Wall clock time and date at job start Wed Apr 15 2020 11:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 119.99790 * 2 1 4 4 H 1.48496 * 109.47085 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47089 * 300.00056 * 3 2 1 6 6 H 1.48500 * 109.46710 * 59.99934 * 3 2 1 7 7 C 1.37875 * 120.00436 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99950 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00062 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.46996 * 300.00485 * 9 7 2 11 11 O 1.42904 * 109.46968 * 60.00026 * 9 7 2 12 12 C 1.52999 * 109.47381 * 180.02562 * 9 7 2 13 13 N 1.46904 * 109.47269 * 178.71951 * 12 9 7 14 14 C 1.47902 * 110.99942 * 184.22979 * 13 12 9 15 15 C 1.53999 * 107.05549 * 145.84064 * 14 13 12 16 16 C 1.54589 * 105.14002 * 358.77245 * 15 14 13 17 17 H 1.09005 * 110.72152 * 96.40510 * 16 15 14 18 18 C 1.50703 * 110.72304 * 219.50288 * 16 15 14 19 19 C 1.38265 * 119.98428 * 55.88105 * 18 16 15 20 20 C 1.38225 * 120.05138 * 179.72286 * 19 18 16 21 21 C 1.38220 * 120.02335 * 0.54767 * 20 19 18 22 22 C 1.38436 * 119.97383 * 359.72527 * 21 20 19 23 23 F 1.35107 * 120.02797 * 180.02562 * 22 21 20 24 24 C 1.38174 * 119.98994 * 236.14731 * 18 16 15 25 25 C 1.48538 * 110.99495 * 301.62298 * 13 12 9 26 26 H 0.97000 * 120.00535 * 0.02562 * 1 2 3 27 27 H 0.96699 * 113.99395 * 60.00365 * 11 9 7 28 28 H 1.08993 * 109.47037 * 58.71492 * 12 9 7 29 29 H 1.09006 * 109.46728 * 298.71232 * 12 9 7 30 30 H 1.09001 * 109.91787 * 26.49132 * 14 13 12 31 31 H 1.08993 * 110.07809 * 265.28489 * 14 13 12 32 32 H 1.08997 * 110.30402 * 239.85537 * 15 14 13 33 33 H 1.08998 * 110.38750 * 117.73568 * 15 14 13 34 34 H 1.07998 * 119.97662 * 359.97357 * 19 18 16 35 35 H 1.07998 * 119.99137 * 180.27028 * 20 19 18 36 36 H 1.07997 * 120.01309 * 179.74582 * 21 20 19 37 37 H 1.08007 * 120.01063 * 359.97438 * 24 18 16 38 38 H 1.09001 * 110.66673 * 81.84995 * 25 13 12 39 39 H 1.08999 * 110.66884 * 318.71252 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6248 -2.5570 0.8897 11 8 0.4292 -2.5746 -1.1670 12 6 2.2455 -3.6620 -0.0005 13 7 1.5113 -4.9340 0.0304 14 6 2.4406 -6.0800 0.1331 15 6 1.7396 -7.1551 0.9842 16 6 0.3797 -6.5348 1.3783 17 1 -0.4058 -6.8631 0.6976 18 6 0.0279 -6.8816 2.8021 19 6 0.9032 -6.5695 3.8258 20 6 0.5794 -6.8818 5.1328 21 6 -0.6150 -7.5169 5.4165 22 6 -1.4896 -7.8350 4.3917 23 9 -2.6577 -8.4554 4.6679 24 6 -1.1667 -7.5164 3.0833 25 6 0.6357 -5.0142 1.2276 26 1 -0.4851 0.8400 -0.0004 27 1 0.9211 -2.5291 -1.9983 28 1 2.8871 -3.5913 0.8776 29 1 2.8568 -3.6172 -0.9019 30 1 3.3647 -5.7663 0.6187 31 1 2.6583 -6.4753 -0.8590 32 1 2.3277 -7.3750 1.8752 33 1 1.5866 -8.0621 0.3994 34 1 1.8389 -6.0776 3.6046 35 1 1.2619 -6.6336 5.9322 36 1 -0.8659 -7.7646 6.4373 37 1 -1.8486 -7.7637 2.2830 38 1 -0.2998 -4.4817 1.0563 39 1 1.1480 -4.6214 2.1059 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929528312.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:13 Heat of formation + Delta-G solvation = -71.262950 kcal Electronic energy + Delta-G solvation = -21476.226644 eV Core-core repulsion = 18104.746326 eV Total energy + Delta-G solvation = -3371.480319 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -48.97148 -39.86241 -38.05660 -35.52698 -32.86228 -32.07248 -30.83565 -30.14341 -28.11989 -27.51223 -24.55117 -23.08830 -22.81718 -21.26959 -20.21498 -19.70644 -17.45575 -16.90779 -16.53836 -16.22826 -15.66857 -15.42394 -14.99807 -14.59274 -14.28011 -14.18880 -13.78883 -13.54743 -13.22297 -12.82690 -12.70161 -12.54316 -12.38318 -11.96181 -11.71850 -11.37743 -11.17889 -11.02575 -10.94590 -10.80230 -10.74754 -10.51797 -10.40226 -10.06101 -9.03061 -8.96105 -8.71615 -8.57330 -8.06181 -7.80409 -6.00822 -4.19366 1.05599 1.11071 3.26063 3.34444 3.37357 3.46608 4.07298 4.33176 4.42943 4.64674 4.73086 4.88146 4.95049 5.03790 5.11622 5.22503 5.26571 5.27179 5.51916 5.64318 5.75654 5.89333 5.94013 5.97067 6.02295 6.05689 6.08781 6.20637 6.24483 6.27940 6.44365 6.52646 6.55874 6.79641 6.80383 7.38172 7.57206 7.75051 7.85425 8.19780 8.84696 9.46038 9.62152 11.03365 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.021410 B = 0.003905 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.469590 B = 7169.325565 C = 7667.614967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.080 3.920 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.575 4.575 8 H 0.055 0.945 9 C 0.235 3.765 10 H 0.054 0.946 11 O -0.555 6.555 12 C 0.022 3.978 13 N -0.506 5.506 14 C 0.031 3.969 15 C -0.120 4.120 16 C -0.059 4.059 17 H 0.092 0.908 18 C -0.034 4.034 19 C -0.125 4.125 20 C -0.088 4.088 21 C -0.163 4.163 22 C 0.097 3.903 23 F -0.143 7.143 24 C -0.150 4.150 25 C 0.052 3.948 26 H 0.260 0.740 27 H 0.344 0.656 28 H 0.028 0.972 29 H 0.065 0.935 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.090 0.910 39 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.900 -16.031 7.395 17.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.126 4.126 3 Si 0.715 3.285 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.613 4.613 8 H 0.073 0.927 9 C 0.177 3.823 10 H 0.072 0.928 11 O -0.357 6.357 12 C -0.106 4.106 13 N -0.229 5.229 14 C -0.097 4.097 15 C -0.158 4.158 16 C -0.078 4.078 17 H 0.111 0.889 18 C -0.035 4.035 19 C -0.143 4.143 20 C -0.106 4.106 21 C -0.182 4.182 22 C 0.078 3.922 23 F -0.121 7.121 24 C -0.169 4.169 25 C -0.076 4.076 26 H 0.070 0.930 27 H 0.187 0.813 28 H 0.046 0.954 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.153 0.847 38 H 0.108 0.892 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.917 -16.007 7.375 17.648 hybrid contribution 1.296 1.023 0.511 1.728 sum 2.213 -14.983 7.886 17.076 Atomic orbital electron populations 1.70085 1.05918 1.26313 1.47061 1.25016 0.94664 0.99066 0.93832 0.86636 0.80205 0.83934 0.77722 1.19745 1.20818 1.20907 1.21694 0.93172 0.91641 1.54843 0.92699 1.19347 0.87765 0.88651 0.86562 0.92797 1.86552 1.37792 1.96298 1.15041 1.23257 0.97468 0.90167 0.99695 1.64811 1.17931 1.02396 1.37800 1.22902 0.94982 0.92238 0.99567 1.22506 0.95088 0.98516 0.99692 1.21171 0.98347 0.96883 0.91395 0.88928 1.19693 0.92884 0.95238 0.95675 1.21122 1.00271 1.00608 0.92266 1.20987 0.95849 0.96971 0.96838 1.21100 0.95290 1.02915 0.98866 1.17691 0.82903 0.97582 0.94011 1.91491 1.45791 1.80324 1.94539 1.21076 0.98453 1.02136 0.95207 1.23240 0.99106 0.93086 0.92123 0.93029 0.81325 0.95399 0.91664 0.94309 0.90834 0.91456 0.91088 0.85358 0.85075 0.85029 0.84668 0.89177 0.93745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.37 12.84 55.43 0.71 -24.66 16 2 C 0.08 2.24 5.40 -17.82 -0.10 2.15 16 3 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.58 -15.70 8.76 -34.44 -0.30 -16.00 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 9 C 0.23 5.89 2.61 -27.89 -0.07 5.82 16 10 H 0.05 1.48 6.83 -51.93 -0.35 1.13 16 11 O -0.56 -14.43 12.62 -35.23 -0.44 -14.88 16 12 C 0.02 0.45 4.43 -3.82 -0.02 0.43 16 13 N -0.51 -9.00 5.24 -230.45 -1.21 -10.21 16 14 C 0.03 0.44 6.70 -2.75 -0.02 0.43 16 15 C -0.12 -1.42 6.39 -25.37 -0.16 -1.58 16 16 C -0.06 -0.78 3.27 -89.91 -0.29 -1.07 16 17 H 0.09 1.21 7.95 -51.93 -0.41 0.80 16 18 C -0.03 -0.42 4.95 -104.63 -0.52 -0.94 16 19 C -0.12 -1.43 8.13 -39.58 -0.32 -1.75 16 20 C -0.09 -0.90 10.04 -39.59 -0.40 -1.30 16 21 C -0.16 -1.72 10.03 -39.52 -0.40 -2.12 16 22 C 0.10 1.17 7.30 -39.42 -0.29 0.88 16 23 F -0.14 -1.79 17.27 2.25 0.04 -1.75 16 24 C -0.15 -1.81 9.66 -39.52 -0.38 -2.19 16 25 C 0.05 0.88 4.74 -1.90 -0.01 0.87 16 26 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.34 8.05 9.04 45.56 0.41 8.46 16 28 H 0.03 0.56 7.97 -51.93 -0.41 0.15 16 29 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.04 0.54 7.67 -51.93 -0.40 0.14 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.73 6.87 -51.93 -0.36 0.37 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.13 1.41 7.28 -52.49 -0.38 1.03 16 35 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.14 1.47 7.98 -52.48 -0.42 1.05 16 38 H 0.09 1.74 7.63 -51.93 -0.40 1.35 16 39 H 0.04 0.75 6.90 -51.93 -0.36 0.40 16 LS Contribution 323.93 15.07 4.88 4.88 Total: -1.00 -30.46 323.93 -9.05 -39.51 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -4.73 Total: 7.45 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -3.27 Total: -16.38 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: -0.50 Total: -34.87 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.44 Total: -14.88 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.46 -9.05 -39.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929528312.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.753 kcal (2) G-P(sol) polarization free energy of solvation -30.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds