Wall clock time and date at job start Wed Apr 15 2020 11:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 120.00012 * 2 1 4 4 H 1.48492 * 109.47424 * 275.21580 * 3 2 1 5 5 H 1.48497 * 109.47066 * 35.22155 * 3 2 1 6 6 H 1.48507 * 109.46745 * 155.21445 * 3 2 1 7 7 C 1.38810 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00138 * 338.66135 * 7 2 1 9 9 N 1.36939 * 119.99968 * 158.66682 * 7 2 1 10 10 C 1.46503 * 119.99713 * 320.54153 * 9 7 2 11 11 C 1.50699 * 109.47683 * 270.00458 * 10 9 7 12 12 C 1.38172 * 120.01408 * 259.72995 * 11 10 9 13 13 C 1.38434 * 120.02894 * 179.79174 * 12 11 10 14 14 F 1.35096 * 119.97286 * 180.25282 * 13 12 11 15 15 C 1.38476 * 120.05945 * 0.45608 * 13 12 11 16 16 C 1.38134 * 120.03273 * 359.79343 * 15 13 12 17 17 C 1.38681 * 120.01403 * 80.00071 * 11 10 9 18 18 O 1.35949 * 120.03169 * 359.97438 * 17 11 10 19 19 C 1.46501 * 120.00303 * 140.55528 * 9 7 2 20 20 C 1.54970 * 110.91666 * 310.64384 * 19 9 7 21 21 C 1.54272 * 104.15819 * 156.29547 * 20 19 9 22 22 C 1.53875 * 106.63706 * 336.45012 * 21 20 19 23 23 C 1.54257 * 106.60360 * 359.97344 * 22 21 20 24 24 H 0.97005 * 120.00270 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47342 * 30.00904 * 10 9 7 26 26 H 1.09004 * 109.46683 * 150.00219 * 10 9 7 27 27 H 1.08001 * 119.98802 * 0.02562 * 12 11 10 28 28 H 1.07997 * 119.98974 * 179.76787 * 15 13 12 29 29 H 1.07993 * 120.02011 * 179.97438 * 16 15 13 30 30 H 0.96701 * 113.99664 * 90.00025 * 18 17 11 31 31 H 1.08999 * 110.67315 * 187.34481 * 19 9 7 32 32 H 1.09003 * 110.47613 * 37.65199 * 20 19 9 33 33 H 1.08994 * 110.53219 * 274.97706 * 20 19 9 34 34 H 1.08993 * 110.03262 * 217.14067 * 21 20 19 35 35 H 1.08996 * 110.02883 * 95.75329 * 21 20 19 36 36 H 1.09000 * 110.03261 * 119.26078 * 22 21 20 37 37 H 1.08999 * 110.03120 * 240.63551 * 22 21 20 38 38 H 1.08995 * 110.49023 * 142.28797 * 23 22 21 39 39 H 1.09004 * 110.48511 * 264.80474 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3875 2.1102 -1.3942 5 1 1.5071 2.6183 0.8075 6 1 3.5985 1.4108 0.5870 7 6 2.0102 -1.2021 -0.0005 8 1 1.5257 -2.1056 0.3394 9 7 3.3092 -1.2426 -0.4320 10 6 3.7209 -0.4476 -1.5917 11 6 3.5432 -1.2615 -2.8475 12 6 4.6326 -1.8803 -3.4300 13 6 4.4690 -2.6316 -4.5812 14 9 5.5341 -3.2403 -5.1469 15 6 3.2153 -2.7563 -5.1557 16 6 2.1252 -2.1345 -4.5783 17 6 2.2871 -1.3852 -3.4220 18 8 1.2151 -0.7728 -2.8526 19 6 4.2871 -2.0810 0.2659 20 6 4.2336 -1.8371 1.7953 21 6 4.8055 -3.1340 2.4044 22 6 4.6017 -4.2408 1.3551 23 6 3.9121 -3.5788 0.1444 24 1 -0.4851 0.8401 0.0004 25 1 3.1080 0.4517 -1.6518 26 1 4.7688 -0.1667 -1.4860 27 1 5.6117 -1.7809 -2.9850 28 1 3.0895 -3.3396 -6.0559 29 1 1.1476 -2.2316 -5.0268 30 1 1.0574 0.1248 -3.1760 31 1 5.2913 -1.9017 -0.1183 32 1 3.2047 -1.6841 2.1213 33 1 4.8523 -0.9823 2.0680 34 1 4.2699 -3.3843 3.3201 35 1 5.8677 -3.0105 2.6153 36 1 5.5650 -4.6540 1.0563 37 1 3.9679 -5.0288 1.7619 38 1 4.2962 -3.9938 -0.7874 39 1 2.8315 -3.7095 0.2024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180182551.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:00 Heat of formation + Delta-G solvation = -59.126636 kcal Electronic energy + Delta-G solvation = -22829.738335 eV Core-core repulsion = 19458.784287 eV Total energy + Delta-G solvation = -3370.954049 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.81787 -40.72735 -39.17127 -37.16065 -36.21657 -33.65878 -32.21567 -30.21836 -29.37818 -28.55188 -27.33104 -24.54598 -23.55287 -22.45180 -21.01482 -20.84623 -19.21402 -18.64634 -17.81636 -17.64096 -16.95561 -16.88144 -16.52522 -16.11355 -15.88454 -15.14131 -14.81648 -14.68375 -14.63092 -14.35173 -14.07701 -14.01003 -13.62376 -13.02805 -12.79208 -12.69655 -12.60363 -12.32771 -12.13443 -11.94067 -11.83357 -11.79950 -11.53177 -11.23090 -11.13331 -11.11657 -10.38938 -9.90206 -9.25809 -8.55948 -7.95797 -5.34898 0.20324 0.28604 1.33403 1.49611 1.57211 2.53536 2.55902 3.26671 3.34814 3.47467 3.51909 3.82940 3.91698 3.99271 4.02702 4.22223 4.24870 4.43612 4.56656 4.60803 4.71756 4.79121 4.86651 4.91243 4.96671 4.99939 5.03337 5.15075 5.17984 5.21473 5.27122 5.29586 5.54545 5.58460 5.64554 5.68724 5.91190 6.15074 6.40692 7.06920 7.16950 7.82498 8.22644 9.23819 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.013171 B = 0.009069 C = 0.006276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.384482 B = 3086.807403 C = 4460.547397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.018 3.982 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.320 1.320 6 H -0.265 1.265 7 C -0.222 4.222 8 H 0.025 0.975 9 N -0.593 5.593 10 C 0.170 3.830 11 C -0.103 4.103 12 C -0.134 4.134 13 C 0.070 3.930 14 F -0.145 7.145 15 C -0.140 4.140 16 C -0.128 4.128 17 C 0.103 3.897 18 O -0.474 6.474 19 C 0.165 3.835 20 C -0.131 4.131 21 C -0.113 4.113 22 C -0.114 4.114 23 C -0.129 4.129 24 H 0.256 0.744 25 H 0.049 0.951 26 H 0.071 0.929 27 H 0.145 0.855 28 H 0.159 0.841 29 H 0.148 0.852 30 H 0.381 0.619 31 H 0.079 0.921 32 H 0.046 0.954 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.051 0.949 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.914 -3.444 -6.637 13.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.180 4.180 3 Si 0.750 3.250 4 H -0.199 1.199 5 H -0.250 1.250 6 H -0.189 1.189 7 C -0.352 4.352 8 H 0.043 0.957 9 N -0.312 5.312 10 C 0.045 3.955 11 C -0.106 4.106 12 C -0.153 4.153 13 C 0.051 3.949 14 F -0.124 7.124 15 C -0.159 4.159 16 C -0.146 4.146 17 C 0.057 3.943 18 O -0.283 6.283 19 C 0.059 3.941 20 C -0.170 4.170 21 C -0.151 4.151 22 C -0.152 4.152 23 C -0.168 4.168 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.090 0.910 27 H 0.163 0.837 28 H 0.177 0.823 29 H 0.165 0.835 30 H 0.237 0.763 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 10.765 -3.889 -6.298 13.064 hybrid contribution -0.263 1.236 -0.201 1.279 sum 10.501 -2.654 -6.499 12.632 Atomic orbital electron populations 1.70007 1.07387 1.26366 1.53907 1.25630 0.94931 0.99301 0.98120 0.86262 0.79597 0.81904 0.77252 1.19853 1.24974 1.18939 1.18023 0.86822 0.91924 1.38425 0.95703 1.44165 1.06796 1.52704 1.27566 1.20231 0.98695 0.92751 0.83824 1.21071 0.92401 1.00210 0.96941 1.20961 0.99965 0.98936 0.95482 1.17694 0.84125 0.98219 0.94909 1.91454 1.55048 1.81437 1.84487 1.21118 0.90307 1.02324 1.02150 1.21450 0.99928 0.98494 0.94750 1.18768 0.86842 0.96863 0.91793 1.85297 1.45123 1.31930 1.65928 1.21644 0.91445 0.89612 0.91365 1.22623 1.00341 0.97367 0.96702 1.22027 1.01169 0.94053 0.97890 1.22024 1.00550 0.97547 0.95075 1.22617 0.99094 0.97506 0.97606 0.93516 0.93340 0.91033 0.83717 0.82334 0.83455 0.76330 0.90341 0.93520 0.92566 0.92222 0.90230 0.90322 0.92407 0.93040 0.94911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.37 13.97 21.65 0.30 -55.07 16 2 C 0.02 0.96 4.21 84.86 0.36 1.31 16 3 Si 0.92 43.46 25.07 68.60 1.72 45.18 16 4 H -0.27 -11.86 6.68 99.48 0.66 -11.20 16 5 H -0.32 -15.89 7.11 99.48 0.71 -15.18 16 6 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.22 -11.91 7.26 84.03 0.61 -11.30 16 8 H 0.03 1.58 7.11 -2.91 -0.02 1.56 16 9 N -0.59 -26.26 2.09 -675.02 -1.41 -27.67 16 10 C 0.17 6.74 4.31 85.63 0.37 7.11 16 11 C -0.10 -3.73 5.48 -19.77 -0.11 -3.84 16 12 C -0.13 -4.15 9.64 22.30 0.22 -3.93 16 13 C 0.07 2.03 7.30 22.37 0.16 2.20 16 14 F -0.15 -4.09 17.27 44.97 0.78 -3.31 16 15 C -0.14 -3.79 10.02 22.30 0.22 -3.56 16 16 C -0.13 -3.90 9.99 22.36 0.22 -3.67 16 17 C 0.10 3.84 6.68 22.49 0.15 3.99 16 18 O -0.47 -20.07 10.69 -92.98 -0.99 -21.06 16 19 C 0.17 6.22 3.43 46.31 0.16 6.38 16 20 C -0.13 -4.79 6.32 31.70 0.20 -4.59 16 21 C -0.11 -3.23 6.80 31.32 0.21 -3.02 16 22 C -0.11 -3.26 6.80 31.32 0.21 -3.05 16 23 C -0.13 -4.68 6.41 31.66 0.20 -4.48 16 24 H 0.26 14.56 8.31 -92.70 -0.77 13.79 16 25 H 0.05 2.08 3.15 -2.39 -0.01 2.08 16 26 H 0.07 2.45 7.76 -2.38 -0.02 2.43 16 27 H 0.15 3.90 8.03 -2.91 -0.02 3.87 16 28 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 29 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 30 H 0.38 13.56 9.06 -74.06 -0.67 12.89 16 31 H 0.08 2.58 7.84 -2.39 -0.02 2.56 16 32 H 0.05 2.05 6.99 -2.39 -0.02 2.04 16 33 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.03 1.44 6.86 -2.39 -0.02 1.42 16 Total: -1.00 -63.72 314.69 3.94 -59.79 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.35 Total: 22.58 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: 3.19 Total: -20.44 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -1.11 Total: -82.73 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.99 Total: -21.06 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.78 Total: -3.31 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 1.72 Total: 45.18 kcal Total: -63.72 3.94 -59.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180182551.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.662 kcal (2) G-P(sol) polarization free energy of solvation -63.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds