Wall clock time and date at job start Wed Apr 15 2020 11:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 119.99790 * 2 1 4 4 H 1.48496 * 109.47085 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47089 * 300.00056 * 3 2 1 6 6 H 1.48500 * 109.46710 * 59.99934 * 3 2 1 7 7 C 1.37875 * 120.00436 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99950 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00062 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.46996 * 300.00485 * 9 7 2 11 11 O 1.42904 * 109.46968 * 60.00026 * 9 7 2 12 12 C 1.52999 * 109.47381 * 180.02562 * 9 7 2 13 13 N 1.46904 * 109.47269 * 178.71951 * 12 9 7 14 14 C 1.47902 * 110.99942 * 184.22979 * 13 12 9 15 15 C 1.53999 * 107.05549 * 145.84064 * 14 13 12 16 16 C 1.54589 * 105.14002 * 358.77245 * 15 14 13 17 17 H 1.09005 * 110.72152 * 96.40510 * 16 15 14 18 18 C 1.50703 * 110.72304 * 219.50288 * 16 15 14 19 19 C 1.38265 * 119.98428 * 55.88105 * 18 16 15 20 20 C 1.38225 * 120.05138 * 179.72286 * 19 18 16 21 21 C 1.38220 * 120.02335 * 0.54767 * 20 19 18 22 22 C 1.38436 * 119.97383 * 359.72527 * 21 20 19 23 23 F 1.35107 * 120.02797 * 180.02562 * 22 21 20 24 24 C 1.38174 * 119.98994 * 236.14731 * 18 16 15 25 25 C 1.48538 * 110.99495 * 301.62298 * 13 12 9 26 26 H 0.97000 * 120.00535 * 0.02562 * 1 2 3 27 27 H 0.96699 * 113.99395 * 60.00365 * 11 9 7 28 28 H 1.08993 * 109.47037 * 58.71492 * 12 9 7 29 29 H 1.09006 * 109.46728 * 298.71232 * 12 9 7 30 30 H 1.09001 * 109.91787 * 26.49132 * 14 13 12 31 31 H 1.08993 * 110.07809 * 265.28489 * 14 13 12 32 32 H 1.08997 * 110.30402 * 239.85537 * 15 14 13 33 33 H 1.08998 * 110.38750 * 117.73568 * 15 14 13 34 34 H 1.07998 * 119.97662 * 359.97357 * 19 18 16 35 35 H 1.07998 * 119.99137 * 180.27028 * 20 19 18 36 36 H 1.07997 * 120.01309 * 179.74582 * 21 20 19 37 37 H 1.08007 * 120.01063 * 359.97438 * 24 18 16 38 38 H 1.09001 * 110.66673 * 81.84995 * 25 13 12 39 39 H 1.08999 * 110.66884 * 318.71252 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6248 -2.5570 0.8897 11 8 0.4292 -2.5746 -1.1670 12 6 2.2455 -3.6620 -0.0005 13 7 1.5113 -4.9340 0.0304 14 6 2.4406 -6.0800 0.1331 15 6 1.7396 -7.1551 0.9842 16 6 0.3797 -6.5348 1.3783 17 1 -0.4058 -6.8631 0.6976 18 6 0.0279 -6.8816 2.8021 19 6 0.9032 -6.5695 3.8258 20 6 0.5794 -6.8818 5.1328 21 6 -0.6150 -7.5169 5.4165 22 6 -1.4896 -7.8350 4.3917 23 9 -2.6577 -8.4554 4.6679 24 6 -1.1667 -7.5164 3.0833 25 6 0.6357 -5.0142 1.2276 26 1 -0.4851 0.8400 -0.0004 27 1 0.9211 -2.5291 -1.9983 28 1 2.8871 -3.5913 0.8776 29 1 2.8568 -3.6172 -0.9019 30 1 3.3647 -5.7663 0.6187 31 1 2.6583 -6.4753 -0.8590 32 1 2.3277 -7.3750 1.8752 33 1 1.5866 -8.0621 0.3994 34 1 1.8389 -6.0776 3.6046 35 1 1.2619 -6.6336 5.9322 36 1 -0.8659 -7.7646 6.4373 37 1 -1.8486 -7.7637 2.2830 38 1 -0.2998 -4.4817 1.0563 39 1 1.1480 -4.6214 2.1059 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929528312.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:10 Heat of formation + Delta-G solvation = -91.643312 kcal Electronic energy + Delta-G solvation = -21477.110403 eV Core-core repulsion = 18104.746326 eV Total energy + Delta-G solvation = -3372.364077 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -49.90627 -40.91672 -39.25666 -37.35987 -34.27989 -34.03425 -31.84938 -31.27339 -29.42222 -29.11657 -26.30964 -24.25288 -23.73713 -22.69511 -21.54454 -21.01436 -19.07880 -18.25108 -17.55487 -17.11476 -16.72212 -16.60550 -16.56423 -16.46057 -15.94140 -15.62911 -14.98909 -14.79851 -14.50475 -14.14749 -13.91997 -13.70672 -13.63559 -13.39129 -12.99070 -12.87641 -12.81540 -12.56985 -12.34440 -12.26532 -12.05611 -11.99220 -11.80967 -11.47749 -10.97100 -10.70320 -10.06446 -9.91324 -9.63394 -9.21657 -8.13567 -6.39896 0.15925 0.24311 1.39535 1.40872 1.52941 2.38340 2.57924 3.02740 3.13010 3.31245 3.63080 3.73718 3.84813 3.95655 4.11919 4.18612 4.26026 4.33943 4.35088 4.36965 4.47480 4.58038 4.61539 4.79654 4.88952 4.92539 5.03514 5.05554 5.07396 5.12472 5.16565 5.26013 5.36216 5.57706 5.60295 5.75288 5.92938 5.97698 6.12095 6.21636 6.74126 7.34812 7.61770 8.91185 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.021410 B = 0.003905 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.469590 B = 7169.325565 C = 7667.614967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.026 3.974 3 Si 0.960 3.040 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.589 4.589 8 H 0.060 0.940 9 C 0.235 3.765 10 H 0.020 0.980 11 O -0.572 6.572 12 C 0.040 3.960 13 N -0.521 5.521 14 C 0.030 3.970 15 C -0.110 4.110 16 C -0.048 4.048 17 H 0.090 0.910 18 C -0.046 4.046 19 C -0.131 4.131 20 C -0.085 4.085 21 C -0.159 4.159 22 C 0.080 3.920 23 F -0.149 7.149 24 C -0.159 4.159 25 C 0.054 3.946 26 H 0.261 0.739 27 H 0.353 0.647 28 H 0.029 0.971 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.133 0.867 35 H 0.160 0.840 36 H 0.154 0.846 37 H 0.139 0.861 38 H 0.052 0.948 39 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.630 -16.865 8.167 19.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.176 4.176 3 Si 0.784 3.216 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.627 4.627 8 H 0.078 0.922 9 C 0.177 3.823 10 H 0.037 0.963 11 O -0.375 6.375 12 C -0.088 4.088 13 N -0.245 5.245 14 C -0.097 4.097 15 C -0.148 4.148 16 C -0.067 4.067 17 H 0.109 0.891 18 C -0.047 4.047 19 C -0.149 4.149 20 C -0.103 4.103 21 C -0.178 4.178 22 C 0.061 3.939 23 F -0.128 7.128 24 C -0.178 4.178 25 C -0.074 4.074 26 H 0.070 0.930 27 H 0.197 0.803 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.151 0.849 35 H 0.178 0.822 36 H 0.172 0.828 37 H 0.157 0.843 38 H 0.070 0.930 39 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.665 -16.859 8.144 18.912 hybrid contribution 0.724 1.252 0.287 1.475 sum 3.389 -15.607 8.431 18.059 Atomic orbital electron populations 1.70229 1.07740 1.27291 1.48499 1.25895 0.95434 1.02929 0.93342 0.85510 0.79200 0.79152 0.77707 1.18576 1.20468 1.20532 1.22099 0.93569 0.92827 1.54206 0.92204 1.19203 0.87764 0.90235 0.85061 0.96263 1.86499 1.38761 1.96460 1.15793 1.22856 0.96063 0.89966 0.99942 1.64711 1.18857 1.02379 1.38514 1.22994 0.94595 0.91257 1.00880 1.22485 0.93833 0.98249 1.00200 1.21021 0.99348 0.93995 0.92327 0.89121 1.19623 0.93449 0.96290 0.95322 1.21294 1.00349 1.00512 0.92782 1.21313 0.96034 0.95911 0.97017 1.21414 0.94878 1.01905 0.99607 1.17904 0.83190 0.98305 0.94479 1.91473 1.46204 1.80536 1.94561 1.21176 0.98541 1.02369 0.95694 1.23103 0.97183 0.95543 0.91544 0.93014 0.80261 0.95269 0.91145 0.93651 0.89733 0.89878 0.89083 0.84894 0.82213 0.82804 0.84268 0.92988 0.94252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.41 12.84 21.45 0.28 -54.14 16 2 C 0.03 1.48 5.40 84.66 0.46 1.94 16 3 Si 0.96 43.28 29.54 68.60 2.03 45.31 16 4 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.59 -32.40 8.76 25.60 0.22 -32.18 16 8 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 9 C 0.24 12.13 2.61 29.85 0.08 12.21 16 10 H 0.02 1.13 6.83 -2.39 -0.02 1.11 16 11 O -0.57 -30.61 12.62 -148.98 -1.88 -32.49 16 12 C 0.04 1.64 4.43 86.30 0.38 2.02 16 13 N -0.52 -18.45 5.24 -883.00 -4.63 -23.08 16 14 C 0.03 0.80 6.70 86.45 0.58 1.38 16 15 C -0.11 -2.35 6.39 31.47 0.20 -2.15 16 16 C -0.05 -1.23 3.27 -10.34 -0.03 -1.27 16 17 H 0.09 2.35 7.95 -2.38 -0.02 2.33 16 18 C -0.05 -1.10 4.95 -19.87 -0.10 -1.20 16 19 C -0.13 -2.81 8.13 22.27 0.18 -2.63 16 20 C -0.09 -1.52 10.04 22.26 0.22 -1.30 16 21 C -0.16 -3.04 10.03 22.31 0.22 -2.82 16 22 C 0.08 1.85 7.30 22.37 0.16 2.02 16 23 F -0.15 -3.64 17.27 44.97 0.78 -2.86 16 24 C -0.16 -3.77 9.66 22.31 0.22 -3.55 16 25 C 0.05 1.87 4.74 86.65 0.41 2.28 16 26 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 27 H 0.35 16.89 9.04 -74.06 -0.67 16.22 16 28 H 0.03 1.17 7.97 -2.39 -0.02 1.15 16 29 H 0.07 2.78 8.14 -2.38 -0.02 2.76 16 30 H 0.05 1.15 7.67 -2.39 -0.02 1.13 16 31 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.08 1.55 6.87 -2.39 -0.02 1.53 16 33 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.13 2.68 7.28 -2.91 -0.02 2.66 16 35 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 36 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 37 H 0.14 3.04 7.98 -2.91 -0.02 3.01 16 38 H 0.05 2.15 7.63 -2.39 -0.02 2.14 16 39 H 0.04 1.37 6.90 -2.39 -0.02 1.36 16 Total: -1.00 -66.18 323.93 0.16 -66.02 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 0.39 Total: 26.49 kcal Atomic # 6 Polarization: -28.46 SS G_CDS: 3.21 Total: -25.25 kcal Atomic # 7 Polarization: -72.86 SS G_CDS: -4.35 Total: -77.21 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -1.88 Total: -32.49 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.78 Total: -2.86 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -66.18 0.16 -66.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929528312.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.626 kcal (2) G-P(sol) polarization free energy of solvation -66.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds