Wall clock time and date at job start Wed Apr 15 2020 11:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00456 * 2 1 4 4 H 1.48499 * 109.47180 * 264.00624 * 3 2 1 5 5 H 1.48501 * 109.46821 * 24.00438 * 3 2 1 6 6 H 1.48495 * 109.47098 * 144.00155 * 3 2 1 7 7 C 1.38816 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99543 * 216.96505 * 7 2 1 9 9 N 1.36930 * 120.00220 * 36.96571 * 7 2 1 10 10 C 1.46506 * 120.00219 * 203.70055 * 9 7 2 11 11 C 1.50703 * 109.46684 * 92.60633 * 10 9 7 12 12 C 1.38272 * 119.98511 * 87.04819 * 11 10 9 13 13 C 1.38219 * 120.05111 * 180.02562 * 12 11 10 14 14 C 1.38222 * 120.02425 * 359.97438 * 13 12 11 15 15 C 1.38431 * 119.97514 * 0.02575 * 14 13 12 16 16 F 1.35105 * 120.02632 * 180.02562 * 15 14 13 17 17 C 1.38173 * 119.99004 * 267.04800 * 11 10 9 18 18 C 1.46503 * 120.00126 * 23.70671 * 9 7 2 19 19 C 1.52997 * 109.47374 * 92.62171 * 18 9 7 20 20 H 1.08997 * 109.87354 * 60.84117 * 19 18 9 21 21 C 1.54099 * 109.87698 * 181.85228 * 19 18 9 22 22 C 1.54812 * 104.18911 * 121.45038 * 21 19 18 23 23 C 1.55000 * 102.09237 * 20.88089 * 22 21 19 24 24 O 1.43752 * 109.87722 * 299.67745 * 19 18 9 25 25 H 0.97006 * 119.99330 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47036 * 332.61102 * 10 9 7 27 27 H 1.08995 * 109.47326 * 212.60905 * 10 9 7 28 28 H 1.07997 * 119.97233 * 0.27798 * 12 11 10 29 29 H 1.08003 * 119.99062 * 180.02562 * 13 12 11 30 30 H 1.08000 * 120.01197 * 180.02562 * 14 13 12 31 31 H 1.07997 * 120.00994 * 0.02562 * 17 11 10 32 32 H 1.09000 * 109.47121 * 212.62546 * 18 9 7 33 33 H 1.09000 * 109.46935 * 332.62089 * 18 9 7 34 34 H 1.09003 * 110.48722 * 240.12720 * 21 19 18 35 35 H 1.08995 * 110.48872 * 2.64039 * 21 19 18 36 36 H 1.09007 * 110.90736 * 139.07207 * 22 21 19 37 37 H 1.08989 * 110.90945 * 262.67882 * 22 21 19 38 38 H 1.08994 * 110.61831 * 81.47263 * 23 22 21 39 39 H 1.08999 * 110.61771 * 204.47885 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6245 1.9733 -1.3924 5 1 1.3902 2.6859 0.5696 6 1 3.4787 1.4799 0.8229 7 6 2.0102 -1.2022 -0.0005 8 1 2.9274 -1.2964 0.5619 9 7 1.5319 -2.2686 -0.7141 10 6 1.9155 -3.6320 -0.3394 11 6 0.8898 -4.2000 0.6075 12 6 -0.2320 -4.8372 0.1100 13 6 -1.1738 -5.3581 0.9772 14 6 -0.9949 -5.2430 2.3430 15 6 0.1278 -4.6053 2.8422 16 9 0.3039 -4.4927 4.1769 17 6 1.0707 -4.0837 1.9724 18 6 0.6368 -2.0461 -1.8523 19 6 1.4603 -1.9555 -3.1387 20 1 2.0009 -2.8883 -3.2990 21 6 0.5320 -1.6753 -4.3363 22 6 1.0677 -0.3494 -4.9295 23 6 2.5158 -0.3088 -4.3784 24 8 2.3862 -0.8595 -3.0501 25 1 -0.4849 0.8402 0.0004 26 1 2.8899 -3.6142 0.1486 27 1 1.9681 -4.2533 -1.2334 28 1 -0.3703 -4.9315 -0.9569 29 1 -2.0494 -5.8560 0.5876 30 1 -1.7307 -5.6505 3.0204 31 1 1.9468 -3.5856 2.3607 32 1 -0.0666 -2.8752 -1.9288 33 1 0.0876 -1.1160 -1.7063 34 1 0.6034 -2.4780 -5.0703 35 1 -0.4983 -1.5568 -4.0009 36 1 1.0670 -0.3824 -6.0191 37 1 0.4895 0.5005 -4.5670 38 1 3.1757 -0.9266 -4.9873 39 1 2.8811 0.7172 -4.3345 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050963935.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:50 Heat of formation + Delta-G solvation = -57.852369 kcal Electronic energy + Delta-G solvation = -22281.768409 eV Core-core repulsion = 18910.869617 eV Total energy + Delta-G solvation = -3370.898792 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.81864 -40.27909 -39.78411 -37.14177 -33.78502 -32.90503 -32.24921 -31.26943 -30.54636 -27.37907 -26.70226 -23.96528 -23.49597 -22.75139 -21.96126 -21.40140 -18.84078 -18.09744 -17.14213 -17.07676 -16.94653 -16.79900 -16.50644 -16.21487 -16.11489 -15.39026 -15.18726 -14.93781 -14.33588 -14.31481 -14.14665 -13.55143 -13.18055 -13.10260 -12.83715 -12.66580 -12.55272 -12.40130 -12.39665 -12.18192 -12.04408 -11.73605 -11.71291 -11.61946 -11.37287 -10.38300 -10.32998 -9.74954 -9.48604 -8.69679 -7.85652 -5.12949 0.36619 0.45973 1.44217 1.50339 1.55885 2.55948 2.80917 3.23484 3.25239 3.42102 3.79185 3.88838 3.95586 4.04389 4.08068 4.19311 4.26661 4.40333 4.46524 4.53071 4.56794 4.72574 4.78975 4.87330 4.94334 4.96296 5.06212 5.09092 5.10979 5.18201 5.27007 5.31574 5.35138 5.51517 5.73727 5.80605 5.82528 6.14005 6.32120 6.50464 7.18734 7.93602 8.37113 9.13650 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.017639 B = 0.006267 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.997338 B = 4466.762113 C = 5486.211271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.016 4.016 3 Si 0.924 3.076 4 H -0.287 1.287 5 H -0.303 1.303 6 H -0.281 1.281 7 C -0.241 4.241 8 H 0.050 0.950 9 N -0.577 5.577 10 C 0.174 3.826 11 C -0.066 4.066 12 C -0.129 4.129 13 C -0.088 4.088 14 C -0.170 4.170 15 C 0.071 3.929 16 F -0.156 7.156 17 C -0.157 4.157 18 C 0.142 3.858 19 C 0.062 3.938 20 H 0.056 0.944 21 C -0.143 4.143 22 C -0.146 4.146 23 C 0.030 3.970 24 O -0.380 6.380 25 H 0.247 0.753 26 H 0.050 0.950 27 H 0.075 0.925 28 H 0.139 0.861 29 H 0.163 0.837 30 H 0.152 0.848 31 H 0.112 0.888 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.105 0.895 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.639 -9.554 -7.761 12.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.214 4.214 3 Si 0.755 3.245 4 H -0.215 1.215 5 H -0.231 1.231 6 H -0.206 1.206 7 C -0.371 4.371 8 H 0.068 0.932 9 N -0.294 5.294 10 C 0.048 3.952 11 C -0.069 4.069 12 C -0.148 4.148 13 C -0.106 4.106 14 C -0.189 4.189 15 C 0.052 3.948 16 F -0.135 7.135 17 C -0.177 4.177 18 C 0.015 3.985 19 C 0.002 3.998 20 H 0.074 0.926 21 C -0.182 4.182 22 C -0.183 4.183 23 C -0.046 4.046 24 O -0.299 6.299 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.093 0.907 28 H 0.156 0.844 29 H 0.180 0.820 30 H 0.169 0.831 31 H 0.130 0.870 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.123 0.877 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.599 -9.344 -7.507 12.092 hybrid contribution 0.460 1.396 0.580 1.581 sum -1.138 -7.948 -6.926 10.604 Atomic orbital electron populations 1.70315 1.06539 1.25636 1.51878 1.24951 0.94751 1.00080 1.01571 0.85940 0.78902 0.82068 0.77580 1.21457 1.23052 1.20629 1.18945 1.01702 0.90158 1.26295 0.93218 1.44149 1.55316 1.00155 1.29810 1.20145 0.94052 0.85824 0.95130 1.20972 0.98695 0.93547 0.93718 1.21296 0.93885 0.98691 1.00878 1.21300 0.99339 0.98286 0.91684 1.21274 0.97122 1.02912 0.97578 1.17998 0.97653 1.02563 0.76585 1.91417 1.95698 1.94721 1.31614 1.21011 1.00216 1.02326 0.94158 1.21228 0.91315 1.01534 0.84377 1.23469 0.90324 0.89358 0.96671 0.92644 1.22938 0.99898 0.98327 0.96992 1.23060 0.95782 0.97549 1.01941 1.23692 0.97164 0.98906 0.84871 1.89144 1.64381 1.48627 1.27784 0.94387 0.93121 0.90664 0.84354 0.81969 0.83075 0.87017 0.93171 0.91246 0.88541 0.91186 0.87696 0.92547 0.91085 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.58 11.61 21.65 0.25 -52.33 16 2 C -0.02 -0.88 4.65 84.86 0.39 -0.48 16 3 Si 0.92 46.86 29.68 68.60 2.04 48.90 16 4 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 5 H -0.30 -15.40 7.11 99.48 0.71 -14.70 16 6 H -0.28 -13.99 7.11 99.48 0.71 -13.29 16 7 C -0.24 -13.21 8.98 84.04 0.75 -12.46 16 8 H 0.05 2.81 8.02 -2.91 -0.02 2.79 16 9 N -0.58 -27.22 2.43 -706.33 -1.71 -28.94 16 10 C 0.17 6.84 5.81 85.63 0.50 7.34 16 11 C -0.07 -2.50 5.46 -19.87 -0.11 -2.60 16 12 C -0.13 -4.08 9.47 22.27 0.21 -3.87 16 13 C -0.09 -2.44 10.04 22.26 0.22 -2.22 16 14 C -0.17 -5.14 10.03 22.31 0.22 -4.91 16 15 C 0.07 2.61 7.30 22.37 0.16 2.78 16 16 F -0.16 -5.79 17.27 44.97 0.78 -5.02 16 17 C -0.16 -6.29 9.67 22.31 0.22 -6.07 16 18 C 0.14 6.18 4.84 86.38 0.42 6.60 16 19 C 0.06 2.27 3.70 30.97 0.11 2.39 16 20 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 21 C -0.14 -4.07 6.64 31.58 0.21 -3.87 16 22 C -0.15 -3.98 7.15 31.90 0.23 -3.75 16 23 C 0.03 0.97 7.72 72.67 0.56 1.53 16 24 O -0.38 -16.30 10.63 -148.98 -1.58 -17.89 16 25 H 0.25 14.16 8.31 -92.70 -0.77 13.39 16 26 H 0.05 2.02 7.93 -2.39 -0.02 2.01 16 27 H 0.08 2.51 8.05 -2.39 -0.02 2.49 16 28 H 0.14 3.76 7.69 -2.91 -0.02 3.74 16 29 H 0.16 3.15 8.06 -2.91 -0.02 3.12 16 30 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 31 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 32 H 0.05 1.97 7.48 -2.39 -0.02 1.95 16 33 H 0.07 3.63 5.24 -2.39 -0.01 3.62 16 34 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.07 2.06 7.70 -2.39 -0.02 2.05 16 36 H 0.10 2.08 8.14 -2.38 -0.02 2.07 16 37 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -66.25 327.86 4.90 -61.34 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 1.03 Total: 13.54 kcal Atomic # 6 Polarization: -23.72 SS G_CDS: 4.11 Total: -19.61 kcal Atomic # 7 Polarization: -79.81 SS G_CDS: -1.46 Total: -81.27 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -1.58 Total: -17.89 kcal Atomic # 9 Polarization: -5.79 SS G_CDS: 0.78 Total: -5.02 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.04 Total: 48.90 kcal Total: -66.25 4.90 -61.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050963935.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.492 kcal (2) G-P(sol) polarization free energy of solvation -66.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds