937 0.83763 0.77999 1.20804 1.21507 1.19978 1.20314 0.92865 0.88373 1.49089 0.92219 1.18806 0.97128 0.93754 0.85127 1.21560 0.90546 0.95785 0.94206 1.60205 1.21763 1.45006 1.02506 1.22560 0.95028 0.98998 0.92815 1.21052 0.94815 0.89299 0.86064 0.85883 1.86681 1.41501 1.22515 1.84751 1.20554 0.96886 0.93207 0.97302 1.21176 1.00076 0.99916 0.92321 1.21035 0.96744 0.95642 0.97221 1.21150 1.03388 0.94162 0.99038 1.17642 0.98855 0.81081 0.94508 1.91499 1.84311 1.41171 1.95046 1.20853 1.01762 0.98120 0.95937 1.22992 0.98501 0.95410 1.08331 1.22523 0.91952 1.01188 1.04041 0.93365 0.90610 0.98867 0.84520 0.90220 0.96145 0.78500 0.84691 0.84809 0.84858 0.85033 0.92224 0.90482 0.90056 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.09 12.92 55.43 0.72 -24.37 16 2 C 0.07 1.83 5.39 -17.82 -0.10 1.73 16 3 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.47 -12.72 8.74 -34.44 -0.30 -13.02 16 8 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 9 C 0.05 1.28 1.55 -155.66 -0.24 1.04 16 10 C 0.11 2.37 5.51 -3.82 -0.02 2.35 16 11 N -0.66 -12.61 6.38 -113.78 -0.73 -13.34 16 12 C 0.04 0.55 5.33 -3.82 -0.02 0.53 16 13 C 0.15 1.90 3.45 -27.88 -0.10 1.81 16 14 H 0.12 1.70 8.00 -51.93 -0.42 1.29 16 15 O -0.55 -7.07 12.71 -35.23 -0.45 -7.52 16 16 C -0.08 -0.90 4.97 -104.63 -0.52 -1.42 16 17 C -0.12 -1.21 9.67 -39.58 -0.38 -1.59 16 18 C -0.09 -0.80 10.04 -39.59 -0.40 -1.20 16 19 C -0.16 -1.52 10.03 -39.51 -0.40 -1.91 16 20 C 0.10 1.09 7.30 -39.42 -0.29 0.80 16 21 F -0.14 -1.65 17.27 2.25 0.04 -1.61 16 22 C -0.15 -1.62 9.30 -39.51 -0.37 -1.99 16 23 C -0.21 -4.68 9.96 -26.69 -0.27 -4.95 16 24 C -0.16 -3.74 9.41 -26.69 -0.25 -4.00 16 25 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 26 H 0.08 1.87 8.13 -51.93 -0.42 1.44 16 27 H -0.01 -0.14 8.09 -51.93 -0.42 -0.56 16 28 H 0.34 6.18 8.35 -39.29 -0.33 5.85 16 29 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.37 3.52 7.50 45.56 0.34 3.86 16 32 H 0.14 1.24 8.04 -52.49 -0.42 0.82 16 33 H 0.13 0.87 8.06 -52.48 -0.42 0.44 16 34 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 35 H 0.13 1.23 6.77 -52.49 -0.36 0.88 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 38 H 0.08 2.05 8.14 -51.93 -0.42 1.62 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 336.75 15.07 5.07 5.07 Total: -1.00 -29.59 336.75 -8.96 -38.55 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -4.95 Total: 8.75 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -3.64 Total: -21.83 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: -0.01 Total: -37.71 kcal Atomic # 8 Polarization: -7.07 SS G_CDS: -0.45 Total: -7.52 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.59 -8.96 -38.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819280516.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.493 kcal (2) G-P(sol) polarization free energy of solvation -29.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds