Wall clock time and date at job start Wed Apr 15 2020 11:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00107 * 2 1 4 4 H 1.48507 * 109.46977 * 269.99740 * 3 2 1 5 5 H 1.48501 * 109.47177 * 29.99569 * 3 2 1 6 6 H 1.48495 * 109.47062 * 149.99776 * 3 2 1 7 7 C 1.37882 * 119.99713 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99786 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99629 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46658 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.46908 * 179.97438 * 10 9 7 12 12 C 1.47845 * 111.00128 * 290.84174 * 11 10 9 13 13 C 1.54909 * 104.79374 * 213.63978 * 12 11 10 14 14 C 1.55131 * 101.65719 * 37.06983 * 13 12 11 15 15 H 1.09007 * 110.85516 * 82.79754 * 14 13 12 16 16 O 1.42894 * 110.71063 * 205.96593 * 14 13 12 17 17 C 1.35899 * 116.99729 * 269.84720 * 16 14 13 18 18 C 1.38774 * 120.04128 * 185.47450 * 17 16 14 19 19 C 1.38135 * 119.99591 * 179.97438 * 18 17 16 20 20 C 1.38258 * 120.07862 * 359.97438 * 19 18 17 21 21 C 1.38477 * 120.08343 * 0.04541 * 20 19 18 22 22 F 1.35102 * 119.99655 * 179.97438 * 21 20 19 23 23 C 1.38384 * 120.00642 * 359.70051 * 21 20 19 24 24 C 1.47446 * 110.99488 * 170.00105 * 11 10 9 25 25 H 0.97003 * 119.99984 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47338 * 60.00285 * 9 7 2 27 27 H 1.09001 * 109.47053 * 299.99723 * 9 7 2 28 28 H 1.09001 * 109.46768 * 299.99989 * 10 9 7 29 29 H 1.08999 * 109.46967 * 60.00115 * 10 9 7 30 30 H 1.09006 * 110.37130 * 332.46660 * 12 11 10 31 31 H 1.08997 * 110.37153 * 94.80847 * 12 11 10 32 32 H 1.08998 * 110.98458 * 278.97600 * 13 12 11 33 33 H 1.09001 * 111.01850 * 155.17877 * 13 12 11 34 34 H 1.07997 * 120.00048 * 359.97438 * 18 17 16 35 35 H 1.07990 * 119.96302 * 180.02562 * 19 18 17 36 36 H 1.08001 * 119.95752 * 180.02562 * 20 19 18 37 37 H 1.07999 * 120.04198 * 180.28316 * 23 21 20 38 38 H 1.08998 * 109.88442 * 242.66108 * 24 11 10 39 39 H 1.09000 * 109.89031 * 3.85153 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5105 -4.9343 0.0012 12 6 0.8207 -5.1472 1.2914 13 6 0.8632 -6.6796 1.5145 14 6 2.2636 -7.0394 0.9524 15 1 3.0384 -6.8622 1.6984 16 8 2.2955 -8.3965 0.5061 17 6 2.6640 -9.3366 1.4157 18 6 2.8267 -10.6575 1.0225 19 6 3.2018 -11.6122 1.9477 20 6 3.4161 -11.2534 3.2657 21 6 3.2542 -9.9363 3.6616 22 9 3.4635 -9.5878 4.9500 23 6 2.8837 -8.9761 2.7366 24 6 2.4202 -6.0698 -0.2378 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6239 -2.5566 0.8903 28 1 2.8717 -3.6044 -0.8895 29 1 2.8717 -3.6044 0.8905 30 1 1.3491 -4.6321 2.0937 31 1 -0.2110 -4.8008 1.2317 32 1 0.0757 -7.1783 0.9495 33 1 0.7938 -6.9223 2.5748 34 1 2.6601 -10.9390 -0.0067 35 1 3.3287 -12.6398 1.6411 36 1 3.7097 -12.0013 3.9873 37 1 2.7618 -7.9480 3.0438 38 1 2.1482 -6.5740 -1.1651 39 1 3.4493 -5.7149 -0.2942 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183351683.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:07 Heat of formation + Delta-G solvation = -56.373561 kcal Electronic energy + Delta-G solvation = -20953.326405 eV Core-core repulsion = 17582.491738 eV Total energy + Delta-G solvation = -3370.834666 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.17781 -40.57953 -38.64619 -36.99831 -33.50755 -31.71057 -30.99430 -30.17220 -28.95664 -27.91454 -24.54634 -23.28191 -22.84179 -21.68633 -20.85117 -19.95378 -18.93747 -17.06834 -16.56481 -16.38836 -16.25130 -15.95329 -15.48682 -14.91591 -14.74479 -14.45046 -14.22960 -14.01958 -13.82557 -13.19295 -12.97308 -12.53739 -12.26831 -12.11578 -11.96089 -11.85978 -11.60074 -11.28326 -11.07799 -10.90881 -10.84362 -10.64305 -10.54030 -9.90981 -9.42503 -9.23988 -9.16207 -8.53444 -8.36287 -7.86201 -6.01580 -4.04437 0.82368 0.97536 2.87231 3.28549 3.30874 3.37114 3.39941 3.91317 4.27156 4.39411 4.45781 4.53668 4.66412 4.68381 4.79797 4.85331 4.95860 5.12075 5.34392 5.40304 5.44826 5.62447 5.68868 5.73100 5.82624 5.87578 5.97974 6.00950 6.08064 6.14092 6.31696 6.35612 6.43673 6.89801 7.14815 7.35274 7.40345 7.71998 7.85061 8.04636 8.40021 9.02806 9.59436 11.09759 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.034517 B = 0.002922 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.996535 B = 9578.725895 C = 9914.660856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.054 0.946 9 C 0.029 3.971 10 C 0.056 3.944 11 N -0.522 5.522 12 C 0.049 3.951 13 C -0.151 4.151 14 C 0.059 3.941 15 H 0.081 0.919 16 O -0.295 6.295 17 C 0.167 3.833 18 C -0.166 4.166 19 C -0.052 4.052 20 C -0.198 4.198 21 C 0.139 3.861 22 F -0.137 7.137 23 C -0.249 4.249 24 C 0.049 3.951 25 H 0.261 0.739 26 H 0.025 0.975 27 H 0.016 0.984 28 H 0.063 0.937 29 H 0.023 0.977 30 H 0.051 0.949 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.142 0.858 38 H 0.087 0.913 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.588 -23.026 4.961 24.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.563 4.563 8 H 0.072 0.928 9 C -0.008 4.008 10 C -0.071 4.071 11 N -0.247 5.247 12 C -0.079 4.079 13 C -0.189 4.189 14 C 0.002 3.998 15 H 0.099 0.901 16 O -0.207 6.207 17 C 0.121 3.879 18 C -0.184 4.184 19 C -0.070 4.070 20 C -0.218 4.218 21 C 0.120 3.880 22 F -0.116 7.116 23 C -0.269 4.269 24 C -0.079 4.079 25 H 0.070 0.930 26 H 0.044 0.956 27 H 0.035 0.965 28 H 0.082 0.918 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.156 0.844 35 H 0.157 0.843 36 H 0.153 0.847 37 H 0.160 0.840 38 H 0.105 0.895 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.029 -22.856 4.400 23.813 hybrid contribution 1.120 1.183 1.158 1.998 sum 6.149 -21.674 5.558 23.204 Atomic orbital electron populations 1.69973 1.06028 1.26624 1.50523 1.24996 0.94838 0.99202 0.95261 0.86592 0.79788 0.83454 0.78143 1.20600 1.21205 1.19938 1.21182 0.92965 0.91051 1.51069 0.92798 1.19051 0.93905 0.89929 0.97924 1.22627 0.96829 0.88532 0.99133 1.63791 1.27460 1.02027 1.31457 1.22948 1.01215 0.92934 0.90769 1.23281 0.96718 0.97693 1.01207 1.23961 0.98364 0.79038 0.98437 0.90071 1.86171 1.81648 1.16101 1.36742 1.18795 0.92091 0.89655 0.87406 1.20553 1.06399 0.90096 1.01398 1.20803 0.95300 0.99382 0.91537 1.21042 1.08053 0.94727 0.97931 1.17419 0.99014 0.93227 0.78376 1.91516 1.92228 1.92851 1.34994 1.21285 1.11265 1.01064 0.93242 1.22845 0.96806 0.90927 0.97320 0.92958 0.95620 0.96535 0.91827 0.95904 0.93100 0.89367 0.89386 0.90724 0.84407 0.84316 0.84716 0.84008 0.89454 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.58 29.54 -169.99 -5.02 16.55 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.76 5.02 -27.88 -0.14 0.62 16 10 C 0.06 1.15 4.50 -3.82 -0.02 1.13 16 11 N -0.52 -9.31 5.16 -231.24 -1.19 -10.50 16 12 C 0.05 0.78 5.78 -2.30 -0.01 0.77 16 13 C -0.15 -1.94 6.62 -24.60 -0.16 -2.10 16 14 C 0.06 0.75 2.73 -24.91 -0.07 0.68 16 15 H 0.08 0.97 6.25 -51.93 -0.32 0.65 16 16 O -0.29 -3.69 9.86 -19.42 -0.19 -3.89 16 17 C 0.17 1.88 6.67 -39.22 -0.26 1.62 16 18 C -0.17 -1.53 9.99 -39.42 -0.39 -1.92 16 19 C -0.05 -0.40 10.04 -39.61 -0.40 -0.79 16 20 C -0.20 -1.71 10.02 -39.49 -0.40 -2.11 16 21 C 0.14 1.49 7.30 -39.44 -0.29 1.20 16 22 F -0.14 -1.58 17.27 2.25 0.04 -1.55 16 23 C -0.25 -2.78 8.89 -39.37 -0.35 -3.13 16 24 C 0.05 0.72 6.64 -2.83 -0.02 0.70 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.02 0.44 7.49 -51.93 -0.39 0.05 16 28 H 0.06 1.30 8.03 -51.93 -0.42 0.88 16 29 H 0.02 0.46 7.85 -51.93 -0.41 0.06 16 30 H 0.05 0.83 7.62 -51.93 -0.40 0.44 16 31 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.07 0.84 7.76 -51.93 -0.40 0.44 16 34 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 35 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 36 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.14 1.55 5.59 -52.49 -0.29 1.26 16 38 H 0.09 1.26 8.06 -51.93 -0.42 0.84 16 39 H 0.06 0.87 7.55 -51.93 -0.39 0.48 16 LS Contribution 326.05 15.07 4.91 4.91 Total: -1.00 -30.41 326.05 -9.15 -39.56 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -5.52 Total: -2.23 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -2.92 Total: -16.82 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: -0.46 Total: -36.56 kcal Atomic # 8 Polarization: -3.69 SS G_CDS: -0.19 Total: -3.89 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.41 -9.15 -39.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183351683.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.809 kcal (2) G-P(sol) polarization free energy of solvation -30.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds