Wall clock time and date at job start Wed Apr 15 2020 11:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00456 * 2 1 4 4 H 1.48499 * 109.47180 * 264.00624 * 3 2 1 5 5 H 1.48501 * 109.46821 * 24.00438 * 3 2 1 6 6 H 1.48495 * 109.47098 * 144.00155 * 3 2 1 7 7 C 1.38816 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99543 * 216.96505 * 7 2 1 9 9 N 1.36930 * 120.00220 * 36.96571 * 7 2 1 10 10 C 1.46506 * 120.00219 * 203.70055 * 9 7 2 11 11 C 1.50703 * 109.46684 * 92.60633 * 10 9 7 12 12 C 1.38272 * 119.98511 * 87.04819 * 11 10 9 13 13 C 1.38219 * 120.05111 * 180.02562 * 12 11 10 14 14 C 1.38222 * 120.02425 * 359.97438 * 13 12 11 15 15 C 1.38431 * 119.97514 * 0.02575 * 14 13 12 16 16 F 1.35105 * 120.02632 * 180.02562 * 15 14 13 17 17 C 1.38173 * 119.99004 * 267.04800 * 11 10 9 18 18 C 1.46503 * 120.00126 * 23.70671 * 9 7 2 19 19 C 1.52997 * 109.47374 * 92.62171 * 18 9 7 20 20 H 1.08997 * 109.87354 * 60.84117 * 19 18 9 21 21 C 1.54099 * 109.87698 * 181.85228 * 19 18 9 22 22 C 1.54812 * 104.18911 * 121.45038 * 21 19 18 23 23 C 1.55000 * 102.09237 * 20.88089 * 22 21 19 24 24 O 1.43752 * 109.87722 * 299.67745 * 19 18 9 25 25 H 0.97006 * 119.99330 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47036 * 332.61102 * 10 9 7 27 27 H 1.08995 * 109.47326 * 212.60905 * 10 9 7 28 28 H 1.07997 * 119.97233 * 0.27798 * 12 11 10 29 29 H 1.08003 * 119.99062 * 180.02562 * 13 12 11 30 30 H 1.08000 * 120.01197 * 180.02562 * 14 13 12 31 31 H 1.07997 * 120.00994 * 0.02562 * 17 11 10 32 32 H 1.09000 * 109.47121 * 212.62546 * 18 9 7 33 33 H 1.09000 * 109.46935 * 332.62089 * 18 9 7 34 34 H 1.09003 * 110.48722 * 240.12720 * 21 19 18 35 35 H 1.08995 * 110.48872 * 2.64039 * 21 19 18 36 36 H 1.09007 * 110.90736 * 139.07207 * 22 21 19 37 37 H 1.08989 * 110.90945 * 262.67882 * 22 21 19 38 38 H 1.08994 * 110.61831 * 81.47263 * 23 22 21 39 39 H 1.08999 * 110.61771 * 204.47885 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6245 1.9733 -1.3924 5 1 1.3902 2.6859 0.5696 6 1 3.4787 1.4799 0.8229 7 6 2.0102 -1.2022 -0.0005 8 1 2.9274 -1.2964 0.5619 9 7 1.5319 -2.2686 -0.7141 10 6 1.9155 -3.6320 -0.3394 11 6 0.8898 -4.2000 0.6075 12 6 -0.2320 -4.8372 0.1100 13 6 -1.1738 -5.3581 0.9772 14 6 -0.9949 -5.2430 2.3430 15 6 0.1278 -4.6053 2.8422 16 9 0.3039 -4.4927 4.1769 17 6 1.0707 -4.0837 1.9724 18 6 0.6368 -2.0461 -1.8523 19 6 1.4603 -1.9555 -3.1387 20 1 2.0009 -2.8883 -3.2990 21 6 0.5320 -1.6753 -4.3363 22 6 1.0677 -0.3494 -4.9295 23 6 2.5158 -0.3088 -4.3784 24 8 2.3862 -0.8595 -3.0501 25 1 -0.4849 0.8402 0.0004 26 1 2.8899 -3.6142 0.1486 27 1 1.9681 -4.2533 -1.2334 28 1 -0.3703 -4.9315 -0.9569 29 1 -2.0494 -5.8560 0.5876 30 1 -1.7307 -5.6505 3.0204 31 1 1.9468 -3.5856 2.3607 32 1 -0.0666 -2.8752 -1.9288 33 1 0.0876 -1.1160 -1.7063 34 1 0.6034 -2.4780 -5.0703 35 1 -0.4983 -1.5568 -4.0009 36 1 1.0670 -0.3824 -6.0191 37 1 0.4895 0.5005 -4.5670 38 1 3.1757 -0.9266 -4.9873 39 1 2.8811 0.7172 -4.3345 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050963935.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:51 Heat of formation + Delta-G solvation = -42.247059 kcal Electronic energy + Delta-G solvation = -22281.091712 eV Core-core repulsion = 18910.869617 eV Total energy + Delta-G solvation = -3370.222095 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.36079 -38.83303 -38.38595 -35.43054 -31.97979 -31.51680 -30.70513 -29.86274 -29.01030 -25.68137 -25.10582 -22.34962 -22.10384 -21.38325 -20.55515 -19.84232 -17.03393 -16.61053 -15.71002 -15.65358 -15.56035 -15.20455 -15.03250 -14.68424 -14.34121 -13.72108 -13.58507 -13.35607 -13.08644 -12.87029 -12.64233 -11.95119 -11.63526 -11.47921 -11.34663 -11.15329 -10.99496 -10.87392 -10.69869 -10.61789 -10.45867 -10.33060 -10.07084 -9.91756 -9.73731 -8.88176 -8.36410 -8.31729 -8.07289 -6.78503 -5.83106 -3.08834 1.77662 1.84788 3.48355 3.54235 3.60170 4.17881 4.54364 4.65616 4.81687 5.07489 5.20361 5.25845 5.31602 5.38386 5.49633 5.54369 5.65129 5.70042 5.82517 5.85228 5.99239 6.09505 6.10587 6.17099 6.17223 6.37107 6.40888 6.47760 6.53700 6.66406 6.67247 6.72109 6.74535 6.90730 7.25687 7.53009 7.59659 7.76333 7.88409 8.40576 9.13844 9.84711 10.32815 11.19683 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.017639 B = 0.006267 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.997338 B = 4466.762113 C = 5486.211271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.022 3.978 3 Si 0.886 3.114 4 H -0.282 1.282 5 H -0.299 1.299 6 H -0.281 1.281 7 C -0.247 4.247 8 H 0.066 0.934 9 N -0.562 5.562 10 C 0.173 3.827 11 C -0.050 4.050 12 C -0.127 4.127 13 C -0.097 4.097 14 C -0.178 4.178 15 C 0.092 3.908 16 F -0.151 7.151 17 C -0.134 4.134 18 C 0.140 3.860 19 C 0.061 3.939 20 H 0.045 0.955 21 C -0.150 4.150 22 C -0.152 4.152 23 C 0.039 3.961 24 O -0.334 6.334 25 H 0.253 0.747 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.128 0.872 32 H 0.036 0.964 33 H 0.106 0.894 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.046 0.954 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.559 -7.624 -5.969 9.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.178 4.178 3 Si 0.716 3.284 4 H -0.209 1.209 5 H -0.226 1.226 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.084 0.916 9 N -0.279 5.279 10 C 0.046 3.954 11 C -0.054 4.054 12 C -0.147 4.147 13 C -0.115 4.115 14 C -0.197 4.197 15 C 0.073 3.927 16 F -0.130 7.130 17 C -0.154 4.154 18 C 0.014 3.986 19 C 0.001 3.999 20 H 0.063 0.937 21 C -0.189 4.189 22 C -0.190 4.190 23 C -0.039 4.039 24 O -0.252 6.252 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.135 0.865 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.146 0.854 32 H 0.054 0.946 33 H 0.124 0.876 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.532 -7.388 -5.714 9.355 hybrid contribution 0.096 0.959 0.002 0.963 sum -0.436 -6.429 -5.712 8.611 Atomic orbital electron populations 1.70246 1.05868 1.25954 1.49297 1.24626 0.94384 0.98587 1.00239 0.86562 0.79795 0.83912 0.78143 1.20922 1.22605 1.20682 1.18936 1.02478 0.88682 1.27438 0.91578 1.44126 1.54983 0.99521 1.29266 1.20121 0.94295 0.87091 0.93864 1.21027 0.98093 0.92037 0.94213 1.20975 0.94674 0.99659 0.99348 1.20817 0.98709 0.99622 0.92358 1.20847 0.97848 1.04584 0.96433 1.17757 0.96703 1.01499 0.76785 1.91435 1.95570 1.94572 1.31383 1.20962 0.99870 1.01307 0.93267 1.21283 0.90990 1.02894 0.83466 1.23538 0.90126 0.89378 0.96872 0.93678 1.22963 1.01198 0.96917 0.97775 1.23082 0.97558 0.98529 0.99833 1.23461 0.95383 0.98767 0.86289 1.89208 1.63641 1.47632 1.24704 0.93725 0.92292 0.93348 0.86496 0.86190 0.86042 0.85382 0.94577 0.87638 0.91902 0.90671 0.91415 0.90854 0.93539 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.79 11.61 55.49 0.64 -24.15 16 2 C 0.02 0.62 4.65 -17.43 -0.08 0.53 16 3 Si 0.89 22.16 29.68 -169.99 -5.05 17.11 16 4 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.30 -7.55 7.11 56.52 0.40 -7.14 16 6 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.25 -6.58 8.98 -15.06 -0.14 -6.72 16 8 H 0.07 1.79 8.02 -52.48 -0.42 1.37 16 9 N -0.56 -13.21 2.43 -174.61 -0.42 -13.63 16 10 C 0.17 3.42 5.81 -5.19 -0.03 3.39 16 11 C -0.05 -0.96 5.46 -104.63 -0.57 -1.53 16 12 C -0.13 -2.20 9.47 -39.58 -0.37 -2.58 16 13 C -0.10 -1.53 10.04 -39.59 -0.40 -1.93 16 14 C -0.18 -2.95 10.03 -39.52 -0.40 -3.34 16 15 C 0.09 1.72 7.30 -39.42 -0.29 1.43 16 16 F -0.15 -2.82 17.27 2.25 0.04 -2.78 16 17 C -0.13 -2.65 9.67 -39.52 -0.38 -3.03 16 18 C 0.14 3.09 4.84 -4.04 -0.02 3.07 16 19 C 0.06 1.17 3.70 -26.16 -0.10 1.08 16 20 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 21 C -0.15 -2.34 6.64 -25.20 -0.17 -2.50 16 22 C -0.15 -2.26 7.15 -24.72 -0.18 -2.44 16 23 C 0.04 0.64 7.72 38.21 0.29 0.94 16 24 O -0.33 -7.22 10.63 -35.23 -0.37 -7.59 16 25 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 26 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 27 H 0.05 0.85 8.05 -51.93 -0.42 0.43 16 28 H 0.12 1.82 7.69 -52.49 -0.40 1.41 16 29 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 30 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 31 H 0.13 2.53 8.06 -52.49 -0.42 2.10 16 32 H 0.04 0.74 7.48 -51.93 -0.39 0.35 16 33 H 0.11 2.71 5.24 -51.93 -0.27 2.44 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.07 1.18 7.70 -51.93 -0.40 0.78 16 36 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 37 H 0.07 1.15 8.14 -51.94 -0.42 0.73 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 327.86 15.07 4.94 4.94 Total: -1.00 -29.71 327.86 -8.70 -38.41 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.65 Total: 1.30 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -2.82 Total: -13.62 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.22 Total: -37.78 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -0.37 Total: -7.59 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.04 Total: -2.78 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.05 Total: 17.11 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.71 -8.70 -38.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050963935.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.839 kcal (2) G-P(sol) polarization free energy of solvation -29.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds