Wall clock time and date at job start Wed Apr 15 2020 11:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99663 * 2 1 4 4 H 1.48501 * 109.47499 * 269.99789 * 3 2 1 5 5 H 1.48497 * 109.47282 * 30.00252 * 3 2 1 6 6 H 1.48503 * 109.47280 * 150.00008 * 3 2 1 7 7 C 1.37876 * 120.00307 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00070 * 173.59594 * 7 2 1 9 9 C 1.50696 * 120.00151 * 353.60225 * 7 2 1 10 10 C 1.52996 * 115.55442 * 85.43735 * 9 7 2 11 11 N 1.46907 * 109.46915 * 65.04957 * 10 9 7 12 12 C 1.46898 * 111.00050 * 185.34788 * 11 10 9 13 13 C 1.53002 * 109.46925 * 179.97438 * 12 11 10 14 14 H 1.08991 * 109.47382 * 305.00182 * 13 12 11 15 15 O 1.42901 * 109.46987 * 65.00881 * 13 12 11 16 16 C 1.50702 * 109.46664 * 185.00220 * 13 12 11 17 17 C 1.38268 * 119.98576 * 100.00523 * 16 13 12 18 18 C 1.38221 * 120.05056 * 179.97438 * 17 16 13 19 19 C 1.38219 * 120.02810 * 359.97438 * 18 17 16 20 20 C 1.38437 * 119.97233 * 0.02562 * 19 18 17 21 21 F 1.35102 * 120.02531 * 180.02562 * 20 19 18 22 22 C 1.38179 * 119.98814 * 279.72708 * 16 13 12 23 23 C 1.53007 * 117.49769 * 231.11437 * 9 7 2 24 24 C 1.53003 * 117.49755 * 299.77256 * 9 7 2 25 25 H 0.97000 * 120.00145 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47114 * 305.05258 * 10 9 7 27 27 H 1.08998 * 109.47613 * 185.04910 * 10 9 7 28 28 H 1.00898 * 110.99507 * 61.39647 * 11 10 9 29 29 H 1.09002 * 109.46557 * 60.00707 * 12 11 10 30 30 H 1.08993 * 109.47454 * 300.00496 * 12 11 10 31 31 H 0.96696 * 114.00113 * 59.99014 * 15 13 12 32 32 H 1.08001 * 119.97634 * 359.97438 * 17 16 13 33 33 H 1.08007 * 119.98581 * 180.02562 * 18 17 16 34 34 H 1.08004 * 120.01472 * 180.02562 * 19 18 17 35 35 H 1.07994 * 120.01392 * 0.02562 * 22 16 13 36 36 H 1.09003 * 117.49462 * 215.00099 * 23 9 7 37 37 H 1.08995 * 117.49616 * 0.02562 * 23 9 7 38 38 H 1.09006 * 117.49746 * 359.97254 * 24 9 7 39 39 H 1.08998 * 117.50191 * 144.97613 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0795 -1.1969 -0.1038 9 6 1.2582 -2.4950 0.1465 10 6 0.7038 -3.0870 -1.1507 11 7 1.8170 -3.4588 -2.0343 12 6 1.3229 -3.9136 -3.3408 13 6 2.5085 -4.2906 -4.2313 14 1 3.1966 -3.4478 -4.2963 15 8 3.1862 -5.4168 -3.6707 16 6 2.0101 -4.6395 -5.6101 17 6 2.0902 -3.7092 -6.6298 18 6 1.6339 -4.0281 -7.8950 19 6 1.0974 -5.2777 -8.1423 20 6 1.0167 -6.2099 -7.1221 21 9 0.4930 -7.4318 -7.3627 22 6 1.4784 -5.8910 -5.8560 23 6 1.7459 -3.4729 1.2176 24 6 0.4402 -2.7007 1.4231 25 1 -0.4850 0.8400 0.0004 26 1 0.0763 -2.3476 -1.6485 27 1 0.1104 -3.9721 -0.9218 28 1 2.4010 -4.1604 -1.6043 29 1 0.7545 -3.1124 -3.8131 30 1 0.6801 -4.7831 -3.2036 31 1 2.6331 -6.2051 -3.5831 32 1 2.5096 -2.7327 -6.4377 33 1 1.6974 -3.3007 -8.6909 34 1 0.7413 -5.5267 -9.1311 35 1 1.4197 -6.6189 -5.0604 36 1 1.6718 -4.5379 0.9978 37 1 2.6063 -3.1749 1.8168 38 1 0.4423 -1.8952 2.1574 39 1 -0.4930 -3.2575 1.3386 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819280516.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:52 Heat of formation + Delta-G solvation = -66.743069 kcal Electronic energy + Delta-G solvation = -21128.861711 eV Core-core repulsion = 17757.577390 eV Total energy + Delta-G solvation = -3371.284322 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.92976 -40.64217 -38.88044 -37.93705 -35.31824 -33.87175 -32.64543 -31.56449 -29.28909 -27.53261 -25.87934 -23.96229 -23.48780 -22.80214 -22.20959 -20.86142 -18.95129 -18.16685 -17.62018 -17.16146 -17.12809 -16.63782 -16.62124 -16.36738 -15.86378 -15.43947 -15.16087 -14.97866 -14.73392 -14.37708 -14.05548 -13.57900 -13.49420 -13.10623 -12.90240 -12.87554 -12.82824 -12.60452 -12.38873 -12.30622 -12.04848 -12.00546 -11.46471 -11.04069 -10.71737 -10.35385 -9.99825 -9.89393 -9.68568 -9.07367 -8.01879 -6.07991 0.11918 0.19644 1.44484 1.46059 1.55387 2.49754 2.53533 3.06992 3.27972 3.29532 3.48695 3.59259 3.74781 3.86734 4.04112 4.11505 4.19724 4.28155 4.36436 4.42564 4.55369 4.70432 4.71773 4.80514 4.83807 4.90446 5.00435 5.05333 5.08646 5.12789 5.29157 5.32854 5.50297 5.65154 5.75841 5.88919 5.89586 6.32525 6.52179 6.69412 6.77071 6.95394 7.57316 9.07206 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.021630 B = 0.003815 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.189649 B = 7337.619336 C = 8011.698207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.022 3.978 3 Si 0.944 3.056 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.480 4.480 8 H 0.047 0.953 9 C 0.025 3.975 10 C 0.123 3.877 11 N -0.675 5.675 12 C 0.041 3.959 13 C 0.162 3.838 14 H 0.111 0.889 15 O -0.560 6.560 16 C -0.091 4.091 17 C -0.125 4.125 18 C -0.085 4.085 19 C -0.156 4.156 20 C 0.080 3.920 21 F -0.148 7.148 22 C -0.153 4.153 23 C -0.188 4.188 24 C -0.167 4.167 25 H 0.256 0.744 26 H 0.042 0.958 27 H 0.006 0.994 28 H 0.342 0.658 29 H 0.067 0.933 30 H 0.034 0.966 31 H 0.382 0.618 32 H 0.143 0.857 33 H 0.163 0.837 34 H 0.155 0.845 35 H 0.143 0.857 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.949 -11.118 -15.194 18.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.177 4.177 3 Si 0.771 3.229 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.518 4.518 8 H 0.066 0.934 9 C 0.025 3.975 10 C -0.006 4.006 11 N -0.306 5.306 12 C -0.089 4.089 13 C 0.102 3.898 14 H 0.129 0.871 15 O -0.367 6.367 16 C -0.092 4.092 17 C -0.143 4.143 18 C -0.103 4.103 19 C -0.174 4.174 20 C 0.061 3.939 21 F -0.127 7.127 22 C -0.172 4.172 23 C -0.225 4.225 24 C -0.205 4.205 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.024 0.976 28 H 0.161 0.839 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.232 0.768 32 H 0.161 0.839 33 H 0.181 0.819 34 H 0.173 0.827 35 H 0.160 0.840 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.380 -9.982 -15.394 18.501 hybrid contribution -0.902 -0.396 0.440 1.079 sum 1.478 -10.378 -14.954 18.262 Atomic orbital electron populations 1.70111 1.06900 1.26596 1.51600 1.25569 0.95470 1.01544 0.95072 0.85777 0.78822 0.80310 0.77993 1.20429 1.21315 1.19658 1.20539 0.92509 0.90061 1.48717 0.93439 1.18935 0.98106 0.93979 0.86512 1.21196 0.90932 0.95195 0.93316 1.60077 1.21142 1.46020 1.03397 1.22565 0.96189 0.98960 0.91203 1.20741 0.93395 0.89150 0.86505 0.87095 1.86644 1.42149 1.23097 1.84828 1.20398 0.98200 0.93902 0.96689 1.21423 1.00006 1.00117 0.92800 1.21357 0.95583 0.95996 0.97359 1.21477 1.02404 0.93887 0.99664 1.17864 0.99680 0.81305 0.95096 1.91481 1.84511 1.41608 1.95087 1.20981 1.01566 0.98178 0.96481 1.22974 0.97122 0.96446 1.05990 1.22442 0.93428 1.01305 1.03303 0.93540 0.93951 0.97589 0.83940 0.91437 0.94773 0.76827 0.83935 0.81928 0.82721 0.83966 0.89307 0.90670 0.92462 0.91084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.37 12.92 21.45 0.28 -52.10 16 2 C 0.02 1.23 5.39 84.65 0.46 1.68 16 3 Si 0.94 44.02 29.54 68.60 2.03 46.04 16 4 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 5 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.48 -26.25 8.74 25.60 0.22 -26.03 16 8 H 0.05 2.65 7.82 -2.91 -0.02 2.62 16 9 C 0.03 1.23 1.55 -52.93 -0.08 1.15 16 10 C 0.12 5.38 5.51 86.30 0.48 5.85 16 11 N -0.68 -25.25 6.38 -513.89 -3.28 -28.53 16 12 C 0.04 1.20 5.33 86.30 0.46 1.66 16 13 C 0.16 4.04 3.45 29.85 0.10 4.14 16 14 H 0.11 3.03 8.00 -2.39 -0.02 3.01 16 15 O -0.56 -13.64 12.71 -148.98 -1.89 -15.53 16 16 C -0.09 -1.97 4.97 -19.87 -0.10 -2.07 16 17 C -0.13 -2.41 9.67 22.27 0.22 -2.19 16 18 C -0.09 -1.33 10.04 22.26 0.22 -1.11 16 19 C -0.16 -2.62 10.03 22.31 0.22 -2.40 16 20 C 0.08 1.64 7.30 22.38 0.16 1.80 16 21 F -0.15 -3.26 17.27 44.97 0.78 -2.49 16 22 C -0.15 -3.15 9.30 22.31 0.21 -2.95 16 23 C -0.19 -7.91 9.96 30.62 0.30 -7.60 16 24 C -0.17 -7.81 9.41 30.62 0.29 -7.52 16 25 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 26 H 0.04 2.12 8.13 -2.39 -0.02 2.10 16 27 H 0.01 0.25 8.09 -2.39 -0.02 0.23 16 28 H 0.34 12.12 8.35 -89.70 -0.75 11.37 16 29 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.38 6.65 7.50 -74.06 -0.56 6.10 16 32 H 0.14 2.44 8.04 -2.91 -0.02 2.42 16 33 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 34 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 35 H 0.14 2.46 6.77 -2.91 -0.02 2.44 16 36 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 37 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 38 H 0.06 2.92 8.14 -2.38 -0.02 2.90 16 39 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -62.86 336.75 0.83 -62.03 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: -0.24 Total: 26.15 kcal Atomic # 6 Polarization: -38.74 SS G_CDS: 3.16 Total: -35.58 kcal Atomic # 7 Polarization: -77.62 SS G_CDS: -3.00 Total: -80.62 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -1.89 Total: -15.53 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.78 Total: -2.49 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -62.86 0.83 -62.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819280516.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.718 kcal (2) G-P(sol) polarization free energy of solvation -62.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds