Wall clock time and date at job start Wed Apr 15 2020 11:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 120.00012 * 2 1 4 4 H 1.48492 * 109.47424 * 275.21580 * 3 2 1 5 5 H 1.48497 * 109.47066 * 35.22155 * 3 2 1 6 6 H 1.48507 * 109.46745 * 155.21445 * 3 2 1 7 7 C 1.38810 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00138 * 338.66135 * 7 2 1 9 9 N 1.36939 * 119.99968 * 158.66682 * 7 2 1 10 10 C 1.46503 * 119.99713 * 320.54153 * 9 7 2 11 11 C 1.50699 * 109.47683 * 270.00458 * 10 9 7 12 12 C 1.38172 * 120.01408 * 259.72995 * 11 10 9 13 13 C 1.38434 * 120.02894 * 179.79174 * 12 11 10 14 14 F 1.35096 * 119.97286 * 180.25282 * 13 12 11 15 15 C 1.38476 * 120.05945 * 0.45608 * 13 12 11 16 16 C 1.38134 * 120.03273 * 359.79343 * 15 13 12 17 17 C 1.38681 * 120.01403 * 80.00071 * 11 10 9 18 18 O 1.35949 * 120.03169 * 359.97438 * 17 11 10 19 19 C 1.46501 * 120.00303 * 140.55528 * 9 7 2 20 20 C 1.54970 * 110.91666 * 310.64384 * 19 9 7 21 21 C 1.54272 * 104.15819 * 156.29547 * 20 19 9 22 22 C 1.53875 * 106.63706 * 336.45012 * 21 20 19 23 23 C 1.54257 * 106.60360 * 359.97344 * 22 21 20 24 24 H 0.97005 * 120.00270 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47342 * 30.00904 * 10 9 7 26 26 H 1.09004 * 109.46683 * 150.00219 * 10 9 7 27 27 H 1.08001 * 119.98802 * 0.02562 * 12 11 10 28 28 H 1.07997 * 119.98974 * 179.76787 * 15 13 12 29 29 H 1.07993 * 120.02011 * 179.97438 * 16 15 13 30 30 H 0.96701 * 113.99664 * 90.00025 * 18 17 11 31 31 H 1.08999 * 110.67315 * 187.34481 * 19 9 7 32 32 H 1.09003 * 110.47613 * 37.65199 * 20 19 9 33 33 H 1.08994 * 110.53219 * 274.97706 * 20 19 9 34 34 H 1.08993 * 110.03262 * 217.14067 * 21 20 19 35 35 H 1.08996 * 110.02883 * 95.75329 * 21 20 19 36 36 H 1.09000 * 110.03261 * 119.26078 * 22 21 20 37 37 H 1.08999 * 110.03120 * 240.63551 * 22 21 20 38 38 H 1.08995 * 110.49023 * 142.28797 * 23 22 21 39 39 H 1.09004 * 110.48511 * 264.80474 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3875 2.1102 -1.3942 5 1 1.5071 2.6183 0.8075 6 1 3.5985 1.4108 0.5870 7 6 2.0102 -1.2021 -0.0005 8 1 1.5257 -2.1056 0.3394 9 7 3.3092 -1.2426 -0.4320 10 6 3.7209 -0.4476 -1.5917 11 6 3.5432 -1.2615 -2.8475 12 6 4.6326 -1.8803 -3.4300 13 6 4.4690 -2.6316 -4.5812 14 9 5.5341 -3.2403 -5.1469 15 6 3.2153 -2.7563 -5.1557 16 6 2.1252 -2.1345 -4.5783 17 6 2.2871 -1.3852 -3.4220 18 8 1.2151 -0.7728 -2.8526 19 6 4.2871 -2.0810 0.2659 20 6 4.2336 -1.8371 1.7953 21 6 4.8055 -3.1340 2.4044 22 6 4.6017 -4.2408 1.3551 23 6 3.9121 -3.5788 0.1444 24 1 -0.4851 0.8401 0.0004 25 1 3.1080 0.4517 -1.6518 26 1 4.7688 -0.1667 -1.4860 27 1 5.6117 -1.7809 -2.9850 28 1 3.0895 -3.3396 -6.0559 29 1 1.1476 -2.2316 -5.0268 30 1 1.0574 0.1248 -3.1760 31 1 5.2913 -1.9017 -0.1183 32 1 3.2047 -1.6841 2.1213 33 1 4.8523 -0.9823 2.0680 34 1 4.2699 -3.3843 3.3201 35 1 5.8677 -3.0105 2.6153 36 1 5.5650 -4.6540 1.0563 37 1 3.9679 -5.0288 1.7619 38 1 4.2962 -3.9938 -0.7874 39 1 2.8315 -3.7095 0.2024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180182551.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:01 Heat of formation + Delta-G solvation = -42.384858 kcal Electronic energy + Delta-G solvation = -22829.012357 eV Core-core repulsion = 19458.784287 eV Total energy + Delta-G solvation = -3370.228071 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.55626 -39.30543 -37.68364 -35.69643 -34.62391 -31.82075 -30.69159 -28.84590 -27.95011 -27.08314 -25.60871 -22.92575 -22.15721 -21.01902 -19.61523 -19.25588 -17.73790 -17.11155 -16.32213 -16.12978 -15.40890 -15.30929 -15.12730 -14.70587 -14.34539 -13.74248 -13.41715 -13.23799 -13.03649 -12.68287 -12.58628 -12.50209 -12.01816 -11.49161 -11.34705 -11.19361 -10.96411 -10.76615 -10.62213 -10.46140 -10.39652 -10.03937 -9.85924 -9.76090 -9.69613 -9.47990 -8.58167 -8.39876 -7.88599 -6.75711 -5.91310 -3.32369 1.54497 1.59711 3.24439 3.45704 3.50230 3.89369 4.53765 4.61447 4.85696 4.98365 5.13258 5.21208 5.28988 5.34829 5.41259 5.56883 5.64226 5.78123 5.99092 6.04952 6.12309 6.20036 6.23775 6.29734 6.33634 6.38455 6.44767 6.49105 6.49464 6.53803 6.66360 6.70081 6.98466 7.02737 7.07758 7.20840 7.21977 8.10641 8.46486 8.48597 9.02211 9.77951 10.15310 11.23665 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.013171 B = 0.009069 C = 0.006276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.384482 B = 3086.807403 C = 4460.547397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.058 3.942 3 Si 0.863 3.137 4 H -0.290 1.290 5 H -0.304 1.304 6 H -0.270 1.270 7 C -0.246 4.246 8 H 0.075 0.925 9 N -0.582 5.582 10 C 0.173 3.827 11 C -0.086 4.086 12 C -0.138 4.138 13 C 0.072 3.928 14 F -0.151 7.151 15 C -0.154 4.154 16 C -0.128 4.128 17 C 0.127 3.873 18 O -0.446 6.446 19 C 0.174 3.826 20 C -0.131 4.131 21 C -0.121 4.121 22 C -0.121 4.121 23 C -0.134 4.134 24 H 0.259 0.741 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.130 0.870 30 H 0.372 0.628 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.048 0.952 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.981 -2.762 -5.410 10.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.143 4.143 3 Si 0.694 3.306 4 H -0.218 1.218 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.375 4.375 8 H 0.093 0.907 9 N -0.301 5.301 10 C 0.047 3.953 11 C -0.090 4.090 12 C -0.158 4.158 13 C 0.052 3.948 14 F -0.129 7.129 15 C -0.173 4.173 16 C -0.147 4.147 17 C 0.080 3.920 18 O -0.254 6.254 19 C 0.067 3.933 20 C -0.170 4.170 21 C -0.159 4.159 22 C -0.159 4.159 23 C -0.174 4.174 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.145 0.855 28 H 0.145 0.855 29 H 0.148 0.852 30 H 0.227 0.773 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.782 -3.196 -5.041 9.807 hybrid contribution 0.611 1.140 -0.473 1.377 sum 8.393 -2.056 -5.514 10.250 Atomic orbital electron populations 1.69885 1.05819 1.26071 1.50727 1.25285 0.94664 0.96813 0.97555 0.87191 0.81083 0.85666 0.76687 1.21806 1.23194 1.19469 1.18454 0.85538 0.93908 1.39587 0.90709 1.44115 1.07736 1.52140 1.26074 1.20248 0.97916 0.93424 0.83707 1.21238 0.91688 0.99388 0.96709 1.20850 0.99861 0.99654 0.95455 1.17622 0.83631 0.98412 0.95088 1.91434 1.55239 1.81605 1.84659 1.20783 0.91243 1.03577 1.01740 1.21287 0.98568 0.99259 0.95599 1.18426 0.87141 0.95906 0.90540 1.85337 1.44144 1.31008 1.64897 1.21398 0.91054 0.89752 0.91074 1.22683 1.02306 0.95141 0.96831 1.22060 0.99648 0.96164 0.98065 1.22046 0.99557 0.97656 0.96629 1.22749 1.01407 0.97429 0.95822 0.93094 0.91652 0.93421 0.85503 0.85510 0.85221 0.77343 0.92808 0.89605 0.93211 0.92672 0.93055 0.93035 0.92789 0.93362 0.90791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.03 13.97 55.49 0.78 -24.25 16 2 C 0.06 1.53 4.21 -17.43 -0.07 1.46 16 3 Si 0.86 20.59 25.07 -169.99 -4.26 16.32 16 4 H -0.29 -6.57 6.68 56.52 0.38 -6.19 16 5 H -0.30 -7.56 7.11 56.52 0.40 -7.15 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.25 -6.33 7.26 -15.06 -0.11 -6.44 16 8 H 0.08 2.18 7.11 -52.49 -0.37 1.81 16 9 N -0.58 -12.87 2.09 -164.71 -0.34 -13.21 16 10 C 0.17 3.52 4.31 -5.19 -0.02 3.50 16 11 C -0.09 -1.62 5.48 -104.48 -0.57 -2.19 16 12 C -0.14 -2.33 9.64 -39.53 -0.38 -2.72 16 13 C 0.07 1.16 7.30 -39.42 -0.29 0.87 16 14 F -0.15 -2.39 17.27 2.25 0.04 -2.35 16 15 C -0.15 -2.34 10.02 -39.53 -0.40 -2.73 16 16 C -0.13 -2.08 9.99 -39.44 -0.39 -2.47 16 17 C 0.13 2.39 6.68 -39.23 -0.26 2.13 16 18 O -0.45 -9.23 10.69 -19.58 -0.21 -9.44 16 19 C 0.17 3.37 3.43 -65.89 -0.23 3.15 16 20 C -0.13 -2.43 6.32 -25.03 -0.16 -2.59 16 21 C -0.12 -1.87 6.80 -25.61 -0.17 -2.05 16 22 C -0.12 -1.87 6.80 -25.62 -0.17 -2.04 16 23 C -0.13 -2.48 6.41 -25.08 -0.16 -2.64 16 24 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 25 H 0.07 1.43 3.15 -51.93 -0.16 1.27 16 26 H 0.05 0.88 7.76 -51.93 -0.40 0.47 16 27 H 0.13 1.94 8.03 -52.49 -0.42 1.52 16 28 H 0.13 1.60 8.06 -52.49 -0.42 1.17 16 29 H 0.13 1.85 8.06 -52.49 -0.42 1.42 16 30 H 0.37 6.39 9.06 45.56 0.41 6.81 16 31 H 0.05 0.97 7.84 -51.93 -0.41 0.56 16 32 H 0.09 1.83 6.99 -51.93 -0.36 1.47 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.07 1.57 6.86 -51.93 -0.36 1.21 16 LS Contribution 314.69 15.07 4.74 4.74 Total: -1.00 -28.39 314.69 -7.27 -35.65 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -4.61 Total: 7.31 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -3.39 Total: -14.77 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.43 Total: -37.47 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -0.21 Total: -9.44 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.04 Total: -2.35 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.26 Total: 16.32 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.39 -7.27 -35.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180182551.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.731 kcal (2) G-P(sol) polarization free energy of solvation -28.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds