Wall clock time and date at job start Wed Apr 15 2020 11:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00041 * 2 1 4 4 H 1.48501 * 109.47323 * 274.69609 * 3 2 1 5 5 H 1.48505 * 109.46981 * 34.69214 * 3 2 1 6 6 H 1.48496 * 109.47351 * 154.69358 * 3 2 1 7 7 C 1.38811 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00372 * 334.67418 * 7 2 1 9 9 N 1.36941 * 119.99836 * 154.67186 * 7 2 1 10 10 C 1.46504 * 119.99676 * 142.75989 * 9 7 2 11 11 C 1.50703 * 109.46978 * 90.00317 * 10 9 7 12 12 C 1.38266 * 119.98610 * 270.01914 * 11 10 9 13 13 C 1.38218 * 120.05001 * 179.97438 * 12 11 10 14 14 C 1.38217 * 120.02899 * 359.72060 * 13 12 11 15 15 C 1.38444 * 119.97130 * 0.55705 * 14 13 12 16 16 F 1.35099 * 120.02726 * 179.72038 * 15 14 13 17 17 C 1.38172 * 119.98481 * 89.99826 * 11 10 9 18 18 C 1.46499 * 120.00312 * 322.76406 * 9 7 2 19 19 C 1.53001 * 109.46775 * 275.04049 * 18 9 7 20 20 H 1.09003 * 109.82526 * 300.36335 * 19 18 9 21 21 C 1.54382 * 109.82776 * 179.48176 * 19 18 9 22 22 C 1.55452 * 102.18408 * 219.17687 * 21 19 18 23 23 C 1.54952 * 100.98928 * 34.04352 * 22 21 19 24 24 O 1.43236 * 109.83289 * 61.25326 * 19 18 9 25 25 H 0.97000 * 120.00192 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47216 * 330.00229 * 10 9 7 27 27 H 1.09004 * 109.46931 * 210.00295 * 10 9 7 28 28 H 1.07997 * 119.97334 * 359.95824 * 12 11 10 29 29 H 1.08007 * 119.98732 * 180.02562 * 13 12 11 30 30 H 1.07996 * 120.01790 * 180.30151 * 14 13 12 31 31 H 1.07998 * 120.01668 * 0.04433 * 17 11 10 32 32 H 1.09005 * 109.47303 * 35.03368 * 18 9 7 33 33 H 1.08994 * 109.47257 * 155.03951 * 18 9 7 34 34 H 1.08993 * 110.84879 * 337.31435 * 21 19 18 35 35 H 1.08997 * 110.84963 * 100.94119 * 21 19 18 36 36 H 1.08995 * 111.06417 * 276.12487 * 22 21 19 37 37 H 1.09003 * 111.18142 * 152.00573 * 22 21 19 38 38 H 1.09000 * 110.30834 * 204.69337 * 23 22 21 39 39 H 1.08994 * 110.39717 * 82.56042 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3985 2.1038 -1.3954 5 1 1.5007 2.6220 0.7969 6 1 3.5938 1.4136 0.5984 7 6 2.0102 -1.2021 -0.0005 8 1 1.5482 -2.0927 0.3991 9 7 3.2809 -1.2589 -0.5079 10 6 4.2871 -2.1112 0.1304 11 6 4.2489 -3.4842 -0.4898 12 6 3.4227 -4.4586 0.0391 13 6 3.3862 -5.7181 -0.5290 14 6 4.1714 -6.0033 -1.6302 15 6 5.0033 -5.0302 -2.1571 16 9 5.7754 -5.3094 -3.2299 17 6 5.0391 -3.7686 -1.5870 18 6 3.6342 -0.4673 -1.6889 19 6 3.2513 -1.2390 -2.9533 20 1 3.7811 -2.1913 -2.9798 21 6 3.6083 -0.4063 -4.2033 22 6 2.4011 -0.6884 -5.1412 23 6 1.2507 -0.8175 -4.1111 24 8 1.8377 -1.4687 -2.9731 25 1 -0.4850 0.8400 0.0004 26 1 4.0745 -2.1881 1.1967 27 1 5.2759 -1.6754 -0.0125 28 1 2.8057 -4.2355 0.8969 29 1 2.7402 -6.4784 -0.1153 30 1 4.1391 -6.9860 -2.0769 31 1 5.6846 -3.0074 -1.9997 32 1 3.0965 0.4806 -1.6651 33 1 4.7073 -0.2764 -1.6907 34 1 3.6696 0.6540 -3.9586 35 1 4.5386 -0.7569 -4.6503 36 1 2.5416 -1.6185 -5.6917 37 1 2.2275 0.1456 -5.8213 38 1 0.4433 -1.4251 -4.5199 39 1 0.8779 0.1680 -3.8324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050963934.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:47 Heat of formation + Delta-G solvation = -55.000558 kcal Electronic energy + Delta-G solvation = -22824.953624 eV Core-core repulsion = 19454.178496 eV Total energy + Delta-G solvation = -3370.775128 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.81875 -40.47661 -39.78782 -37.24587 -33.89095 -32.95908 -32.47358 -31.49721 -30.62840 -27.57358 -26.80943 -23.92810 -23.51580 -22.58857 -22.04732 -21.77013 -18.73669 -18.13968 -17.83246 -17.15882 -17.00943 -16.97051 -16.54822 -16.51117 -15.88672 -15.25163 -15.01371 -14.83118 -14.50685 -14.26554 -14.21895 -13.91234 -13.76736 -13.29259 -12.99873 -12.76771 -12.65279 -12.45297 -12.31165 -12.10012 -12.06011 -11.81604 -11.76997 -11.58535 -11.41649 -10.54234 -10.26624 -9.76268 -9.51097 -8.64438 -8.05207 -5.38373 0.33115 0.39378 1.31382 1.43024 1.52443 2.51968 2.69734 3.10919 3.21746 3.36043 3.63599 3.73337 3.89333 3.97070 4.00469 4.05787 4.23539 4.33160 4.40339 4.45253 4.52264 4.55466 4.66990 4.73842 4.82432 4.88658 4.89976 4.98392 5.05426 5.07830 5.15242 5.21754 5.25258 5.38161 5.47811 5.76941 6.05429 6.08670 6.31382 6.51384 7.09384 7.76327 8.15703 9.15029 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.015950 B = 0.007782 C = 0.006285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.021326 B = 3597.055146 C = 4453.744337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.007 4.007 3 Si 0.925 3.075 4 H -0.283 1.283 5 H -0.316 1.316 6 H -0.257 1.257 7 C -0.223 4.223 8 H 0.035 0.965 9 N -0.598 5.598 10 C 0.174 3.826 11 C -0.063 4.063 12 C -0.126 4.126 13 C -0.092 4.092 14 C -0.164 4.164 15 C 0.078 3.922 16 F -0.148 7.148 17 C -0.150 4.150 18 C 0.117 3.883 19 C 0.059 3.941 20 H 0.071 0.929 21 C -0.150 4.150 22 C -0.140 4.140 23 C 0.039 3.961 24 O -0.377 6.377 25 H 0.255 0.745 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.117 0.883 29 H 0.151 0.849 30 H 0.152 0.848 31 H 0.138 0.862 32 H 0.032 0.968 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.413 -6.210 -7.527 15.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.203 4.203 3 Si 0.755 3.245 4 H -0.211 1.211 5 H -0.245 1.245 6 H -0.181 1.181 7 C -0.353 4.353 8 H 0.053 0.947 9 N -0.318 5.318 10 C 0.049 3.951 11 C -0.065 4.065 12 C -0.145 4.145 13 C -0.110 4.110 14 C -0.183 4.183 15 C 0.059 3.941 16 F -0.127 7.127 17 C -0.170 4.170 18 C -0.008 4.008 19 C 0.000 4.000 20 H 0.089 0.911 21 C -0.188 4.188 22 C -0.178 4.178 23 C -0.038 4.038 24 O -0.296 6.296 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.135 0.865 29 H 0.169 0.831 30 H 0.169 0.831 31 H 0.156 0.844 32 H 0.050 0.950 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.122 0.878 36 H 0.105 0.895 37 H 0.117 0.883 38 H 0.097 0.903 39 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 11.217 -6.221 -7.364 14.790 hybrid contribution -0.242 1.061 -0.156 1.099 sum 10.974 -5.161 -7.520 14.269 Atomic orbital electron populations 1.70071 1.07601 1.26464 1.54517 1.25757 0.95173 1.00169 0.99173 0.86155 0.79899 0.81720 0.76685 1.21058 1.24478 1.18060 1.18305 0.89340 0.92588 1.35095 0.94689 1.44029 1.08539 1.50867 1.28414 1.20111 0.92635 0.86399 0.95952 1.20750 0.93816 0.97171 0.94808 1.21276 0.98423 0.93601 1.01182 1.21230 0.97978 0.96900 0.94927 1.21278 0.98261 1.00116 0.98628 1.17834 0.94285 0.95215 0.86771 1.91447 1.73558 1.94283 1.53441 1.21016 1.02615 0.95596 0.97726 1.21840 0.98502 0.93736 0.86698 1.23531 0.82433 0.98520 0.95554 0.91075 1.23242 1.00160 1.00611 0.94783 1.23223 0.93428 1.03627 0.97481 1.23401 0.97224 0.96581 0.86592 1.88718 1.20721 1.73628 1.46547 0.93646 0.91700 0.90509 0.86529 0.83113 0.83062 0.84396 0.95042 0.90082 0.91037 0.87753 0.89520 0.88278 0.90272 0.95132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.30 13.97 21.65 0.30 -59.00 16 2 C -0.01 -0.39 5.28 84.86 0.45 0.06 16 3 Si 0.93 45.90 25.27 68.60 1.73 47.63 16 4 H -0.28 -13.55 6.60 99.48 0.66 -12.89 16 5 H -0.32 -16.12 7.11 99.48 0.71 -15.41 16 6 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.22 -12.37 9.03 84.03 0.76 -11.61 16 8 H 0.04 2.18 8.06 -2.91 -0.02 2.16 16 9 N -0.60 -26.85 2.05 -706.33 -1.45 -28.30 16 10 C 0.17 6.34 5.83 85.63 0.50 6.84 16 11 C -0.06 -2.13 5.44 -19.87 -0.11 -2.24 16 12 C -0.13 -4.22 9.70 22.27 0.22 -4.00 16 13 C -0.09 -2.58 10.04 22.26 0.22 -2.36 16 14 C -0.16 -4.40 10.03 22.31 0.22 -4.18 16 15 C 0.08 2.30 7.30 22.38 0.16 2.46 16 16 F -0.15 -4.27 17.27 44.97 0.78 -3.49 16 17 C -0.15 -4.59 7.81 22.31 0.17 -4.41 16 18 C 0.12 4.77 4.38 86.38 0.38 5.15 16 19 C 0.06 2.24 3.79 31.06 0.12 2.36 16 20 H 0.07 2.63 6.05 -2.39 -0.01 2.62 16 21 C -0.15 -4.26 6.56 31.91 0.21 -4.05 16 22 C -0.14 -3.78 7.16 32.11 0.23 -3.55 16 23 C 0.04 1.45 7.78 72.65 0.57 2.02 16 24 O -0.38 -17.48 10.12 -148.98 -1.51 -18.98 16 25 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 26 H 0.06 2.40 7.98 -2.39 -0.02 2.38 16 27 H 0.08 2.34 7.80 -2.38 -0.02 2.32 16 28 H 0.12 4.08 8.06 -2.91 -0.02 4.06 16 29 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 30 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 31 H 0.14 3.75 8.01 -2.91 -0.02 3.73 16 32 H 0.03 1.45 3.23 -2.38 -0.01 1.44 16 33 H 0.08 2.70 7.84 -2.39 -0.02 2.68 16 34 H 0.07 2.04 7.85 -2.39 -0.02 2.02 16 35 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 39 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -69.12 319.63 4.94 -64.17 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.99 Total: 15.49 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: 4.10 Total: -17.52 kcal Atomic # 7 Polarization: -86.15 SS G_CDS: -1.15 Total: -87.30 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -1.51 Total: -18.98 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.78 Total: -3.49 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.73 Total: 47.63 kcal Total: -69.12 4.94 -64.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050963934.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.173 kcal (2) G-P(sol) polarization free energy of solvation -69.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds